Wall clock time and date at job start Fri Apr 10 2020 18:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46783 * 164.10726 * 3 2 1 5 5 C 1.36937 * 119.99729 * 273.26068 * 4 3 2 6 6 H 1.07997 * 119.99754 * 186.69868 * 5 4 3 7 7 C 1.38816 * 120.00307 * 6.69348 * 5 4 3 8 8 N 1.31624 * 119.99701 * 25.19444 * 7 5 4 9 9 Si 1.86793 * 120.00185 * 205.19593 * 7 5 4 10 10 H 1.48498 * 109.47207 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47367 * 120.00030 * 9 7 5 12 12 H 1.48500 * 109.47074 * 239.99998 * 9 7 5 13 13 S 1.65594 * 119.99925 * 93.26373 * 4 3 2 14 14 O 1.42095 * 106.40224 * 156.46123 * 13 4 3 15 15 O 1.42098 * 106.40452 * 23.53553 * 13 4 3 16 16 C 1.76207 * 107.21685 * 269.99531 * 13 4 3 17 17 C 1.38354 * 119.85830 * 270.25625 * 16 13 4 18 18 C 1.37960 * 120.15021 * 180.25197 * 17 16 13 19 19 C 1.39570 * 119.84637 * 359.49539 * 18 17 16 20 20 C 1.47846 * 120.14156 * 180.27349 * 19 18 17 21 21 O 1.21545 * 120.00160 * 0.02562 * 20 19 18 22 22 N 1.34788 * 119.99971 * 179.97438 * 20 19 18 23 23 C 1.46496 * 119.99693 * 179.97438 * 22 20 19 24 24 C 1.39583 * 119.71866 * 0.24970 * 19 18 17 25 25 C 1.37959 * 119.84603 * 0.02562 * 24 19 18 26 26 H 4.40641 * 5.51436 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47463 * 44.10857 * 3 2 1 28 28 H 1.09004 * 109.47164 * 284.10545 * 3 2 1 29 29 H 0.97001 * 119.99710 * 179.97438 * 8 7 5 30 30 H 1.08008 * 119.92639 * 0.02562 * 17 16 13 31 31 H 1.07994 * 120.07478 * 179.76971 * 18 17 16 32 32 H 0.96995 * 119.99409 * 0.02562 * 22 20 19 33 33 H 1.08998 * 109.47325 * 300.00013 * 23 22 20 34 34 H 1.08995 * 109.47258 * 60.00363 * 23 22 20 35 35 H 1.09004 * 109.46796 * 180.02562 * 23 22 20 36 36 H 1.07993 * 120.07827 * 180.02562 * 24 19 18 37 37 H 1.07996 * 119.92424 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1336 1.3294 -0.3783 5 6 3.2980 1.6477 -1.6999 6 1 3.7582 2.5847 -1.9764 7 6 2.8733 0.7659 -2.6843 8 7 1.9108 -0.0942 -2.4266 9 14 3.6677 0.7998 -4.3746 10 1 4.7171 1.8500 -4.4073 11 1 4.2819 -0.5220 -4.6595 12 1 2.6362 1.0978 -5.4004 13 16 3.4860 2.4462 0.7925 14 8 4.4107 3.3565 0.2133 15 8 3.7571 1.7123 1.9787 16 6 2.0125 3.3622 1.0999 17 6 1.7478 4.5067 0.3690 18 6 0.5984 5.2313 0.6083 19 6 -0.3033 4.8017 1.5830 20 6 -1.5399 5.5699 1.8407 21 8 -1.7733 6.5778 1.2026 22 7 -2.4090 5.1521 2.7824 23 6 -3.6341 5.9137 3.0380 24 6 -0.0329 3.6433 2.3133 25 6 1.1229 2.9311 2.0680 26 1 -1.0503 -0.0004 0.0003 27 1 3.0096 -0.7370 -0.7152 28 1 3.0094 -0.2496 0.9967 29 1 1.6138 -0.7101 -3.1146 30 1 2.4442 4.8356 -0.3882 31 1 0.3948 6.1265 0.0395 32 1 -2.2229 4.3476 3.2912 33 1 -3.3746 6.9255 3.3495 34 1 -4.2323 5.9559 2.1278 35 1 -4.2067 5.4265 3.8273 36 1 -0.7268 3.3053 3.0687 37 1 1.3336 2.0349 2.6326 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490875531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:28 Heat of formation + Delta-G solvation = -3.790556 kcal Electronic energy + Delta-G solvation = -24954.304856 eV Core-core repulsion = 21212.425485 eV Total energy + Delta-G solvation = -3741.879372 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.04068 -37.96181 -36.44522 -35.96035 -34.78246 -34.52887 -32.15571 -31.25363 -31.20471 -30.65380 -27.04202 -26.70523 -23.98368 -23.51555 -22.25794 -20.56293 -18.67050 -18.33768 -18.02880 -17.21015 -16.66901 -16.24267 -16.10694 -15.28649 -14.87585 -14.79499 -14.65252 -14.14233 -13.97648 -13.47483 -13.39043 -13.21294 -13.16504 -12.59239 -12.49066 -12.42408 -12.20641 -11.95537 -11.36530 -11.10879 -10.94722 -10.85444 -10.76761 -10.54558 -10.39041 -10.19154 -9.94234 -9.66512 -9.36692 -9.31662 -9.01303 -8.78810 -8.67752 -8.42357 -6.73452 -4.07043 0.80386 1.58548 1.68349 2.86391 3.00896 3.09202 3.09792 3.17915 3.66797 3.91578 4.01029 4.07702 4.47806 4.57800 4.69251 4.90891 4.99082 5.07044 5.16718 5.29836 5.44582 5.50276 5.57287 5.68043 5.89980 5.97292 6.19245 6.21381 6.29810 6.38209 6.50228 6.62818 6.68720 6.89208 7.04041 7.14213 7.17492 7.33731 8.03654 8.11443 8.42485 8.81016 8.85884 10.17287 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.004360 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.717290 B = 6420.761878 C = 6679.119604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.113 4.113 3 C 0.232 3.768 4 N -0.789 5.789 5 C -0.235 4.235 6 H 0.126 0.874 7 C 0.028 3.972 8 N -0.810 5.810 9 Si 0.932 3.068 10 H -0.259 1.259 11 H -0.274 1.274 12 H -0.278 1.278 13 S 2.514 3.486 14 O -0.980 6.980 15 O -0.996 6.996 16 C -0.628 4.628 17 C -0.035 4.035 18 C -0.084 4.084 19 C -0.117 4.117 20 C 0.560 3.440 21 O -0.538 6.538 22 N -0.734 5.734 23 C 0.089 3.911 24 C -0.112 4.112 25 C -0.037 4.037 26 H 0.195 0.805 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.278 0.722 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.403 0.597 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 1.490 6.057 9.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.116 4.116 3 C 0.107 3.893 4 N -0.610 5.610 5 C -0.384 4.384 6 H 0.144 0.856 7 C -0.186 4.186 8 N -0.449 5.449 9 Si 0.756 3.244 10 H -0.183 1.183 11 H -0.199 1.199 12 H -0.204 1.204 13 S 2.613 3.387 14 O -0.970 6.970 15 O -0.985 6.985 16 C -0.704 4.704 17 C -0.054 4.054 18 C -0.103 4.103 19 C -0.120 4.120 20 C 0.348 3.652 21 O -0.416 6.416 22 N -0.387 5.387 23 C -0.055 4.055 24 C -0.132 4.132 25 C -0.056 4.056 26 H 0.212 0.788 27 H 0.135 0.865 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.238 0.762 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.396 2.374 6.271 9.267 hybrid contribution -1.184 -0.137 -0.625 1.346 sum -7.580 2.237 5.647 9.713 Atomic orbital electron populations 1.24188 0.95267 1.01761 1.07042 1.23361 0.94524 0.98849 0.94875 1.18550 0.83946 0.86472 1.00337 1.55688 1.70984 1.16999 1.17297 1.20323 1.30028 1.07538 0.80501 0.85617 1.25686 0.95147 0.97164 1.00600 1.70242 1.20870 1.18823 1.34942 0.85752 0.79520 0.79249 0.79850 1.18254 1.19898 1.20363 1.12571 0.78792 0.73049 0.74311 1.93357 1.62159 1.64332 1.77133 1.93340 1.85761 1.70992 1.48451 1.32867 1.26544 1.08778 1.02249 1.20891 0.95691 0.92241 0.96616 1.21321 0.93207 0.99728 0.96084 1.19909 0.95350 0.96878 0.99865 1.18453 0.83216 0.84308 0.79185 1.90746 1.76497 1.25620 1.48696 1.45729 1.22731 1.30228 1.40012 1.21533 0.85913 0.96689 1.01389 1.21244 0.97763 0.94835 0.99317 1.20754 0.92067 0.98158 0.94635 0.78753 0.86541 0.89867 0.91101 0.84256 0.84831 0.76221 0.92193 0.92135 0.90608 0.86044 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.16 19.25 29.55 0.57 -4.59 16 2 C -0.11 -2.39 11.25 -37.13 -0.42 -2.81 16 3 C 0.23 4.88 5.45 -6.83 -0.04 4.84 16 4 N -0.79 -17.70 2.88 -62.77 -0.18 -17.88 16 5 C -0.23 -5.41 9.48 -15.06 -0.14 -5.55 16 6 H 0.13 2.88 7.22 -52.49 -0.38 2.50 16 7 C 0.03 0.61 4.92 -17.43 -0.09 0.53 16 8 N -0.81 -18.24 8.96 55.49 0.50 -17.74 16 9 Si 0.93 17.50 29.62 -169.99 -5.04 12.47 16 10 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 11 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 12 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 13 S 2.51 56.19 5.65 -107.50 -0.61 55.59 16 14 O -0.98 -23.93 16.05 -57.17 -0.92 -24.84 16 15 O -1.00 -23.17 15.83 -57.17 -0.91 -24.07 16 16 C -0.63 -12.76 5.98 -39.49 -0.24 -13.00 16 17 C -0.04 -0.69 9.50 -39.64 -0.38 -1.06 16 18 C -0.08 -1.51 9.60 -39.19 -0.38 -1.88 16 19 C -0.12 -1.94 5.87 -104.97 -0.62 -2.56 16 20 C 0.56 8.77 7.77 -12.32 -0.10 8.67 16 21 O -0.54 -10.03 16.35 5.33 0.09 -9.94 16 22 N -0.73 -8.32 5.66 -68.05 -0.39 -8.71 16 23 C 0.09 0.80 10.70 59.84 0.64 1.44 16 24 C -0.11 -1.73 9.54 -39.18 -0.37 -2.10 16 25 C -0.04 -0.67 9.50 -39.64 -0.38 -1.05 16 26 H 0.20 3.17 7.80 -54.08 -0.42 2.75 16 27 H 0.12 2.46 6.41 -51.93 -0.33 2.13 16 28 H 0.08 1.62 6.95 -51.93 -0.36 1.26 16 29 H 0.28 5.91 8.31 -40.82 -0.34 5.57 16 30 H 0.14 2.61 7.61 -52.48 -0.40 2.21 16 31 H 0.13 2.24 7.65 -52.49 -0.40 1.84 16 32 H 0.40 3.51 6.86 -40.82 -0.28 3.23 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.12 1.36 6.41 -52.49 -0.34 1.02 16 37 H 0.13 2.31 7.60 -52.49 -0.40 1.91 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -30.48 338.41 -7.99 -38.47 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -3.71 Total: 10.69 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -1.93 Total: -19.13 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.07 Total: -44.33 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -1.74 Total: -58.86 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.04 Total: 12.47 kcal Atomic # 16 Polarization: 56.19 SS G_CDS: -0.61 Total: 55.59 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.48 -7.99 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490875531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.678 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds