Wall clock time and date at job start Fri Apr 10 2020 18:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47030 * 141.79248 * 3 2 1 5 5 C 1.36935 * 119.99950 * 272.79603 * 4 3 2 6 6 H 1.08004 * 120.00392 * 189.42574 * 5 4 3 7 7 C 1.38814 * 120.00236 * 9.42677 * 5 4 3 8 8 N 1.31623 * 119.99519 * 13.57761 * 7 5 4 9 9 Si 1.86795 * 120.00315 * 193.57816 * 7 5 4 10 10 H 1.48505 * 109.46796 * 90.00071 * 9 7 5 11 11 H 1.48498 * 109.47204 * 209.99852 * 9 7 5 12 12 H 1.48495 * 109.47345 * 330.00026 * 9 7 5 13 13 S 1.65605 * 120.00072 * 92.79636 * 4 3 2 14 14 O 1.42100 * 106.40047 * 156.46071 * 13 4 3 15 15 O 1.42098 * 106.40255 * 23.54064 * 13 4 3 16 16 C 1.76202 * 107.21595 * 269.99713 * 13 4 3 17 17 C 1.38283 * 119.93434 * 270.27539 * 16 13 4 18 18 C 1.38105 * 120.07065 * 180.32112 * 17 16 13 19 19 C 1.38877 * 119.92898 * 359.42915 * 18 17 16 20 20 N 1.39921 * 120.06807 * 180.29314 * 19 18 17 21 21 C 1.34776 * 119.99802 * 143.90363 * 20 19 18 22 22 C 1.50701 * 120.00358 * 184.40360 * 21 20 19 23 23 O 1.21284 * 120.00245 * 4.40090 * 21 20 19 24 24 C 1.38872 * 119.85764 * 0.27612 * 19 18 17 25 25 C 1.38108 * 119.92935 * 359.97438 * 24 19 18 26 26 H 4.40644 * 5.51385 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.47318 * 21.78671 * 3 2 1 28 28 H 1.08999 * 109.46803 * 261.78851 * 3 2 1 29 29 H 0.97003 * 119.99954 * 179.97438 * 8 7 5 30 30 H 1.07998 * 119.96107 * 0.05141 * 17 16 13 31 31 H 1.08003 * 120.03365 * 179.69898 * 18 17 16 32 32 H 0.96994 * 120.00539 * 323.90678 * 20 19 18 33 33 H 1.09001 * 109.47041 * 0.02562 * 22 21 20 34 34 H 1.08999 * 109.47178 * 119.99631 * 22 21 20 35 35 H 1.09000 * 109.47298 * 240.00253 * 22 21 20 36 36 H 1.07998 * 120.02842 * 180.02562 * 24 19 18 37 37 H 1.08004 * 119.96373 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0862 -0.8543 5 6 3.3076 0.8760 -2.1962 6 1 3.8076 1.6197 -2.7991 7 6 2.8411 -0.2929 -2.7818 8 7 2.0077 -1.0711 -2.1244 9 14 3.3963 -0.7615 -4.5028 10 1 4.6265 -1.5889 -4.4178 11 1 2.3233 -1.5374 -5.1749 12 1 3.6803 0.4693 -5.2836 13 16 3.4751 2.5675 -0.1971 14 8 4.4024 3.1916 -1.0745 15 8 3.7388 2.3438 1.1812 16 6 1.9975 3.5243 -0.2723 17 6 1.7343 4.3011 -1.3857 18 6 0.5802 5.0573 -1.4447 19 6 -0.3222 5.0279 -0.3895 20 7 -1.4953 5.7882 -0.4490 21 6 -2.6380 5.3065 0.0790 22 6 -3.9226 6.0798 -0.0719 23 8 -2.6325 4.2505 0.6755 24 6 -0.0579 4.2421 0.7245 25 6 1.1005 3.4922 0.7797 26 1 -1.0502 -0.0002 0.0004 27 1 3.0098 -0.9534 -0.3814 28 1 3.0092 0.1476 1.0171 29 1 1.6814 -1.8878 -2.5338 30 1 2.4341 4.3197 -2.2080 31 1 0.3776 5.6675 -2.3125 32 1 -1.4863 6.6619 -0.8702 33 1 -3.7321 6.9947 -0.6329 34 1 -4.6523 5.4716 -0.6064 35 1 -4.3126 6.3324 0.9141 36 1 -0.7580 4.2168 1.5465 37 1 1.3064 2.8805 1.6456 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382931880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:53 Heat of formation + Delta-G solvation = -24.392843 kcal Electronic energy + Delta-G solvation = -25142.622178 eV Core-core repulsion = 21399.849425 eV Total energy + Delta-G solvation = -3742.772754 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.57162 -39.45404 -38.09710 -37.87649 -36.48692 -35.95744 -33.70463 -32.87139 -32.04961 -31.90957 -29.54727 -28.35881 -25.60326 -24.33678 -23.82059 -21.63423 -20.39643 -19.76145 -19.15104 -18.83980 -18.33244 -18.01833 -17.87651 -16.81547 -16.40638 -16.18183 -15.70598 -15.51055 -15.26131 -15.10177 -14.93259 -14.47811 -14.31086 -14.12238 -13.99473 -13.37999 -13.31471 -13.10770 -13.06932 -12.80657 -12.73988 -12.64892 -12.47147 -12.28289 -12.00215 -11.76341 -11.62522 -11.42205 -10.97344 -10.93870 -10.58624 -10.05057 -9.99526 -9.46183 -8.23184 -5.84220 -0.29207 -0.03138 0.33896 1.45462 1.52092 1.55910 1.64327 1.98741 2.03594 2.35684 2.46289 2.54220 2.85252 2.98901 3.23726 3.60252 3.74160 3.90988 3.92340 3.96114 4.29826 4.40532 4.50913 4.54301 4.58446 4.63275 4.85409 4.96553 5.02571 5.05910 5.15399 5.26910 5.31054 5.34977 5.44599 5.60140 5.92100 6.35587 6.40807 6.83385 7.05791 7.19660 7.23973 8.66394 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.004723 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.742590 B = 5927.322620 C = 6349.269725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.133 4.133 3 C 0.239 3.761 4 N -0.817 5.817 5 C -0.284 4.284 6 H 0.116 0.884 7 C -0.004 4.004 8 N -0.856 5.856 9 Si 0.991 3.009 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.262 1.262 13 S 2.576 3.424 14 O -1.001 7.001 15 O -1.013 7.013 16 C -0.692 4.692 17 C -0.021 4.021 18 C -0.159 4.159 19 C 0.178 3.822 20 N -0.660 5.660 21 C 0.500 3.500 22 C -0.156 4.156 23 O -0.576 6.576 24 C -0.154 4.154 25 C -0.022 4.022 26 H 0.218 0.782 27 H 0.122 0.878 28 H 0.081 0.919 29 H 0.275 0.725 30 H 0.140 0.860 31 H 0.170 0.830 32 H 0.433 0.567 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.134 0.866 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.285 12.177 -1.189 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.136 4.136 3 C 0.114 3.886 4 N -0.641 5.641 5 C -0.427 4.427 6 H 0.134 0.866 7 C -0.211 4.211 8 N -0.496 5.496 9 Si 0.814 3.186 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.186 1.186 13 S 2.676 3.324 14 O -0.991 6.991 15 O -1.003 7.003 16 C -0.776 4.776 17 C -0.041 4.041 18 C -0.179 4.179 19 C 0.082 3.918 20 N -0.308 5.308 21 C 0.291 3.709 22 C -0.215 4.215 23 O -0.455 6.455 24 C -0.175 4.175 25 C -0.042 4.042 26 H 0.235 0.765 27 H 0.139 0.861 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.158 0.842 31 H 0.187 0.813 32 H 0.274 0.726 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.152 0.848 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.636 11.773 -0.298 15.217 hybrid contribution -0.760 -0.042 -0.843 1.136 sum -10.396 11.731 -1.141 15.716 Atomic orbital electron populations 1.24830 0.96060 1.02204 1.05379 1.23646 0.95035 0.98722 0.96160 1.18522 0.84064 0.93295 0.92768 1.54514 1.74198 1.19378 1.15970 1.20130 1.31962 1.05673 0.84900 0.86610 1.26231 0.94997 0.96882 1.03029 1.70228 1.27488 1.13618 1.38255 0.84944 0.77930 0.78833 0.76886 1.19403 1.20681 1.18580 1.08567 0.77729 0.73313 0.72744 1.93335 1.62854 1.76734 1.66210 1.93336 1.86310 1.85673 1.34961 1.31829 1.26036 1.17237 1.02515 1.20885 0.96441 0.91447 0.95311 1.21283 0.94874 1.03217 0.98550 1.17986 0.87271 0.93469 0.93074 1.43732 1.06447 1.21514 1.59064 1.22160 0.86615 0.85737 0.76393 1.21901 0.91383 1.01636 1.06571 1.90766 1.86879 1.25646 1.42160 1.21288 0.97256 1.00133 0.98807 1.20716 0.92143 0.95089 0.96257 0.76501 0.86088 0.90084 0.91459 0.84217 0.81292 0.72588 0.86677 0.87593 0.87227 0.84817 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.87 19.25 74.32 1.43 -10.44 16 2 C -0.13 -6.34 11.34 31.12 0.35 -5.99 16 3 C 0.24 11.36 5.44 84.57 0.46 11.82 16 4 N -0.82 -40.33 2.88 -352.52 -1.02 -41.34 16 5 C -0.28 -14.21 9.56 84.03 0.80 -13.41 16 6 H 0.12 5.72 7.12 -2.91 -0.02 5.70 16 7 C 0.00 -0.19 5.18 84.86 0.44 0.24 16 8 N -0.86 -41.99 8.46 21.65 0.18 -41.81 16 9 Si 0.99 38.27 29.57 68.60 2.03 40.30 16 10 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 11 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 12 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 13 S 2.58 123.91 5.65 -56.49 -0.32 123.59 16 14 O -1.00 -51.01 16.05 -128.00 -2.05 -53.07 16 15 O -1.01 -51.18 15.85 -128.00 -2.03 -53.21 16 16 C -0.69 -29.95 5.97 22.29 0.13 -29.82 16 17 C -0.02 -0.79 9.51 22.25 0.21 -0.58 16 18 C -0.16 -4.71 9.97 22.39 0.22 -4.49 16 19 C 0.18 5.37 6.28 38.15 0.24 5.61 16 20 N -0.66 -13.18 5.33 -303.50 -1.62 -14.80 16 21 C 0.50 10.90 7.78 87.66 0.68 11.58 16 22 C -0.16 -1.43 10.39 71.24 0.74 -0.69 16 23 O -0.58 -19.31 14.61 -3.04 -0.04 -19.35 16 24 C -0.15 -5.66 8.69 22.39 0.19 -5.46 16 25 C -0.02 -0.92 9.51 22.25 0.21 -0.71 16 26 H 0.22 8.26 7.80 -4.41 -0.03 8.23 16 27 H 0.12 5.86 6.17 -2.39 -0.01 5.85 16 28 H 0.08 3.64 6.96 -2.39 -0.02 3.63 16 29 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 30 H 0.14 5.09 7.62 -2.91 -0.02 5.07 16 31 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.43 4.37 8.67 -92.71 -0.80 3.56 16 33 H 0.11 0.21 7.92 -2.39 -0.02 0.19 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.13 4.90 6.31 -2.91 -0.02 4.88 16 37 H 0.12 5.15 7.61 -2.91 -0.02 5.13 16 Total: -1.00 -72.78 337.43 1.57 -71.21 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.32 Total: 30.80 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 6.12 Total: -42.32 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -2.45 Total: -97.95 kcal Atomic # 8 Polarization: -121.50 SS G_CDS: -4.13 Total: -125.63 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Atomic # 16 Polarization: 123.91 SS G_CDS: -0.32 Total: 123.59 kcal Total: -72.78 1.57 -71.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382931880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.814 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds