Wall clock time and date at job start Fri Apr 10 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39655 * 120.14945 * 220.87970 * 3 2 1 5 5 C 1.37925 * 119.84394 * 180.23592 * 4 3 2 6 6 C 1.38391 * 120.15344 * 359.51459 * 5 4 3 7 7 C 1.38345 * 120.30276 * 0.26047 * 6 5 4 8 8 C 1.50697 * 119.92169 * 180.02562 * 7 6 5 9 9 S 1.81399 * 109.47285 * 89.99785 * 8 7 6 10 10 O 1.42105 * 110.54115 * 291.61948 * 9 8 7 11 11 O 1.42094 * 110.54600 * 68.37455 * 9 8 7 12 12 N 1.65600 * 104.44599 * 179.97438 * 9 8 7 13 13 C 1.47064 * 136.05805 * 269.62382 * 12 9 8 14 14 C 1.53753 * 87.88879 * 152.96964 * 13 12 9 15 15 O 1.42903 * 114.39356 * 272.67892 * 14 13 12 16 16 C 1.50696 * 114.26823 * 139.79576 * 14 13 12 17 17 H 1.08003 * 120.00294 * 266.47714 * 16 14 13 18 18 C 1.37876 * 120.00365 * 86.47391 * 16 14 13 19 19 N 1.31516 * 119.99705 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00255 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47109 * 89.99892 * 20 18 16 22 22 H 1.48505 * 109.47001 * 210.00005 * 20 18 16 23 23 H 1.48498 * 109.46967 * 329.99865 * 20 18 16 24 24 C 1.47066 * 136.05870 * 90.00714 * 12 9 8 25 25 C 1.37962 * 120.15099 * 359.97010 * 7 6 5 26 26 H 1.07998 * 120.07593 * 0.02792 * 4 3 2 27 27 H 1.08002 * 119.92568 * 179.79894 * 5 4 3 28 28 H 1.08002 * 119.84693 * 180.23438 * 6 5 4 29 29 H 1.09004 * 109.47151 * 209.99863 * 8 7 6 30 30 H 1.09001 * 109.46981 * 329.99738 * 8 7 6 31 31 H 1.08999 * 113.47126 * 267.70323 * 13 12 9 32 32 H 1.09001 * 113.46949 * 38.14151 * 13 12 9 33 33 H 0.96703 * 113.99602 * 273.58282 * 15 14 13 34 34 H 0.97002 * 119.99931 * 180.02562 * 19 18 16 35 35 H 1.09008 * 113.46312 * 321.85395 * 24 12 9 36 36 H 1.08993 * 113.47351 * 92.23700 * 24 12 9 37 37 H 1.08003 * 120.07699 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2690 0.9140 0.7904 5 6 4.6482 0.9123 0.7818 6 6 5.3374 0.0017 0.0002 7 6 4.6492 -0.9090 -0.7815 8 6 5.4084 -1.8972 -1.6290 9 16 5.7124 -3.4073 -0.6711 10 8 6.6316 -3.1530 0.3824 11 8 4.4945 -4.0984 -0.4297 12 7 6.5428 -4.3948 -1.7091 13 6 6.1924 -5.4208 -2.7028 14 6 7.4988 -5.0754 -3.4362 15 8 7.3825 -4.0061 -4.3771 16 6 8.2378 -6.2704 -3.9810 17 1 9.0140 -6.7390 -3.3942 18 6 7.9230 -6.7657 -5.2287 19 7 6.9781 -6.1949 -5.9435 20 14 8.8386 -8.2475 -5.9037 21 1 8.1306 -9.4905 -5.5051 22 1 8.8936 -8.1625 -7.3853 23 1 10.2193 -8.2672 -5.3574 24 6 7.9557 -4.6366 -2.0381 25 6 3.2696 -0.9152 -0.7862 26 1 2.7323 1.6222 1.4042 27 1 5.1916 1.6202 1.3900 28 1 6.4174 0.0022 0.0002 29 1 4.8228 -2.1409 -2.5155 30 1 6.3605 -1.4607 -1.9311 31 1 6.1773 -6.4319 -2.2960 32 1 5.2957 -5.1827 -3.2749 33 1 7.0946 -4.2859 -5.2568 34 1 6.7563 -6.5436 -6.8211 35 1 8.5612 -3.7302 -2.0439 36 1 8.4058 -5.4403 -1.4554 37 1 2.7336 -1.6270 -1.3966 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189060178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:32 Heat of formation + Delta-G solvation = -45.131778 kcal Electronic energy + Delta-G solvation = -24279.944816 eV Core-core repulsion = 20536.272754 eV Total energy + Delta-G solvation = -3743.672061 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66491 -40.29559 -38.18934 -37.69326 -37.05841 -35.75932 -34.24966 -34.02185 -32.39132 -29.63237 -28.56778 -26.71752 -26.43925 -25.03565 -23.10338 -21.40752 -19.89198 -19.59344 -19.27178 -18.26250 -17.49734 -17.33258 -17.26890 -16.97818 -16.53872 -15.99430 -15.51968 -15.40745 -15.17456 -14.90664 -14.70293 -14.43784 -14.23740 -14.18155 -13.82839 -13.61268 -13.57184 -13.37859 -13.27848 -13.24502 -13.17170 -12.78225 -12.59649 -12.48405 -12.34088 -12.20143 -12.11607 -12.04181 -11.04955 -10.62608 -10.29685 -10.07315 -9.92489 -9.68699 -8.21813 -6.36778 -0.94323 -0.31695 0.23968 1.48574 1.48920 1.52606 1.60022 1.63357 1.81551 2.43779 2.67547 2.72972 2.84917 2.94212 3.05802 3.29933 3.69524 3.72703 3.89624 4.10664 4.13699 4.33943 4.39304 4.45196 4.52137 4.67256 4.72085 4.77818 4.87698 5.00052 5.06121 5.14862 5.24539 5.29831 5.32782 5.71954 5.75007 5.88044 6.03428 6.32031 6.69535 7.36250 7.58041 8.83404 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.024493 B = 0.003096 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.929942 B = 9042.761045 C = 9420.430773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.278 3.722 3 C -0.042 4.042 4 C -0.050 4.050 5 C -0.107 4.107 6 C -0.078 4.078 7 C -0.110 4.110 8 C -0.560 4.560 9 S 2.628 3.372 10 O -0.978 6.978 11 O -0.990 6.990 12 N -1.045 6.045 13 C 0.105 3.895 14 C 0.219 3.781 15 O -0.577 6.577 16 C -0.551 4.551 17 H 0.073 0.927 18 C 0.031 3.969 19 N -0.918 5.918 20 Si 0.964 3.036 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.268 1.268 24 C 0.137 3.863 25 C -0.071 4.071 26 H 0.167 0.833 27 H 0.180 0.820 28 H 0.157 0.843 29 H 0.154 0.846 30 H 0.168 0.832 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.388 0.612 34 H 0.275 0.725 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.880 13.654 8.901 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.037 4.037 3 C -0.045 4.045 4 C -0.071 4.071 5 C -0.125 4.125 6 C -0.098 4.098 7 C -0.113 4.113 8 C -0.690 4.690 9 S 2.729 3.271 10 O -0.968 6.968 11 O -0.981 6.981 12 N -0.884 5.884 13 C -0.021 4.021 14 C 0.176 3.824 15 O -0.389 6.389 16 C -0.590 4.590 17 H 0.092 0.908 18 C -0.169 4.169 19 N -0.559 5.559 20 Si 0.790 3.210 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.192 1.192 24 C 0.012 3.988 25 C -0.093 4.093 26 H 0.185 0.815 27 H 0.197 0.803 28 H 0.175 0.825 29 H 0.172 0.828 30 H 0.186 0.814 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.244 0.756 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.902 13.878 10.287 17.517 hybrid contribution 0.272 -1.170 -1.753 2.125 sum -2.629 12.708 8.534 15.532 Atomic orbital electron populations 1.81272 1.13198 1.09358 1.09582 1.25826 0.92717 0.92547 0.92582 1.16007 0.83568 1.01445 1.03513 1.21685 0.94905 0.95547 0.94941 1.21567 0.93368 0.98940 0.98619 1.21879 1.02396 0.92449 0.93046 1.18998 0.92968 0.99077 1.00228 1.29461 1.11570 1.15611 1.12405 1.04333 0.72609 0.76266 0.73877 1.93511 1.63780 1.86567 1.52992 1.93513 1.47859 1.72190 1.84570 1.59708 1.19143 1.51498 1.58025 1.23492 1.01418 0.89970 0.87209 1.19979 0.90770 0.85552 0.86100 1.85946 1.90884 1.35758 1.26360 1.21813 1.21018 1.13396 1.02772 0.90846 1.25723 0.94991 0.99480 0.96745 1.69317 1.31090 1.42535 1.12983 0.85452 0.79141 0.79165 0.77224 1.20366 1.20976 1.19248 1.22790 0.81045 1.00869 0.94128 1.21307 0.93654 0.97076 0.97222 0.81507 0.80314 0.82506 0.82818 0.81367 0.90726 0.92556 0.75608 0.91559 0.90064 0.88914 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.46 18.54 19.00 0.35 -12.11 16 2 C 0.28 6.20 15.33 88.33 1.35 7.56 16 3 C -0.04 -0.77 5.73 -21.36 -0.12 -0.89 16 4 C -0.05 -0.59 9.76 22.54 0.22 -0.37 16 5 C -0.11 -1.12 10.03 22.23 0.22 -0.90 16 6 C -0.08 -1.22 9.69 22.33 0.22 -1.00 16 7 C -0.11 -2.30 5.13 -19.91 -0.10 -2.40 16 8 C -0.56 -13.12 6.30 71.24 0.45 -12.67 16 9 S 2.63 86.54 5.94 -56.49 -0.34 86.20 16 10 O -0.98 -34.92 18.07 -127.65 -2.31 -37.23 16 11 O -0.99 -38.67 18.07 -127.65 -2.31 -40.97 16 12 N -1.05 -38.95 4.10 -549.99 -2.25 -41.20 16 13 C 0.11 4.44 8.13 83.26 0.68 5.12 16 14 C 0.22 9.74 1.58 -11.12 -0.02 9.72 16 15 O -0.58 -26.46 13.55 -148.98 -2.02 -28.48 16 16 C -0.55 -26.38 8.70 25.60 0.22 -26.15 16 17 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 18 C 0.03 1.47 5.39 84.65 0.46 1.93 16 19 N -0.92 -45.07 11.01 21.45 0.24 -44.83 16 20 Si 0.96 38.64 29.54 68.60 2.03 40.67 16 21 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 24 C 0.14 5.18 8.10 83.17 0.67 5.86 16 25 C -0.07 -1.50 9.41 22.54 0.21 -1.29 16 26 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 27 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 28 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 29 H 0.15 3.42 8.08 -2.39 -0.02 3.40 16 30 H 0.17 3.25 8.08 -2.39 -0.02 3.23 16 31 H 0.07 3.15 8.10 -2.39 -0.02 3.13 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.39 18.76 6.32 -74.06 -0.47 18.29 16 34 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 35 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 36 H 0.09 3.32 8.10 -2.39 -0.02 3.30 16 37 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -64.58 346.75 -1.50 -66.07 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.65 Total: 27.37 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 4.46 Total: -15.49 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -1.67 Total: -98.14 kcal Atomic # 8 Polarization: -100.05 SS G_CDS: -6.63 Total: -106.68 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 16 Polarization: 86.54 SS G_CDS: -0.34 Total: 86.20 kcal Total: -64.58 -1.50 -66.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189060178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.942 kcal (2) G-P(sol) polarization free energy of solvation -64.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds