Wall clock time and date at job start Fri Apr 10 2020 18:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46836 * 70.40802 * 3 2 1 5 5 C 1.36942 * 119.99888 * 271.82053 * 4 3 2 6 6 H 1.07999 * 119.99876 * 186.80847 * 5 4 3 7 7 C 1.38812 * 119.99932 * 6.81399 * 5 4 3 8 8 N 1.31620 * 119.99999 * 22.95113 * 7 5 4 9 9 Si 1.86803 * 119.99895 * 202.94571 * 7 5 4 10 10 H 1.48493 * 109.47148 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47045 * 120.00308 * 9 7 5 12 12 H 1.48500 * 109.47122 * 239.99855 * 9 7 5 13 13 S 1.65603 * 120.00217 * 91.83043 * 4 3 2 14 14 O 1.42096 * 106.40136 * 156.45434 * 13 4 3 15 15 O 1.42098 * 106.39737 * 23.53376 * 13 4 3 16 16 C 1.76204 * 107.21431 * 269.99758 * 13 4 3 17 17 C 1.38385 * 119.92292 * 270.02055 * 16 13 4 18 18 C 1.38340 * 120.29031 * 179.97438 * 17 16 13 19 19 C 1.37979 * 120.14101 * 359.78364 * 18 17 16 20 20 C 1.50706 * 120.07403 * 180.26086 * 19 18 17 21 21 C 1.39554 * 119.85637 * 0.46898 * 19 18 17 22 22 C 1.47845 * 120.14654 * 179.79105 * 21 19 18 23 23 N 1.34780 * 120.00003 * 173.84889 * 22 21 19 24 24 O 1.21548 * 119.99907 * 353.85068 * 22 21 19 25 25 C 1.37934 * 119.92874 * 89.99743 * 16 13 4 26 26 H 4.40639 * 5.51397 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.46999 * 310.40548 * 3 2 1 28 28 H 1.08991 * 109.46815 * 190.40934 * 3 2 1 29 29 H 0.97002 * 119.99785 * 180.02562 * 8 7 5 30 30 H 1.08003 * 119.85580 * 359.97438 * 17 16 13 31 31 H 1.07993 * 119.92953 * 180.02562 * 18 17 16 32 32 H 1.08996 * 109.46786 * 263.32484 * 20 19 18 33 33 H 1.09006 * 109.46749 * 23.31968 * 20 19 18 34 34 H 1.08992 * 109.47289 * 143.31920 * 20 19 18 35 35 H 0.96999 * 120.00242 * 359.97438 * 23 22 21 36 36 H 0.96997 * 119.99701 * 179.97438 * 23 22 21 37 37 H 1.07999 * 120.06902 * 0.04462 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1345 -0.4623 -1.3012 5 6 3.3278 -1.7996 -1.5238 6 1 3.7904 -2.1331 -2.4409 7 6 2.9291 -2.7265 -0.5705 8 7 1.9950 -2.4128 0.3021 9 14 3.7180 -4.4192 -0.5264 10 1 4.7324 -4.5208 -1.6061 11 1 4.3732 -4.6257 0.7902 12 1 2.6751 -5.4569 -0.7284 13 16 3.4532 0.6316 -2.5030 14 8 4.3859 0.0087 -3.3756 15 8 3.7010 1.8739 -1.8593 16 6 1.9676 0.8380 -3.4277 17 6 1.7139 0.0234 -4.5173 18 6 0.5497 0.1784 -5.2484 19 6 -0.3686 1.1446 -4.8921 20 6 -1.6391 1.3083 -5.6860 21 6 -0.1165 1.9728 -3.7976 22 6 -1.0939 3.0132 -3.4129 23 7 -0.9089 3.7278 -2.2853 24 8 -2.0645 3.2241 -4.1137 25 6 1.0599 1.8106 -3.0637 26 1 -1.0499 -0.0002 -0.0001 27 1 3.0097 -0.6653 0.7826 28 1 3.0089 1.0115 0.1857 29 1 1.7166 -3.0605 0.9685 30 1 2.4280 -0.7366 -4.7982 31 1 0.3575 -0.4607 -6.0974 32 1 -1.5108 2.1072 -6.4163 33 1 -1.8668 0.3762 -6.2034 34 1 -2.4585 1.5596 -5.0127 35 1 -0.1346 3.5593 -1.7258 36 1 -1.5500 4.4107 -2.0332 37 1 1.2593 2.4458 -2.2133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490872708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:24 Heat of formation + Delta-G solvation = -31.674902 kcal Electronic energy + Delta-G solvation = -25555.860740 eV Core-core repulsion = 21812.772213 eV Total energy + Delta-G solvation = -3743.088527 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35065 -39.20794 -38.08693 -37.83045 -36.42568 -35.15292 -33.79009 -33.63377 -32.85830 -32.00327 -28.34746 -28.26296 -25.61885 -25.07966 -23.01390 -21.96917 -20.34787 -19.81808 -19.29533 -18.50100 -18.11915 -17.98023 -17.33483 -16.60761 -16.49863 -16.31167 -16.05393 -15.77676 -15.35460 -15.12993 -14.90551 -14.58450 -14.37743 -14.18283 -13.51467 -13.24074 -13.16223 -13.06688 -13.04806 -12.86269 -12.70331 -12.64995 -12.58339 -12.26973 -11.98061 -11.69152 -11.36061 -10.96482 -10.87012 -10.74112 -10.56876 -10.10444 -10.05215 -9.98571 -8.33855 -5.80453 -0.35822 -0.16609 0.06198 1.51109 1.57060 1.66132 1.69802 2.06269 2.36127 2.46282 2.46909 2.58403 2.83153 2.94336 3.24871 3.55524 3.69363 3.81592 3.85798 3.96132 4.17771 4.34927 4.50290 4.58239 4.64177 4.77886 4.81225 4.95359 5.01722 5.14803 5.22679 5.28953 5.41158 5.45077 5.56345 5.78529 5.84745 6.26746 6.37524 6.78394 7.18869 7.19133 7.23284 8.58404 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.005121 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.682585 B = 5466.536560 C = 5608.047859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.143 4.143 3 C 0.232 3.768 4 N -0.805 5.805 5 C -0.274 4.274 6 H 0.116 0.884 7 C 0.002 3.998 8 N -0.838 5.838 9 Si 0.986 3.014 10 H -0.263 1.263 11 H -0.270 1.270 12 H -0.279 1.279 13 S 2.555 3.445 14 O -1.005 7.005 15 O -1.009 7.009 16 C -0.693 4.693 17 C -0.009 4.009 18 C -0.151 4.151 19 C 0.001 3.999 20 C -0.115 4.115 21 C -0.182 4.182 22 C 0.568 3.432 23 N -0.833 5.833 24 O -0.564 6.564 25 C 0.009 3.991 26 H 0.222 0.778 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.278 0.722 30 H 0.138 0.862 31 H 0.163 0.837 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.416 0.584 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 3.668 -2.143 6.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.145 4.145 3 C 0.107 3.893 4 N -0.628 5.628 5 C -0.420 4.420 6 H 0.133 0.867 7 C -0.208 4.208 8 N -0.477 5.477 9 Si 0.809 3.191 10 H -0.186 1.186 11 H -0.196 1.196 12 H -0.205 1.205 13 S 2.655 3.345 14 O -0.996 6.996 15 O -0.999 6.999 16 C -0.773 4.773 17 C -0.028 4.028 18 C -0.170 4.170 19 C 0.000 4.000 20 C -0.171 4.171 21 C -0.186 4.186 22 C 0.355 3.645 23 N -0.397 5.397 24 O -0.446 6.446 25 C -0.011 4.011 26 H 0.238 0.762 27 H 0.132 0.868 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.156 0.844 31 H 0.181 0.819 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.242 0.758 36 H 0.249 0.751 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.001 4.306 -2.819 7.176 hybrid contribution -0.547 -0.708 0.336 0.956 sum -5.549 3.598 -2.484 7.064 Atomic orbital electron populations 1.24856 0.95992 1.05664 1.00640 1.23574 0.94924 0.96102 0.99904 1.18566 0.84369 0.99518 0.86847 1.55063 1.72599 1.17249 1.17873 1.20229 1.32668 0.81602 1.07478 0.86681 1.26177 0.95363 1.02683 0.96579 1.70279 1.23449 1.36664 1.17316 0.84964 0.78408 0.76694 0.79029 1.18641 1.19553 1.20496 1.10147 0.77987 0.73565 0.72822 1.93329 1.62833 1.76491 1.66901 1.93320 1.86525 1.44884 1.75138 1.32083 1.26516 1.05779 1.12967 1.21262 0.96344 0.94435 0.90798 1.21466 0.93707 0.99861 1.01938 1.20531 0.96111 0.91267 0.92095 1.21099 0.93479 1.02911 0.99645 1.19979 0.96854 1.01289 1.00504 1.18131 0.84331 0.80872 0.81154 1.43635 1.30703 1.40349 1.25041 1.90717 1.31741 1.68752 1.53357 1.20993 0.90851 0.93250 0.96024 0.76173 0.86820 0.89126 0.91134 0.84401 0.81945 0.90077 0.89859 0.89858 0.75809 0.75072 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.39 19.25 74.32 1.43 -7.96 16 2 C -0.14 -5.82 11.44 31.13 0.36 -5.46 16 3 C 0.23 9.70 5.43 84.58 0.46 10.16 16 4 N -0.81 -36.11 2.88 -352.52 -1.01 -37.12 16 5 C -0.27 -12.75 9.50 84.03 0.80 -11.95 16 6 H 0.12 5.38 7.20 -2.91 -0.02 5.36 16 7 C 0.00 0.09 4.98 84.86 0.42 0.51 16 8 N -0.84 -37.63 8.92 21.65 0.19 -37.44 16 9 Si 0.99 35.82 29.61 68.60 2.03 37.85 16 10 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 11 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 12 H -0.28 -10.08 7.11 99.48 0.71 -9.37 16 13 S 2.55 112.89 5.65 -56.49 -0.32 112.58 16 14 O -1.01 -49.01 16.05 -128.00 -2.05 -51.06 16 15 O -1.01 -45.77 15.86 -128.00 -2.03 -47.80 16 16 C -0.69 -27.37 5.97 22.23 0.13 -27.24 16 17 C -0.01 -0.33 9.52 22.33 0.21 -0.12 16 18 C -0.15 -4.63 9.66 22.23 0.21 -4.41 16 19 C 0.00 0.04 5.91 -19.61 -0.12 -0.08 16 20 C -0.12 -2.99 8.72 71.24 0.62 -2.37 16 21 C -0.18 -6.01 5.87 -20.09 -0.12 -6.13 16 22 C 0.57 17.00 7.98 86.79 0.69 17.69 16 23 N -0.83 -18.44 8.82 -175.60 -1.55 -19.98 16 24 O -0.56 -18.81 14.19 -3.87 -0.05 -18.87 16 25 C 0.01 0.31 9.00 22.53 0.20 0.51 16 26 H 0.22 6.67 7.80 -4.42 -0.03 6.63 16 27 H 0.11 4.90 6.24 -2.38 -0.01 4.88 16 28 H 0.09 3.48 6.98 -2.39 -0.02 3.46 16 29 H 0.28 11.80 8.31 -92.71 -0.77 11.03 16 30 H 0.14 4.89 7.61 -2.91 -0.02 4.87 16 31 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 1.72 8.04 -2.38 -0.02 1.70 16 34 H 0.08 2.41 5.88 -2.39 -0.01 2.39 16 35 H 0.41 8.31 6.90 -92.71 -0.64 7.67 16 36 H 0.42 7.09 8.93 -92.71 -0.83 6.26 16 37 H 0.14 4.51 6.00 -2.91 -0.02 4.50 16 Total: -1.00 -61.45 332.60 0.19 -61.26 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.32 Total: 37.43 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 5.31 Total: -36.83 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -2.37 Total: -94.55 kcal Atomic # 8 Polarization: -113.60 SS G_CDS: -4.14 Total: -117.74 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: 112.89 SS G_CDS: -0.32 Total: 112.58 kcal Total: -61.45 0.19 -61.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490872708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.583 kcal (2) G-P(sol) polarization free energy of solvation -61.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds