Wall clock time and date at job start Fri Apr 10 2020 18:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46783 * 164.10726 * 3 2 1 5 5 C 1.36937 * 119.99729 * 273.26068 * 4 3 2 6 6 H 1.07997 * 119.99754 * 186.69868 * 5 4 3 7 7 C 1.38816 * 120.00307 * 6.69348 * 5 4 3 8 8 N 1.31624 * 119.99701 * 25.19444 * 7 5 4 9 9 Si 1.86793 * 120.00185 * 205.19593 * 7 5 4 10 10 H 1.48498 * 109.47207 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47367 * 120.00030 * 9 7 5 12 12 H 1.48500 * 109.47074 * 239.99998 * 9 7 5 13 13 S 1.65594 * 119.99925 * 93.26373 * 4 3 2 14 14 O 1.42095 * 106.40224 * 156.46123 * 13 4 3 15 15 O 1.42098 * 106.40452 * 23.53553 * 13 4 3 16 16 C 1.76207 * 107.21685 * 269.99531 * 13 4 3 17 17 C 1.38354 * 119.85830 * 270.25625 * 16 13 4 18 18 C 1.37960 * 120.15021 * 180.25197 * 17 16 13 19 19 C 1.39570 * 119.84637 * 359.49539 * 18 17 16 20 20 C 1.47846 * 120.14156 * 180.27349 * 19 18 17 21 21 O 1.21545 * 120.00160 * 0.02562 * 20 19 18 22 22 N 1.34788 * 119.99971 * 179.97438 * 20 19 18 23 23 C 1.46496 * 119.99693 * 179.97438 * 22 20 19 24 24 C 1.39583 * 119.71866 * 0.24970 * 19 18 17 25 25 C 1.37959 * 119.84603 * 0.02562 * 24 19 18 26 26 H 4.40641 * 5.51436 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47463 * 44.10857 * 3 2 1 28 28 H 1.09004 * 109.47164 * 284.10545 * 3 2 1 29 29 H 0.97001 * 119.99710 * 179.97438 * 8 7 5 30 30 H 1.08008 * 119.92639 * 0.02562 * 17 16 13 31 31 H 1.07994 * 120.07478 * 179.76971 * 18 17 16 32 32 H 0.96995 * 119.99409 * 0.02562 * 22 20 19 33 33 H 1.08998 * 109.47325 * 300.00013 * 23 22 20 34 34 H 1.08995 * 109.47258 * 60.00363 * 23 22 20 35 35 H 1.09004 * 109.46796 * 180.02562 * 23 22 20 36 36 H 1.07993 * 120.07827 * 180.02562 * 24 19 18 37 37 H 1.07996 * 119.92424 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1336 1.3294 -0.3783 5 6 3.2980 1.6477 -1.6999 6 1 3.7582 2.5847 -1.9764 7 6 2.8733 0.7659 -2.6843 8 7 1.9108 -0.0942 -2.4266 9 14 3.6677 0.7998 -4.3746 10 1 4.7171 1.8500 -4.4073 11 1 4.2819 -0.5220 -4.6595 12 1 2.6362 1.0978 -5.4004 13 16 3.4860 2.4462 0.7925 14 8 4.4107 3.3565 0.2133 15 8 3.7571 1.7123 1.9787 16 6 2.0125 3.3622 1.0999 17 6 1.7478 4.5067 0.3690 18 6 0.5984 5.2313 0.6083 19 6 -0.3033 4.8017 1.5830 20 6 -1.5399 5.5699 1.8407 21 8 -1.7733 6.5778 1.2026 22 7 -2.4090 5.1521 2.7824 23 6 -3.6341 5.9137 3.0380 24 6 -0.0329 3.6433 2.3133 25 6 1.1229 2.9311 2.0680 26 1 -1.0503 -0.0004 0.0003 27 1 3.0096 -0.7370 -0.7152 28 1 3.0094 -0.2496 0.9967 29 1 1.6138 -0.7101 -3.1146 30 1 2.4442 4.8356 -0.3882 31 1 0.3948 6.1265 0.0395 32 1 -2.2229 4.3476 3.2912 33 1 -3.3746 6.9255 3.3495 34 1 -4.2323 5.9559 2.1278 35 1 -4.2067 5.4265 3.8273 36 1 -0.7268 3.3053 3.0687 37 1 1.3336 2.0349 2.6326 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490875531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:27 Heat of formation + Delta-G solvation = -24.683027 kcal Electronic energy + Delta-G solvation = -24955.210822 eV Core-core repulsion = 21212.425485 eV Total energy + Delta-G solvation = -3742.785337 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.28794 -39.30947 -38.10566 -37.82167 -36.41420 -35.85138 -33.78678 -32.87781 -32.57306 -32.05652 -28.34794 -28.00145 -25.66741 -24.82390 -23.64435 -21.76885 -20.36750 -19.80578 -19.45693 -18.81439 -18.31917 -17.86546 -17.33313 -16.52744 -16.38121 -16.23149 -16.04370 -15.64203 -15.33499 -15.10626 -14.94627 -14.52431 -14.31914 -14.13257 -13.92619 -13.59650 -13.56440 -13.14669 -13.09733 -12.74426 -12.69417 -12.59667 -12.28725 -12.24116 -12.00493 -11.76694 -11.43738 -11.17312 -10.93647 -10.60487 -10.43046 -10.14411 -10.08741 -10.06242 -8.38008 -5.81864 -0.61906 -0.12959 0.27979 1.49589 1.53958 1.56586 1.68590 2.06160 2.08514 2.35257 2.49435 2.60932 2.81195 2.91817 3.24547 3.56499 3.58563 3.83769 3.89120 3.98453 4.27155 4.40435 4.44420 4.56444 4.58790 4.59008 4.88234 4.90092 4.98357 5.00924 5.12395 5.19376 5.26563 5.27785 5.43272 5.54063 5.75946 6.33935 6.36073 6.73620 7.02470 7.15726 7.26259 8.53205 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.004360 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.717290 B = 6420.761878 C = 6679.119604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.147 4.147 3 C 0.233 3.767 4 N -0.801 5.801 5 C -0.271 4.271 6 H 0.115 0.885 7 C 0.004 3.996 8 N -0.830 5.830 9 Si 0.987 3.013 10 H -0.263 1.263 11 H -0.267 1.267 12 H -0.278 1.278 13 S 2.539 3.461 14 O -1.007 7.007 15 O -1.008 7.008 16 C -0.651 4.651 17 C -0.050 4.050 18 C -0.093 4.093 19 C -0.114 4.114 20 C 0.558 3.442 21 O -0.574 6.574 22 N -0.714 5.714 23 C 0.083 3.917 24 C -0.094 4.094 25 C -0.046 4.046 26 H 0.226 0.774 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.280 0.720 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.418 0.582 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.118 0.882 36 H 0.173 0.827 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.282 1.239 7.485 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.150 4.150 3 C 0.108 3.892 4 N -0.623 5.623 5 C -0.418 4.418 6 H 0.133 0.867 7 C -0.208 4.208 8 N -0.468 5.468 9 Si 0.809 3.191 10 H -0.187 1.187 11 H -0.192 1.192 12 H -0.203 1.203 13 S 2.640 3.360 14 O -0.997 6.997 15 O -0.998 6.998 16 C -0.731 4.731 17 C -0.069 4.069 18 C -0.113 4.113 19 C -0.117 4.117 20 C 0.345 3.655 21 O -0.455 6.455 22 N -0.366 5.366 23 C -0.060 4.060 24 C -0.113 4.113 25 C -0.065 4.065 26 H 0.243 0.757 27 H 0.128 0.872 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.256 0.744 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.190 0.810 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.777 2.058 7.702 11.858 hybrid contribution -0.587 0.045 -0.863 1.045 sum -9.365 2.104 6.839 11.785 Atomic orbital electron populations 1.24933 0.96087 1.00216 1.05591 1.23515 0.94960 1.00257 0.96226 1.18507 0.84612 0.85643 1.00438 1.55307 1.72427 1.17590 1.16942 1.20294 1.32389 1.08019 0.81103 0.86736 1.26235 0.95151 0.96587 1.02806 1.70301 1.21430 1.19341 1.35713 0.84959 0.78509 0.79140 0.76478 1.18719 1.19225 1.20348 1.10991 0.78525 0.72774 0.73706 1.93322 1.63504 1.65140 1.77772 1.93318 1.86213 1.71484 1.48767 1.32437 1.26306 1.09780 1.04609 1.20903 0.96542 0.92610 0.96890 1.21429 0.93109 0.99875 0.96885 1.20188 0.95451 0.97107 0.98962 1.18331 0.83397 0.83828 0.79932 1.90738 1.77213 1.27153 1.50390 1.45662 1.22328 1.30444 1.38190 1.21786 0.84926 0.96844 1.02481 1.21661 0.97226 0.93249 0.99177 1.20993 0.92620 0.98778 0.94099 0.75695 0.87245 0.89045 0.90915 0.84925 0.84343 0.74376 0.92666 0.92840 0.86354 0.80978 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.30 19.25 74.32 1.43 -7.87 16 2 C -0.15 -6.11 11.25 31.12 0.35 -5.75 16 3 C 0.23 9.93 5.45 84.57 0.46 10.39 16 4 N -0.80 -36.82 2.88 -352.51 -1.02 -37.84 16 5 C -0.27 -12.91 9.48 84.03 0.80 -12.11 16 6 H 0.12 5.53 7.22 -2.91 -0.02 5.51 16 7 C 0.00 0.16 4.92 84.86 0.42 0.58 16 8 N -0.83 -37.59 8.96 21.65 0.19 -37.40 16 9 Si 0.99 36.35 29.62 68.60 2.03 38.39 16 10 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 11 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 12 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 13 S 2.54 115.73 5.65 -56.49 -0.32 115.41 16 14 O -1.01 -50.89 16.05 -128.00 -2.05 -52.94 16 15 O -1.01 -47.12 15.83 -128.00 -2.03 -49.15 16 16 C -0.65 -26.40 5.98 22.33 0.13 -26.27 16 17 C -0.05 -1.98 9.50 22.23 0.21 -1.77 16 18 C -0.09 -3.31 9.60 22.53 0.22 -3.09 16 19 C -0.11 -3.52 5.87 -20.09 -0.12 -3.64 16 20 C 0.56 15.99 7.77 86.78 0.67 16.66 16 21 O -0.57 -20.59 16.35 -3.86 -0.06 -20.66 16 22 N -0.71 -13.26 5.66 -487.48 -2.76 -16.03 16 23 C 0.08 1.17 10.70 127.77 1.37 2.53 16 24 C -0.09 -2.58 9.54 22.53 0.21 -2.36 16 25 C -0.05 -1.57 9.50 22.23 0.21 -1.36 16 26 H 0.23 6.59 7.80 -4.40 -0.03 6.55 16 27 H 0.11 4.75 6.41 -2.39 -0.02 4.74 16 28 H 0.09 3.61 6.95 -2.39 -0.02 3.59 16 29 H 0.28 11.92 8.31 -92.71 -0.77 11.14 16 30 H 0.13 5.24 7.61 -2.91 -0.02 5.21 16 31 H 0.14 4.67 7.65 -2.91 -0.02 4.65 16 32 H 0.42 5.04 6.86 -92.71 -0.64 4.41 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.17 2.85 6.41 -2.91 -0.02 2.83 16 37 H 0.14 4.63 7.60 -2.91 -0.02 4.60 16 Total: -1.00 -66.78 338.41 0.84 -65.94 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.48 Total: 28.33 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 6.37 Total: -34.06 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -3.58 Total: -91.26 kcal Atomic # 8 Polarization: -118.60 SS G_CDS: -4.14 Total: -122.75 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.39 kcal Atomic # 16 Polarization: 115.73 SS G_CDS: -0.32 Total: 115.41 kcal Total: -66.78 0.84 -65.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490875531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.255 kcal (2) G-P(sol) polarization free energy of solvation -66.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds