Wall clock time and date at job start Fri Apr 10 2020 18:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47030 * 141.79248 * 3 2 1 5 5 C 1.36935 * 119.99950 * 272.79603 * 4 3 2 6 6 H 1.08004 * 120.00392 * 189.42574 * 5 4 3 7 7 C 1.38814 * 120.00236 * 9.42677 * 5 4 3 8 8 N 1.31623 * 119.99519 * 13.57761 * 7 5 4 9 9 Si 1.86795 * 120.00315 * 193.57816 * 7 5 4 10 10 H 1.48505 * 109.46796 * 90.00071 * 9 7 5 11 11 H 1.48498 * 109.47204 * 209.99852 * 9 7 5 12 12 H 1.48495 * 109.47345 * 330.00026 * 9 7 5 13 13 S 1.65605 * 120.00072 * 92.79636 * 4 3 2 14 14 O 1.42100 * 106.40047 * 156.46071 * 13 4 3 15 15 O 1.42098 * 106.40255 * 23.54064 * 13 4 3 16 16 C 1.76202 * 107.21595 * 269.99713 * 13 4 3 17 17 C 1.38283 * 119.93434 * 270.27539 * 16 13 4 18 18 C 1.38105 * 120.07065 * 180.32112 * 17 16 13 19 19 C 1.38877 * 119.92898 * 359.42915 * 18 17 16 20 20 N 1.39921 * 120.06807 * 180.29314 * 19 18 17 21 21 C 1.34776 * 119.99802 * 143.90363 * 20 19 18 22 22 C 1.50701 * 120.00358 * 184.40360 * 21 20 19 23 23 O 1.21284 * 120.00245 * 4.40090 * 21 20 19 24 24 C 1.38872 * 119.85764 * 0.27612 * 19 18 17 25 25 C 1.38108 * 119.92935 * 359.97438 * 24 19 18 26 26 H 4.40644 * 5.51385 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.47318 * 21.78671 * 3 2 1 28 28 H 1.08999 * 109.46803 * 261.78851 * 3 2 1 29 29 H 0.97003 * 119.99954 * 179.97438 * 8 7 5 30 30 H 1.07998 * 119.96107 * 0.05141 * 17 16 13 31 31 H 1.08003 * 120.03365 * 179.69898 * 18 17 16 32 32 H 0.96994 * 120.00539 * 323.90678 * 20 19 18 33 33 H 1.09001 * 109.47041 * 0.02562 * 22 21 20 34 34 H 1.08999 * 109.47178 * 119.99631 * 22 21 20 35 35 H 1.09000 * 109.47298 * 240.00253 * 22 21 20 36 36 H 1.07998 * 120.02842 * 180.02562 * 24 19 18 37 37 H 1.08004 * 119.96373 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0862 -0.8543 5 6 3.3076 0.8760 -2.1962 6 1 3.8076 1.6197 -2.7991 7 6 2.8411 -0.2929 -2.7818 8 7 2.0077 -1.0711 -2.1244 9 14 3.3963 -0.7615 -4.5028 10 1 4.6265 -1.5889 -4.4178 11 1 2.3233 -1.5374 -5.1749 12 1 3.6803 0.4693 -5.2836 13 16 3.4751 2.5675 -0.1971 14 8 4.4024 3.1916 -1.0745 15 8 3.7388 2.3438 1.1812 16 6 1.9975 3.5243 -0.2723 17 6 1.7343 4.3011 -1.3857 18 6 0.5802 5.0573 -1.4447 19 6 -0.3222 5.0279 -0.3895 20 7 -1.4953 5.7882 -0.4490 21 6 -2.6380 5.3065 0.0790 22 6 -3.9226 6.0798 -0.0719 23 8 -2.6325 4.2505 0.6755 24 6 -0.0579 4.2421 0.7245 25 6 1.1005 3.4922 0.7797 26 1 -1.0502 -0.0002 0.0004 27 1 3.0098 -0.9534 -0.3814 28 1 3.0092 0.1476 1.0171 29 1 1.6814 -1.8878 -2.5338 30 1 2.4341 4.3197 -2.2080 31 1 0.3776 5.6675 -2.3125 32 1 -1.4863 6.6619 -0.8702 33 1 -3.7321 6.9947 -0.6329 34 1 -4.6523 5.4716 -0.6064 35 1 -4.3126 6.3324 0.9141 36 1 -0.7580 4.2168 1.5465 37 1 1.3064 2.8805 1.6456 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382931880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:54 Heat of formation + Delta-G solvation = -1.794190 kcal Electronic energy + Delta-G solvation = -25141.642227 eV Core-core repulsion = 21399.849425 eV Total energy + Delta-G solvation = -3741.792803 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41503 -38.11503 -36.30092 -35.92299 -34.76487 -34.49337 -31.92688 -31.07347 -30.93041 -30.55731 -28.47460 -26.56084 -23.78174 -22.98282 -22.39625 -20.50788 -18.59200 -18.00253 -17.79294 -17.18001 -16.97415 -16.54597 -16.11454 -15.62437 -14.78185 -14.53980 -14.34741 -14.04432 -13.90942 -13.37629 -13.32044 -13.05938 -13.03631 -12.73806 -12.49589 -12.42850 -12.20267 -11.63551 -11.23561 -11.09395 -11.03362 -10.81979 -10.78135 -10.45841 -10.35572 -10.29702 -10.11287 -9.79853 -9.57993 -9.14870 -8.80202 -8.54019 -8.25297 -8.09234 -6.48565 -3.98597 1.25024 1.71628 1.81339 2.46825 2.98253 3.11554 3.16787 3.20424 3.77826 4.03555 4.05577 4.25532 4.53280 4.64299 4.77237 4.83978 5.08005 5.09448 5.14320 5.30489 5.45414 5.55927 5.67369 5.71116 5.87263 6.02484 6.26779 6.36117 6.42446 6.53854 6.71901 6.81043 6.85863 7.09143 7.22381 7.28809 7.35423 7.38426 7.99478 8.21974 8.61356 8.98481 9.03924 10.40580 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.004723 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.742590 B = 5927.322620 C = 6349.269725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.110 4.110 3 C 0.237 3.763 4 N -0.801 5.801 5 C -0.248 4.248 6 H 0.121 0.879 7 C 0.026 3.974 8 N -0.831 5.831 9 Si 0.933 3.067 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.265 1.265 13 S 2.549 3.451 14 O -0.983 6.983 15 O -0.996 6.996 16 C -0.668 4.668 17 C -0.007 4.007 18 C -0.170 4.170 19 C 0.164 3.836 20 N -0.675 5.675 21 C 0.506 3.494 22 C -0.168 4.168 23 O -0.521 6.521 24 C -0.143 4.143 25 C -0.008 4.008 26 H 0.194 0.806 27 H 0.128 0.872 28 H 0.076 0.924 29 H 0.275 0.725 30 H 0.137 0.863 31 H 0.123 0.877 32 H 0.409 0.591 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.148 9.847 0.173 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.113 4.113 3 C 0.112 3.888 4 N -0.624 5.624 5 C -0.393 4.393 6 H 0.139 0.861 7 C -0.184 4.184 8 N -0.471 5.471 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.190 1.190 13 S 2.646 3.354 14 O -0.972 6.972 15 O -0.985 6.985 16 C -0.747 4.747 17 C -0.027 4.027 18 C -0.191 4.191 19 C 0.071 3.929 20 N -0.321 5.321 21 C 0.294 3.706 22 C -0.227 4.227 23 O -0.396 6.396 24 C -0.164 4.164 25 C -0.028 4.028 26 H 0.211 0.789 27 H 0.146 0.854 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.154 0.846 31 H 0.141 0.859 32 H 0.245 0.755 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.152 0.848 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.517 9.444 1.104 12.121 hybrid contribution -1.295 0.464 -1.390 1.956 sum -8.813 9.908 -0.286 13.263 Atomic orbital electron populations 1.24212 0.95303 1.03078 1.06183 1.23415 0.94545 0.97897 0.95394 1.18589 0.83827 0.93643 0.92767 1.54858 1.72719 1.18928 1.15898 1.20072 1.29735 1.04689 0.84850 0.86119 1.25587 0.95289 0.97440 1.00074 1.70140 1.26571 1.13325 1.37078 0.85807 0.78420 0.79219 0.80725 1.19783 1.20765 1.18958 1.10426 0.77967 0.73396 0.73617 1.93362 1.61851 1.76312 1.65716 1.93360 1.85780 1.85179 1.34208 1.32369 1.26725 1.15047 1.00548 1.20657 0.94927 0.91109 0.95977 1.20915 0.96621 1.04171 0.97400 1.17852 0.86124 0.94630 0.94328 1.43706 1.08056 1.20955 1.59367 1.21015 0.85247 0.86207 0.78163 1.21846 0.94906 1.00917 1.05060 1.90778 1.86075 1.22921 1.39810 1.21217 0.97973 0.99575 0.97602 1.20737 0.91218 0.94247 0.96570 0.78877 0.85438 0.90613 0.91401 0.84560 0.85873 0.75522 0.90442 0.88360 0.88462 0.84787 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.96 19.25 29.55 0.57 -5.39 16 2 C -0.11 -2.56 11.34 -37.12 -0.42 -2.98 16 3 C 0.24 5.43 5.44 -6.83 -0.04 5.39 16 4 N -0.80 -19.16 2.88 -62.78 -0.18 -19.34 16 5 C -0.25 -6.04 9.56 -15.06 -0.14 -6.19 16 6 H 0.12 2.89 7.12 -52.48 -0.37 2.52 16 7 C 0.03 0.62 5.18 -17.43 -0.09 0.53 16 8 N -0.83 -19.99 8.46 55.49 0.47 -19.52 16 9 Si 0.93 18.57 29.57 -169.99 -5.03 13.54 16 10 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 11 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 12 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 13 S 2.55 59.69 5.65 -107.50 -0.61 59.08 16 14 O -0.98 -24.54 16.05 -57.17 -0.92 -25.46 16 15 O -1.00 -24.41 15.85 -57.17 -0.91 -25.31 16 16 C -0.67 -14.32 5.97 -39.55 -0.24 -14.55 16 17 C -0.01 -0.14 9.51 -39.61 -0.38 -0.51 16 18 C -0.17 -2.79 9.97 -39.39 -0.39 -3.18 16 19 C 0.16 2.70 6.28 -83.69 -0.53 2.17 16 20 N -0.67 -8.04 5.33 -9.86 -0.05 -8.10 16 21 C 0.51 6.30 7.78 -10.99 -0.09 6.22 16 22 C -0.17 -1.15 10.39 36.01 0.37 -0.77 16 23 O -0.52 -9.09 14.61 5.55 0.08 -9.01 16 24 C -0.14 -2.67 8.69 -39.39 -0.34 -3.02 16 25 C -0.01 -0.16 9.51 -39.61 -0.38 -0.54 16 26 H 0.19 3.75 7.80 -54.08 -0.42 3.33 16 27 H 0.13 2.95 6.17 -51.93 -0.32 2.63 16 28 H 0.08 1.62 6.96 -51.93 -0.36 1.26 16 29 H 0.27 6.30 8.31 -40.82 -0.34 5.97 16 30 H 0.14 2.53 7.62 -52.49 -0.40 2.13 16 31 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 32 H 0.41 3.13 8.67 -40.82 -0.35 2.78 16 33 H 0.08 0.31 7.92 -51.93 -0.41 -0.10 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.13 2.46 6.31 -52.49 -0.33 2.13 16 37 H 0.13 2.65 7.61 -52.48 -0.40 2.25 16 LS Contribution 337.43 15.07 5.09 5.09 Total: -1.00 -32.57 337.43 -7.92 -40.49 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -3.78 Total: 11.37 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -2.09 Total: -22.83 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.24 Total: -46.95 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -1.74 Total: -59.78 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: 59.69 SS G_CDS: -0.61 Total: 59.08 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.57 -7.92 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382931880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.691 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds