Wall clock time and date at job start Fri Apr 10 2020 18:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39783 * 120.07674 * 125.73032 * 3 2 1 5 5 C 1.37694 * 119.94083 * 179.69933 * 4 3 2 6 6 C 1.39078 * 120.09422 * 0.54627 * 5 4 3 7 7 N 1.39599 * 119.92406 * 179.72024 * 6 5 4 8 8 C 1.34772 * 119.99620 * 34.79831 * 7 6 5 9 9 O 1.21586 * 120.00325 * 355.46415 * 8 7 6 10 10 N 1.34780 * 120.00123 * 175.19673 * 8 7 6 11 11 C 1.46497 * 120.00220 * 180.27392 * 10 8 7 12 12 C 1.50704 * 109.46776 * 180.02562 * 11 10 8 13 13 O 1.21294 * 120.00100 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99550 * 180.02562 * 12 11 10 15 15 C 1.37106 * 119.99945 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99506 * 359.97438 * 15 14 12 17 17 C 1.38946 * 119.99855 * 180.02562 * 15 14 12 18 18 N 1.31416 * 119.99573 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00275 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47466 * 90.00279 * 19 17 15 21 21 H 1.48511 * 109.46970 * 210.00270 * 19 17 15 22 22 H 1.48497 * 109.47043 * 329.99964 * 19 17 15 23 23 C 1.39189 * 120.15161 * 359.45089 * 6 5 4 24 24 Cl 1.73599 * 119.96850 * 180.29493 * 23 6 5 25 25 C 1.37802 * 120.05823 * 0.27461 * 23 6 5 26 26 H 1.08009 * 120.02818 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.95288 * 180.26674 * 5 4 3 28 28 H 0.96995 * 119.99909 * 214.79321 * 7 6 5 29 29 H 0.97003 * 119.99642 * 0.26911 * 10 8 7 30 30 H 1.09001 * 109.46812 * 299.99605 * 11 10 8 31 31 H 1.08995 * 109.47170 * 60.00138 * 11 10 8 32 32 H 0.97004 * 120.00720 * 359.97438 * 14 12 11 33 33 H 0.96996 * 119.99818 * 179.97438 * 18 17 15 34 34 H 1.08000 * 120.04623 * 179.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.7073 -0.9819 5 6 4.6452 0.7111 -0.9756 6 6 5.3400 0.0036 -0.0005 7 7 6.7360 0.0051 -0.0009 8 6 7.4085 1.1080 -0.3853 9 8 6.8022 2.0727 -0.8098 10 7 8.7527 1.1437 -0.2942 11 6 9.4833 2.3448 -0.7063 12 6 10.9611 2.1271 -0.5064 13 8 11.3642 1.0727 -0.0628 14 7 11.8345 3.1046 -0.8196 15 6 13.1789 2.9069 -0.6373 16 1 13.5379 1.9680 -0.2423 17 6 14.0793 3.9148 -0.9597 18 7 15.3679 3.7254 -0.7844 19 14 13.4583 5.5389 -1.6421 20 1 13.1915 6.4769 -0.5222 21 1 14.4851 6.1225 -2.5426 22 1 12.2048 5.3086 -2.4043 23 6 4.6468 -0.7014 0.9791 24 17 5.5189 -1.5766 2.1986 25 6 3.2687 -0.7049 0.9821 26 1 2.7297 1.2536 -1.7423 27 1 5.1863 1.2606 -1.7316 28 1 7.2219 -0.7875 0.2754 29 1 9.2364 0.3741 0.0444 30 1 9.2853 2.5471 -1.7589 31 1 9.1560 3.1932 -0.1054 32 1 11.5121 3.9480 -1.1740 33 1 15.9965 4.4288 -1.0098 34 1 2.7310 -1.2523 1.7421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350160203.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:25 Heat of formation + Delta-G solvation = -27.624797 kcal Electronic energy + Delta-G solvation = -22672.459694 eV Core-core repulsion = 18823.962743 eV Total energy + Delta-G solvation = -3848.496952 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.062 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94935 -40.57502 -39.87465 -37.90963 -37.32163 -36.30420 -35.88352 -35.39575 -33.80802 -32.01831 -31.34495 -29.19653 -26.38026 -24.81376 -24.06285 -22.08224 -21.45549 -20.62109 -20.16501 -19.72205 -18.91083 -17.48147 -17.18896 -16.85923 -16.55800 -16.35030 -16.11060 -15.84253 -15.53257 -15.20988 -14.95470 -14.81689 -14.77297 -14.31201 -14.23394 -14.00513 -13.95545 -13.69585 -13.47547 -12.94821 -12.70848 -12.45514 -12.41765 -12.08705 -11.98020 -11.62903 -11.55022 -11.28284 -10.62977 -10.32979 -10.24621 -9.96486 -9.27142 -8.43065 -6.05129 -0.44829 0.10088 0.94307 1.31136 1.34351 1.36957 1.47027 1.62581 1.66056 1.82861 2.06858 2.23113 2.72126 2.73816 2.81502 3.10287 3.13639 3.63836 3.94365 3.99052 4.07343 4.23458 4.44087 4.48074 4.59157 4.83238 4.96990 5.11185 5.16996 5.28803 5.50428 5.64841 5.71811 5.91119 6.41804 6.51096 6.75338 6.81596 7.26487 7.34089 7.81437 8.73249 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.025695 B = 0.002324 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.448021 B =12042.757321 C =12970.940436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.285 3.715 3 C -0.042 4.042 4 C -0.029 4.029 5 C -0.122 4.122 6 C 0.205 3.795 7 N -0.674 5.674 8 C 0.712 3.288 9 O -0.594 6.594 10 N -0.718 5.718 11 C 0.138 3.862 12 C 0.445 3.555 13 O -0.615 6.615 14 N -0.578 5.578 15 C -0.330 4.330 16 H 0.063 0.937 17 C -0.010 4.010 18 N -0.927 5.927 19 Si 0.959 3.041 20 H -0.258 1.258 21 H -0.276 1.276 22 H -0.228 1.228 23 C -0.077 4.077 24 Cl -0.050 7.050 25 C -0.030 4.030 26 H 0.164 0.836 27 H 0.154 0.846 28 H 0.422 0.578 29 H 0.412 0.588 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.393 0.607 33 H 0.280 0.720 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.017 -5.645 0.097 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.029 4.029 3 C -0.046 4.046 4 C -0.050 4.050 5 C -0.142 4.142 6 C 0.107 3.893 7 N -0.322 5.322 8 C 0.413 3.587 9 O -0.473 6.473 10 N -0.374 5.374 11 C 0.010 3.990 12 C 0.232 3.768 13 O -0.501 6.501 14 N -0.218 5.218 15 C -0.459 4.459 16 H 0.081 0.919 17 C -0.210 4.210 18 N -0.567 5.567 19 Si 0.779 3.221 20 H -0.182 1.182 21 H -0.202 1.202 22 H -0.152 1.152 23 C -0.107 4.107 24 Cl -0.022 7.022 25 C -0.051 4.051 26 H 0.181 0.819 27 H 0.172 0.828 28 H 0.261 0.739 29 H 0.250 0.750 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.229 0.771 33 H 0.090 0.910 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.606 -5.451 0.115 26.180 hybrid contribution 1.597 -0.033 0.215 1.612 sum -24.009 -5.484 0.330 24.630 Atomic orbital electron populations 1.81318 1.13192 1.09886 1.09120 1.25540 0.92301 0.92478 0.92602 1.15752 0.83656 1.05107 1.00126 1.21354 0.92978 0.94373 0.96302 1.21285 0.93969 1.00556 0.98414 1.17616 0.82046 0.96636 0.93042 1.42447 1.04540 1.15859 1.69325 1.15686 0.81547 0.82818 0.78680 1.90913 1.67685 1.36073 1.52621 1.44715 1.04477 1.19364 1.68893 1.20790 0.86555 0.88299 1.03406 1.20551 0.88813 0.84564 0.82871 1.90540 1.80338 1.28248 1.50973 1.41910 1.05797 1.15702 1.58360 1.19013 0.81332 1.02610 1.42910 0.91882 1.26089 0.94881 1.02949 0.97092 1.69787 1.02870 1.36136 1.47903 0.85442 0.79944 0.77290 0.79427 1.18211 1.20159 1.15153 1.20476 0.92552 1.04151 0.93473 1.98409 1.76074 1.74482 1.53191 1.20961 0.90778 0.96072 0.97310 0.81873 0.82850 0.73878 0.74970 0.87145 0.87377 0.77141 0.91012 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.51 18.54 19.00 0.35 -9.16 16 2 C 0.29 4.35 15.33 88.33 1.35 5.70 16 3 C -0.04 -0.48 5.74 -21.29 -0.12 -0.60 16 4 C -0.03 -0.32 9.75 22.51 0.22 -0.10 16 5 C -0.12 -1.84 8.67 22.34 0.19 -1.65 16 6 C 0.21 3.29 6.30 38.33 0.24 3.53 16 7 N -0.67 -11.79 5.03 -317.04 -1.60 -13.39 16 8 C 0.71 16.58 8.40 179.05 1.50 18.08 16 9 O -0.59 -16.17 13.74 -3.99 -0.05 -16.22 16 10 N -0.72 -18.15 5.53 -482.30 -2.67 -20.82 16 11 C 0.14 3.82 6.15 85.63 0.53 4.34 16 12 C 0.44 17.70 7.85 87.66 0.69 18.38 16 13 O -0.62 -29.55 15.24 -3.07 -0.05 -29.59 16 14 N -0.58 -24.81 5.09 -306.98 -1.56 -26.38 16 15 C -0.33 -17.98 10.16 84.04 0.85 -17.13 16 16 H 0.06 4.10 7.39 -2.91 -0.02 4.07 16 17 C -0.01 -0.54 5.50 84.92 0.47 -0.07 16 18 N -0.93 -53.31 13.96 21.66 0.30 -53.01 16 19 Si 0.96 36.52 27.74 68.60 1.90 38.42 16 20 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 21 H -0.28 -10.59 7.11 99.48 0.71 -9.89 16 22 H -0.23 -7.22 6.52 99.48 0.65 -6.57 16 23 C -0.08 -1.03 6.33 22.40 0.14 -0.89 16 24 Cl -0.05 -0.69 27.93 -2.72 -0.08 -0.77 16 25 C -0.03 -0.32 9.52 22.54 0.21 -0.11 16 26 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 27 H 0.15 2.74 6.18 -2.91 -0.02 2.72 16 28 H 0.42 5.96 8.08 -92.71 -0.75 5.21 16 29 H 0.41 10.59 7.46 -92.71 -0.69 9.90 16 30 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.39 13.93 5.76 -92.71 -0.53 13.40 16 33 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 34 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -71.75 328.81 2.03 -69.72 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: -0.81 Total: 31.70 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 6.28 Total: 29.49 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -5.17 Total: -122.74 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.10 Total: -45.81 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 1.90 Total: 38.42 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -71.75 2.03 -69.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350160203.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.092 kcal (2) G-P(sol) polarization free energy of solvation -71.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds