Wall clock time and date at job start Fri Apr 10 2020 18:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46853 * 179.19563 * 3 2 1 5 5 C 1.34778 * 120.00199 * 180.02562 * 4 3 2 6 6 O 1.21558 * 119.99733 * 359.97438 * 5 4 3 7 7 C 1.47844 * 120.00104 * 179.97438 * 5 4 3 8 8 C 1.39590 * 120.14501 * 359.97438 * 7 5 4 9 9 C 1.37934 * 119.85294 * 180.23042 * 8 7 5 10 10 C 1.38374 * 120.14667 * 359.51544 * 9 8 7 11 11 C 1.50700 * 119.85915 * 180.23313 * 10 9 8 12 12 C 1.38343 * 120.29224 * 0.46718 * 10 9 8 13 13 S 1.76195 * 119.92976 * 179.76599 * 12 10 9 14 14 O 1.42105 * 106.40127 * 178.36104 * 13 12 10 15 15 O 1.42096 * 106.40504 * 311.28048 * 13 12 10 16 16 N 1.65605 * 107.21657 * 64.82374 * 13 12 10 17 17 C 1.36935 * 120.00245 * 64.52709 * 16 13 12 18 18 H 1.08005 * 119.99815 * 5.03782 * 17 16 13 19 19 C 1.38809 * 119.99907 * 185.04500 * 17 16 13 20 20 N 1.31620 * 120.00248 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99777 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47196 * 59.99697 * 21 19 17 23 23 H 1.48502 * 109.47033 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47063 * 299.99692 * 21 19 17 25 25 C 1.37978 * 120.13985 * 359.78888 * 12 10 9 26 26 H 4.40637 * 5.51383 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.47123 * 59.19903 * 3 2 1 28 28 H 1.09003 * 109.47515 * 299.19151 * 3 2 1 29 29 H 0.96997 * 120.00021 * 359.97438 * 4 3 2 30 30 H 1.08005 * 120.07374 * 359.95704 * 8 7 5 31 31 H 1.08004 * 119.92488 * 179.74787 * 9 8 7 32 32 H 1.09005 * 109.46991 * 264.49491 * 11 10 9 33 33 H 1.09002 * 109.46910 * 24.48869 * 11 10 9 34 34 H 1.08998 * 109.47369 * 144.49641 * 11 10 9 35 35 H 0.97002 * 119.99468 * 244.52465 * 16 13 12 36 36 H 0.96998 * 119.99639 * 179.97438 * 20 19 17 37 37 H 1.08006 * 120.07346 * 180.02562 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3820 -0.0194 5 6 4.4587 1.6290 -0.0234 6 8 5.2490 0.7055 -0.0104 7 6 4.9508 3.0230 -0.0435 8 6 4.0458 4.0857 -0.0590 9 6 4.5115 5.3838 -0.0825 10 6 5.8725 5.6340 -0.0807 11 6 6.3742 7.0549 -0.1013 12 6 6.7747 4.5854 -0.0651 13 16 8.5056 4.9148 -0.0692 14 8 9.1545 3.6519 -0.0115 15 8 8.7321 5.8583 -1.1073 16 7 8.8607 5.6883 1.3514 17 6 8.6978 5.0371 2.5449 18 1 8.4163 3.9945 2.5572 19 6 8.8945 5.7170 3.7390 20 7 9.2381 6.9875 3.7241 21 14 8.6717 4.8287 5.3672 22 1 9.6202 3.6886 5.4430 23 1 8.9387 5.7694 6.4848 24 1 7.2795 4.3219 5.4681 25 6 6.3220 3.2821 -0.0467 26 1 -1.0501 -0.0004 0.0002 27 1 3.0096 -0.5254 -0.8827 28 1 3.0097 -0.5004 0.8971 29 1 2.5030 2.1189 -0.0301 30 1 2.9833 3.8918 -0.0570 31 1 3.8124 6.2069 -0.0987 32 1 6.5924 7.3483 -1.1281 33 1 5.6114 7.7155 0.3110 34 1 7.2814 7.1286 0.4983 35 1 9.1841 6.6027 1.3380 36 1 9.3751 7.4626 4.5586 37 1 7.0274 2.4643 -0.0341 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490634890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:22 Heat of formation + Delta-G solvation = -26.380764 kcal Electronic energy + Delta-G solvation = -24436.113129 eV Core-core repulsion = 20693.254172 eV Total energy + Delta-G solvation = -3742.858956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.19440 -38.43474 -36.13139 -35.68040 -34.77537 -34.70864 -33.20375 -32.40639 -31.02961 -30.93301 -28.22213 -26.39318 -24.58626 -22.90503 -22.38614 -20.59625 -19.43336 -18.39741 -18.20338 -17.61582 -16.56603 -16.37103 -15.66044 -15.59198 -15.28718 -15.13755 -14.59698 -14.15335 -14.11820 -13.88778 -13.63958 -13.56108 -13.42675 -13.29576 -12.18137 -11.98115 -11.81235 -11.76521 -11.35234 -11.30454 -11.17230 -11.10525 -10.98260 -10.85358 -10.83510 -10.62707 -10.39503 -10.10972 -9.97321 -9.76305 -9.33193 -9.06739 -8.56793 -8.34832 -6.57058 -3.97400 0.86467 1.31053 1.57340 2.06232 2.38971 2.81883 3.17432 3.19313 3.23868 3.28810 3.81303 3.88768 4.03017 4.42633 4.62529 4.72659 4.80761 4.98887 5.05185 5.15275 5.23219 5.29212 5.38232 5.47250 5.62913 5.79382 5.87547 5.99088 6.03232 6.10634 6.29579 6.33334 6.43695 6.60156 7.00311 7.00936 7.11427 7.29600 7.40046 8.09212 8.58788 8.69680 9.14948 10.57865 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.004082 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.589849 B = 6857.776917 C = 7677.195985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.206 4.206 3 C 0.230 3.770 4 N -0.731 5.731 5 C 0.567 3.433 6 O -0.530 6.530 7 C -0.176 4.176 8 C -0.048 4.048 9 C -0.155 4.155 10 C 0.051 3.949 11 C -0.147 4.147 12 C -0.667 4.667 13 S 2.600 3.400 14 O -0.971 6.971 15 O -0.999 6.999 16 N -0.943 5.943 17 C -0.267 4.267 18 H 0.105 0.895 19 C 0.034 3.966 20 N -0.872 5.872 21 Si 0.922 3.078 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.272 1.272 25 C 0.039 3.961 26 H 0.222 0.778 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.402 0.598 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.412 0.588 36 H 0.276 0.724 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.857 -4.048 -4.566 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.207 4.207 3 C 0.108 3.892 4 N -0.385 5.385 5 C 0.356 3.644 6 O -0.407 6.407 7 C -0.180 4.180 8 C -0.067 4.067 9 C -0.174 4.174 10 C 0.049 3.951 11 C -0.203 4.203 12 C -0.746 4.746 13 S 2.691 3.309 14 O -0.961 6.961 15 O -0.988 6.988 16 N -0.695 5.695 17 C -0.409 4.409 18 H 0.123 0.877 19 C -0.175 4.175 20 N -0.513 5.513 21 Si 0.748 3.252 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.197 1.197 25 C 0.019 3.981 26 H 0.239 0.761 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.238 0.762 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.248 0.752 36 H 0.086 0.914 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.789 -5.034 -5.298 16.496 hybrid contribution -1.568 0.378 1.199 2.010 sum -16.357 -4.656 -4.098 17.494 Atomic orbital electron populations 1.25026 0.95925 0.97281 1.00952 1.22964 0.94277 1.02699 1.00745 1.18083 0.83002 0.84192 1.03949 1.45866 1.07278 1.08127 1.77238 1.18298 0.81500 0.89032 0.75589 1.90802 1.55040 1.45665 1.49144 1.19798 0.94940 0.91941 1.11278 1.21294 0.98399 0.92640 0.94337 1.21037 0.95291 0.96503 1.04552 1.19751 0.92837 0.95064 0.87431 1.21299 1.03146 0.91569 1.04309 1.32065 1.30719 0.98229 1.13561 1.07354 0.75309 0.73916 0.74325 1.93467 1.72684 1.42812 1.87136 1.93423 1.85827 1.62165 1.57383 1.51827 1.69659 1.27629 1.20356 1.19373 1.43971 0.94738 0.82801 0.87683 1.25297 0.97018 0.95543 0.99652 1.69678 1.43848 1.08724 1.29035 0.86045 0.79327 0.79197 0.80606 1.19341 1.20640 1.19682 1.21064 0.94438 0.95987 0.86608 0.76113 0.88842 0.88778 0.76216 0.85920 0.85143 0.88795 0.90626 0.89628 0.75207 0.91353 0.83146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 19.25 29.55 0.57 -0.68 16 2 C -0.21 -1.84 13.46 -37.12 -0.50 -2.34 16 3 C 0.23 2.31 6.15 -6.83 -0.04 2.26 16 4 N -0.73 -8.28 5.49 -64.12 -0.35 -8.63 16 5 C 0.57 8.78 7.77 -12.33 -0.10 8.68 16 6 O -0.53 -9.97 16.35 5.31 0.09 -9.88 16 7 C -0.18 -2.85 5.87 -104.97 -0.62 -3.47 16 8 C -0.05 -0.63 9.54 -39.19 -0.37 -1.01 16 9 C -0.16 -2.18 9.66 -39.64 -0.38 -2.56 16 10 C 0.05 0.87 5.88 -104.53 -0.61 0.26 16 11 C -0.15 -2.36 8.59 36.01 0.31 -2.05 16 12 C -0.67 -13.18 5.81 -39.64 -0.23 -13.41 16 13 S 2.60 57.76 4.90 -107.50 -0.53 57.24 16 14 O -0.97 -24.12 16.65 -57.17 -0.95 -25.07 16 15 O -1.00 -22.86 16.46 -57.17 -0.94 -23.80 16 16 N -0.94 -21.94 4.54 31.50 0.14 -21.80 16 17 C -0.27 -6.59 9.64 -15.06 -0.15 -6.74 16 18 H 0.11 2.55 7.80 -52.48 -0.41 2.14 16 19 C 0.03 0.82 5.50 -17.43 -0.10 0.73 16 20 N -0.87 -21.99 13.06 55.49 0.72 -21.26 16 21 Si 0.92 19.33 29.55 -169.99 -5.02 14.31 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C 0.04 0.75 9.09 -39.19 -0.36 0.39 16 26 H 0.22 0.78 7.80 -54.08 -0.42 0.35 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.40 3.58 6.49 -40.82 -0.26 3.32 16 30 H 0.12 1.10 6.41 -52.48 -0.34 0.76 16 31 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.09 1.44 7.99 -51.93 -0.42 1.02 16 33 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 34 H 0.09 1.55 5.41 -51.93 -0.28 1.27 16 35 H 0.41 9.52 7.64 -34.47 -0.26 9.26 16 36 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 37 H 0.15 3.06 6.92 -52.48 -0.36 2.70 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -32.04 341.71 -7.84 -39.88 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -3.58 Total: 13.79 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -2.57 Total: -19.93 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.52 Total: -51.69 kcal Atomic # 8 Polarization: -56.94 SS G_CDS: -1.81 Total: -58.75 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: 57.76 SS G_CDS: -0.53 Total: 57.24 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.04 -7.84 -39.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490634890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.501 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds