Wall clock time and date at job start Fri Apr 10 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39783 * 120.07674 * 125.73032 * 3 2 1 5 5 C 1.37694 * 119.94083 * 179.69933 * 4 3 2 6 6 C 1.39078 * 120.09422 * 0.54627 * 5 4 3 7 7 N 1.39599 * 119.92406 * 179.72024 * 6 5 4 8 8 C 1.34772 * 119.99620 * 34.79831 * 7 6 5 9 9 O 1.21586 * 120.00325 * 355.46415 * 8 7 6 10 10 N 1.34780 * 120.00123 * 175.19673 * 8 7 6 11 11 C 1.46497 * 120.00220 * 180.27392 * 10 8 7 12 12 C 1.50704 * 109.46776 * 180.02562 * 11 10 8 13 13 O 1.21294 * 120.00100 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99550 * 180.02562 * 12 11 10 15 15 C 1.37106 * 119.99945 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99506 * 359.97438 * 15 14 12 17 17 C 1.38946 * 119.99855 * 180.02562 * 15 14 12 18 18 N 1.31416 * 119.99573 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00275 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47466 * 90.00279 * 19 17 15 21 21 H 1.48511 * 109.46970 * 210.00270 * 19 17 15 22 22 H 1.48497 * 109.47043 * 329.99964 * 19 17 15 23 23 C 1.39189 * 120.15161 * 359.45089 * 6 5 4 24 24 Cl 1.73599 * 119.96850 * 180.29493 * 23 6 5 25 25 C 1.37802 * 120.05823 * 0.27461 * 23 6 5 26 26 H 1.08009 * 120.02818 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.95288 * 180.26674 * 5 4 3 28 28 H 0.96995 * 119.99909 * 214.79321 * 7 6 5 29 29 H 0.97003 * 119.99642 * 0.26911 * 10 8 7 30 30 H 1.09001 * 109.46812 * 299.99605 * 11 10 8 31 31 H 1.08995 * 109.47170 * 60.00138 * 11 10 8 32 32 H 0.97004 * 120.00720 * 359.97438 * 14 12 11 33 33 H 0.96996 * 119.99818 * 179.97438 * 18 17 15 34 34 H 1.08000 * 120.04623 * 179.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.7073 -0.9819 5 6 4.6452 0.7111 -0.9756 6 6 5.3400 0.0036 -0.0005 7 7 6.7360 0.0051 -0.0009 8 6 7.4085 1.1080 -0.3853 9 8 6.8022 2.0727 -0.8098 10 7 8.7527 1.1437 -0.2942 11 6 9.4833 2.3448 -0.7063 12 6 10.9611 2.1271 -0.5064 13 8 11.3642 1.0727 -0.0628 14 7 11.8345 3.1046 -0.8196 15 6 13.1789 2.9069 -0.6373 16 1 13.5379 1.9680 -0.2423 17 6 14.0793 3.9148 -0.9597 18 7 15.3679 3.7254 -0.7844 19 14 13.4583 5.5389 -1.6421 20 1 13.1915 6.4769 -0.5222 21 1 14.4851 6.1225 -2.5426 22 1 12.2048 5.3086 -2.4043 23 6 4.6468 -0.7014 0.9791 24 17 5.5189 -1.5766 2.1986 25 6 3.2687 -0.7049 0.9821 26 1 2.7297 1.2536 -1.7423 27 1 5.1863 1.2606 -1.7316 28 1 7.2219 -0.7875 0.2754 29 1 9.2364 0.3741 0.0444 30 1 9.2853 2.5471 -1.7589 31 1 9.1560 3.1932 -0.1054 32 1 11.5121 3.9480 -1.1740 33 1 15.9965 4.4288 -1.0098 34 1 2.7310 -1.2523 1.7421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350160203.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:26 Heat of formation + Delta-G solvation = -4.703456 kcal Electronic energy + Delta-G solvation = -22671.465750 eV Core-core repulsion = 18823.962743 eV Total energy + Delta-G solvation = -3847.503008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.062 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09425 -39.50797 -38.49527 -37.21332 -36.62014 -35.11270 -34.71777 -33.93465 -31.88520 -31.41901 -30.55374 -27.87110 -24.84808 -23.84692 -23.43207 -21.13723 -19.81951 -19.52085 -19.04021 -18.62906 -17.89161 -16.36408 -15.93186 -15.67104 -15.49060 -15.25032 -15.01598 -14.67473 -14.41572 -14.30782 -14.12675 -14.04440 -13.47010 -13.26493 -13.21065 -12.83185 -12.60705 -12.34314 -12.25679 -12.05425 -11.82874 -11.46223 -11.29949 -10.80628 -10.70182 -10.35725 -10.12651 -9.77208 -9.38416 -9.20169 -8.87602 -8.54826 -8.37893 -6.47254 -4.00420 0.19553 0.68069 1.56256 2.21435 2.31917 2.40564 2.93343 2.95750 2.99156 3.08092 3.37389 3.46755 3.47192 3.87574 3.97763 4.22874 4.44078 4.47980 4.70666 4.84442 5.07187 5.18866 5.41187 5.50069 5.61024 5.64882 5.69205 5.70798 5.90923 6.31556 6.33850 6.56292 7.09397 7.36937 7.71352 7.92863 8.25817 8.37774 8.74498 9.22131 9.54283 10.64649 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.025695 B = 0.002324 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.448021 B =12042.757321 C =12970.940436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.260 3.740 3 C -0.044 4.044 4 C -0.042 4.042 5 C -0.114 4.114 6 C 0.220 3.780 7 N -0.684 5.684 8 C 0.708 3.292 9 O -0.575 6.575 10 N -0.713 5.713 11 C 0.124 3.876 12 C 0.435 3.565 13 O -0.579 6.579 14 N -0.573 5.573 15 C -0.311 4.311 16 H 0.122 0.878 17 C 0.046 3.954 18 N -0.872 5.872 19 Si 0.880 3.120 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.267 1.267 23 C -0.076 4.076 24 Cl -0.051 7.051 25 C -0.040 4.040 26 H 0.143 0.857 27 H 0.164 0.836 28 H 0.414 0.586 29 H 0.412 0.588 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.375 0.625 33 H 0.276 0.724 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.354 -6.869 0.760 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.055 4.055 3 C -0.049 4.049 4 C -0.064 4.064 5 C -0.134 4.134 6 C 0.120 3.880 7 N -0.331 5.331 8 C 0.408 3.592 9 O -0.452 6.452 10 N -0.370 5.370 11 C -0.004 4.004 12 C 0.221 3.779 13 O -0.464 6.464 14 N -0.211 5.211 15 C -0.440 4.440 16 H 0.140 0.860 17 C -0.159 4.159 18 N -0.510 5.510 19 Si 0.706 3.294 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.192 1.192 23 C -0.106 4.106 24 Cl -0.022 7.022 25 C -0.062 4.062 26 H 0.161 0.839 27 H 0.182 0.818 28 H 0.252 0.748 29 H 0.250 0.750 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.208 0.792 33 H 0.087 0.913 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.893 -6.636 0.769 23.848 hybrid contribution 0.819 0.525 -0.062 0.975 sum -22.074 -6.111 0.707 22.915 Atomic orbital electron populations 1.81281 1.11947 1.08382 1.07684 1.25495 0.92368 0.93763 0.93885 1.15788 0.84530 1.04806 0.99807 1.21201 0.93629 0.95192 0.96328 1.21353 0.93375 1.00231 0.98462 1.17445 0.82491 0.95777 0.92274 1.42615 1.04155 1.16383 1.69915 1.15730 0.82101 0.82430 0.78949 1.90922 1.67471 1.35122 1.51699 1.44762 1.04015 1.19789 1.68385 1.20908 0.90897 0.87060 1.01548 1.19574 0.86726 0.85877 0.85698 1.90548 1.78917 1.26689 1.50232 1.42107 1.07404 1.14362 1.57192 1.19435 0.78742 1.04143 1.41669 0.86042 1.25082 0.95123 0.98413 0.97286 1.69617 1.00999 1.34255 1.46174 0.86665 0.79178 0.83803 0.79802 1.19350 1.19945 1.19190 1.20497 0.92275 1.04197 0.93646 1.98403 1.75999 1.74518 1.53256 1.20781 0.91199 0.96825 0.97363 0.83915 0.81816 0.74815 0.74982 0.89419 0.89420 0.79191 0.91303 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.62 18.54 41.84 0.78 -3.84 16 2 C 0.26 2.25 15.33 -22.47 -0.34 1.91 16 3 C -0.04 -0.31 5.74 -106.82 -0.61 -0.93 16 4 C -0.04 -0.29 9.75 -39.20 -0.38 -0.67 16 5 C -0.11 -0.98 8.67 -39.47 -0.34 -1.32 16 6 C 0.22 1.97 6.30 -83.66 -0.53 1.44 16 7 N -0.68 -6.53 5.03 -14.18 -0.07 -6.61 16 8 C 0.71 8.91 8.40 -86.92 -0.73 8.18 16 9 O -0.57 -8.47 13.74 5.29 0.07 -8.40 16 10 N -0.71 -9.63 5.53 -66.42 -0.37 -9.99 16 11 C 0.12 1.88 6.15 -5.19 -0.03 1.84 16 12 C 0.44 8.82 7.85 -10.98 -0.09 8.73 16 13 O -0.58 -13.66 15.24 5.55 0.08 -13.58 16 14 N -0.57 -12.52 5.09 -10.96 -0.06 -12.58 16 15 C -0.31 -8.23 10.16 -14.93 -0.15 -8.38 16 16 H 0.12 3.68 7.39 -52.49 -0.39 3.29 16 17 C 0.05 1.18 5.50 -17.47 -0.10 1.08 16 18 N -0.87 -24.18 13.96 55.50 0.77 -23.40 16 19 Si 0.88 18.22 27.74 -169.99 -4.71 13.51 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 22 H -0.27 -4.99 6.52 56.52 0.37 -4.62 16 23 C -0.08 -0.59 6.33 -39.39 -0.25 -0.84 16 24 Cl -0.05 -0.39 27.93 -51.86 -1.45 -1.84 16 25 C -0.04 -0.27 9.52 -39.17 -0.37 -0.64 16 26 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 27 H 0.16 1.60 6.18 -52.49 -0.32 1.28 16 28 H 0.41 3.21 8.08 -40.82 -0.33 2.88 16 29 H 0.41 5.48 7.46 -40.82 -0.30 5.18 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.37 7.16 5.76 -40.82 -0.24 6.93 16 33 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -31.57 328.81 -6.36 -37.93 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -2.44 Total: 13.43 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -3.93 Total: 10.41 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 1.06 Total: -56.42 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.16 Total: -21.98 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -4.71 Total: 13.51 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.45 Total: -1.84 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.57 -6.36 -37.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350160203.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.226 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds