Wall clock time and date at job start Fri Apr 10 2020 18:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47117 * 284.98383 * 3 2 1 5 5 C 1.37099 * 119.99578 * 264.13773 * 4 3 2 6 6 H 1.08003 * 119.99633 * 197.43544 * 5 4 3 7 7 C 1.38948 * 120.00157 * 17.43871 * 5 4 3 8 8 N 1.31408 * 120.00015 * 21.52481 * 7 5 4 9 9 Si 1.86806 * 119.99920 * 201.52184 * 7 5 4 10 10 H 1.48491 * 109.46931 * 89.99796 * 9 7 5 11 11 H 1.48498 * 109.47061 * 210.00160 * 9 7 5 12 12 H 1.48504 * 109.46934 * 330.00186 * 9 7 5 13 13 C 1.34775 * 120.00116 * 84.14261 * 4 3 2 14 14 O 1.21300 * 119.99845 * 180.02562 * 13 4 3 15 15 C 1.50698 * 119.99950 * 359.97438 * 13 4 3 16 16 N 1.46499 * 109.46944 * 180.02562 * 15 13 4 17 17 C 1.34775 * 120.00139 * 180.02562 * 16 15 13 18 18 O 1.21566 * 119.99769 * 0.02562 * 17 16 15 19 19 C 1.47731 * 120.00189 * 179.97438 * 17 16 15 20 20 C 1.39650 * 120.11075 * 359.97438 * 19 17 16 21 21 C 1.37842 * 119.92898 * 179.97438 * 20 19 17 22 22 C 1.38613 * 120.14581 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.88988 * 180.27633 * 22 21 20 24 24 C 1.38831 * 120.22157 * 359.97438 * 22 21 20 25 25 F 1.35094 * 119.96787 * 179.97438 * 24 22 21 26 26 C 1.38060 * 120.07000 * 359.97438 * 24 22 21 27 27 H 4.40634 * 5.51385 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.47199 * 164.98019 * 3 2 1 29 29 H 1.09002 * 109.46963 * 44.98341 * 3 2 1 30 30 H 0.97002 * 120.00164 * 180.02562 * 8 7 5 31 31 H 1.08990 * 109.47196 * 60.00696 * 15 13 4 32 32 H 1.09003 * 109.47381 * 299.99938 * 15 13 4 33 33 H 0.96999 * 120.00421 * 359.97438 * 16 15 13 34 34 H 1.08005 * 120.03328 * 0.04845 * 20 19 17 35 35 H 1.08003 * 119.93064 * 180.02562 * 21 20 19 36 36 H 1.07997 * 120.07617 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3562 1.3342 5 6 3.4769 0.6283 2.2248 6 1 4.0895 0.3916 3.0822 7 6 3.0357 1.9305 2.0244 8 7 1.9842 2.1593 1.2701 9 14 3.9372 3.3561 2.8272 10 1 5.0052 3.8419 1.9170 11 1 2.9791 4.4578 3.0986 12 1 4.5440 2.9018 4.1042 13 6 3.2474 -1.6523 1.6861 14 8 3.6514 -1.9477 2.7910 15 6 2.8706 -2.7344 0.7073 16 7 3.0810 -4.0462 1.3248 17 6 2.8094 -5.1691 0.6306 18 8 2.3904 -5.0934 -0.5080 19 6 3.0221 -6.4919 1.2531 20 6 3.5048 -6.5815 2.5604 21 6 3.7014 -7.8177 3.1377 22 6 3.4213 -8.9721 2.4233 23 9 3.6106 -10.1809 2.9961 24 6 2.9412 -8.8901 1.1232 25 9 2.6704 -10.0185 0.4315 26 6 2.7400 -7.6566 0.5366 27 1 -1.0499 0.0002 0.0002 28 1 3.0089 0.9933 -0.2663 29 1 3.0097 -0.7261 -0.7265 30 1 1.6764 3.0684 1.1299 31 1 3.4905 -2.6490 -0.1851 32 1 1.8213 -2.6266 0.4326 33 1 3.4163 -4.1066 2.2329 34 1 3.7229 -5.6832 3.1189 35 1 4.0743 -7.8871 4.1489 36 1 2.3668 -7.5928 -0.4749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490962569.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:30 Heat of formation + Delta-G solvation = -76.107671 kcal Electronic energy + Delta-G solvation = -25596.281825 eV Core-core repulsion = 21297.426161 eV Total energy + Delta-G solvation = -4298.855664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.092 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.63821 -49.71248 -41.50339 -40.47114 -39.11463 -37.25082 -35.61102 -34.03989 -33.06800 -32.26946 -31.94984 -29.32413 -28.09781 -26.31803 -24.83014 -24.24964 -21.82951 -21.24760 -19.82496 -19.67482 -18.83987 -18.40098 -18.26814 -17.75778 -17.48594 -17.45708 -16.82342 -16.69705 -16.27886 -16.12019 -15.92407 -15.74874 -15.62639 -15.16537 -15.02634 -14.59528 -14.23257 -14.15545 -13.84739 -13.72641 -13.61446 -13.47738 -13.09924 -12.78166 -12.47884 -12.45816 -12.14869 -11.32610 -11.20174 -11.11736 -10.70413 -10.47584 -10.36322 -10.24934 -9.92964 -9.87960 -8.33398 -5.94668 -0.67661 -0.16396 1.36904 1.46360 1.46986 1.55990 1.74451 1.86902 2.13987 2.32881 2.38120 2.42654 2.58019 3.03328 3.10024 3.16173 3.38178 3.46744 3.76567 3.80422 3.89013 3.95343 4.28122 4.38991 4.51755 4.57581 4.65766 4.72548 4.82187 4.94792 4.95531 5.12521 5.41059 5.48101 5.49901 6.00506 6.34362 6.40372 6.98464 7.08489 7.13079 7.35840 7.86186 8.64722 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.002609 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.878896 B =10730.478202 C =11590.237156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.157 4.157 3 C 0.229 3.771 4 N -0.439 5.439 5 C -0.352 4.352 6 H 0.084 0.916 7 C 0.006 3.994 8 N -0.868 5.868 9 Si 0.985 3.015 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.434 3.566 14 O -0.614 6.614 15 C 0.120 3.880 16 N -0.698 5.698 17 C 0.561 3.439 18 O -0.568 6.568 19 C -0.120 4.120 20 C -0.054 4.054 21 C -0.114 4.114 22 C 0.090 3.910 23 F -0.127 7.127 24 C 0.051 3.949 25 F -0.132 7.132 26 C -0.067 4.067 27 H 0.231 0.769 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.273 0.727 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.416 0.584 34 H 0.165 0.835 35 H 0.187 0.813 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 -15.032 -0.459 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.159 4.159 3 C 0.106 3.894 4 N -0.157 5.157 5 C -0.479 4.479 6 H 0.102 0.898 7 C -0.199 4.199 8 N -0.505 5.505 9 Si 0.809 3.191 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.224 3.776 14 O -0.501 6.501 15 C -0.007 4.007 16 N -0.352 5.352 17 C 0.349 3.651 18 O -0.448 6.448 19 C -0.124 4.124 20 C -0.073 4.073 21 C -0.133 4.133 22 C 0.070 3.930 23 F -0.106 7.106 24 C 0.031 3.969 25 F -0.111 7.111 26 C -0.087 4.087 27 H 0.248 0.752 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.256 0.744 34 H 0.182 0.818 35 H 0.204 0.796 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.816 -14.971 -0.793 15.102 hybrid contribution -0.023 0.549 0.602 0.815 sum 1.792 -14.422 -0.191 14.534 Atomic orbital electron populations 1.25152 0.96412 1.03837 1.00609 1.23401 0.94994 0.97777 0.99721 1.18401 0.84603 1.02481 0.83890 1.43799 1.54946 1.04301 1.12608 1.19628 1.31782 0.87863 1.08613 0.89813 1.25985 0.95262 1.00595 0.98019 1.70183 1.19610 1.22249 1.38414 0.85058 0.78167 0.77220 0.78642 1.19092 1.20717 1.19934 1.20446 0.84515 0.84131 0.88550 1.90464 1.53223 1.82204 1.24238 1.20912 1.02797 0.81543 0.95459 1.45590 1.66147 1.04258 1.19235 1.18277 0.77342 0.84264 0.85233 1.90778 1.47191 1.87777 1.19092 1.19623 1.05014 0.91842 0.95901 1.21568 0.93781 0.99299 0.92611 1.21327 1.00649 0.88743 1.02531 1.18099 1.02037 0.82191 0.90677 1.91550 1.92656 1.42228 1.84144 1.17518 1.05906 0.83099 0.90382 1.91533 1.91843 1.48938 1.78783 1.21096 0.97242 0.88732 1.01631 0.75200 0.88409 0.88357 0.91704 0.87975 0.89455 0.74406 0.81802 0.79579 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.31 19.25 74.32 1.43 -7.88 16 2 C -0.16 -6.64 10.87 31.13 0.34 -6.30 16 3 C 0.23 9.45 4.91 84.58 0.42 9.86 16 4 N -0.44 -20.70 2.60 -645.42 -1.68 -22.38 16 5 C -0.35 -18.33 9.33 84.04 0.78 -17.54 16 6 H 0.08 4.65 7.39 -2.91 -0.02 4.63 16 7 C 0.01 0.28 4.87 84.93 0.41 0.70 16 8 N -0.87 -42.91 9.48 21.66 0.21 -42.71 16 9 Si 0.98 39.55 29.60 68.60 2.03 41.59 16 10 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 13 C 0.43 19.12 7.63 87.66 0.67 19.79 16 14 O -0.61 -29.94 15.32 -3.09 -0.05 -29.99 16 15 C 0.12 4.20 4.76 85.63 0.41 4.61 16 16 N -0.70 -21.04 5.48 -469.83 -2.57 -23.61 16 17 C 0.56 16.15 7.77 86.75 0.67 16.82 16 18 O -0.57 -19.75 16.34 -3.92 -0.06 -19.81 16 19 C -0.12 -2.65 5.87 -20.09 -0.12 -2.77 16 20 C -0.05 -0.89 9.53 22.52 0.21 -0.67 16 21 C -0.11 -1.56 10.01 22.27 0.22 -1.34 16 22 C 0.09 1.61 7.31 22.50 0.16 1.78 16 23 F -0.13 -2.43 17.17 44.97 0.77 -1.66 16 24 C 0.05 1.04 7.30 22.37 0.16 1.20 16 25 F -0.13 -2.95 17.17 44.97 0.77 -2.18 16 26 C -0.07 -1.43 9.57 22.56 0.22 -1.22 16 27 H 0.23 6.93 7.80 -4.42 -0.03 6.89 16 28 H 0.10 4.30 6.44 -2.39 -0.02 4.28 16 29 H 0.10 3.30 6.69 -2.39 -0.02 3.28 16 30 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 31 H 0.10 3.24 7.41 -2.39 -0.02 3.23 16 32 H 0.09 3.15 7.50 -2.39 -0.02 3.13 16 33 H 0.42 11.70 5.46 -92.71 -0.51 11.20 16 34 H 0.16 2.28 6.40 -2.91 -0.02 2.26 16 35 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.16 3.39 7.65 -2.91 -0.02 3.37 16 Total: -1.00 -64.46 332.58 6.07 -58.39 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.66 Total: 25.32 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 6.00 Total: 17.04 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -4.05 Total: -88.70 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.11 Total: -49.80 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 1.54 Total: -3.84 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.59 kcal Total: -64.46 6.07 -58.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962569.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.718 kcal (2) G-P(sol) polarization free energy of solvation -64.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds