Wall clock time and date at job start Fri Apr 10 2020 18:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47314 * 322.23664 * 3 2 1 5 5 C 1.37098 * 119.99742 * 264.13830 * 4 3 2 6 6 H 1.08003 * 119.99946 * 197.42969 * 5 4 3 7 7 C 1.38953 * 120.00210 * 17.42912 * 5 4 3 8 8 N 1.31409 * 119.99655 * 21.53761 * 7 5 4 9 9 Si 1.86794 * 120.00246 * 201.53549 * 7 5 4 10 10 H 1.48507 * 109.47002 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47442 * 119.99698 * 9 7 5 12 12 H 1.48499 * 109.47313 * 239.99972 * 9 7 5 13 13 C 1.34777 * 120.00025 * 84.13898 * 4 3 2 14 14 O 1.21299 * 119.99481 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00057 * 359.97438 * 13 4 3 16 16 N 1.46499 * 109.46750 * 179.97438 * 15 13 4 17 17 C 1.34778 * 119.99807 * 180.27482 * 16 15 13 18 18 O 1.21587 * 119.99712 * 359.72385 * 17 16 15 19 19 C 1.47569 * 120.00168 * 179.72650 * 17 16 15 20 20 C 1.39731 * 120.14179 * 359.72123 * 19 17 16 21 21 C 1.37738 * 119.90938 * 179.74151 * 20 19 17 22 22 C 1.38759 * 120.18542 * 0.54050 * 21 20 19 23 23 F 1.35102 * 119.85877 * 179.76231 * 22 21 20 24 24 C 1.38493 * 120.29027 * 359.73492 * 22 21 20 25 25 C 1.38199 * 120.09020 * 359.97438 * 24 22 21 26 26 F 1.35102 * 120.09973 * 179.97438 * 25 24 22 27 27 H 4.40633 * 5.51519 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.47083 * 202.23002 * 3 2 1 29 29 H 1.09006 * 109.46958 * 82.23812 * 3 2 1 30 30 H 0.97003 * 119.99793 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.47192 * 60.00476 * 15 13 4 32 32 H 1.08996 * 109.47106 * 300.00185 * 15 13 4 33 33 H 0.96998 * 120.00624 * 0.02562 * 16 15 13 34 34 H 1.08010 * 120.04723 * 0.02871 * 20 19 17 35 35 H 1.07992 * 119.91218 * 180.27646 * 21 20 19 36 36 H 1.07998 * 119.96360 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0910 0.8458 5 6 3.4775 -0.8465 2.1506 6 1 4.0903 -1.5538 2.6896 7 6 3.0365 0.3115 2.7795 8 7 1.9848 0.9500 2.3179 9 14 3.9386 0.9604 4.2809 10 1 5.0808 0.0656 4.5972 11 1 4.4436 2.3288 4.0019 12 1 3.0083 1.0024 5.4376 13 6 3.2477 -2.3357 0.3414 14 8 3.6520 -3.2396 1.0419 15 6 2.8704 -2.6046 -1.0927 16 7 3.0819 -4.0222 -1.3956 17 6 2.8150 -4.4948 -2.6292 18 8 2.3939 -3.7456 -3.4892 19 6 3.0337 -5.9216 -2.9361 20 6 3.5231 -6.7840 -1.9517 21 6 3.7204 -8.1160 -2.2418 22 6 3.4453 -8.6015 -3.5123 23 9 3.6458 -9.9081 -3.7910 24 6 2.9655 -7.7526 -4.4957 25 6 2.7575 -6.4153 -4.2157 26 9 2.2899 -5.5869 -5.1750 27 1 -1.0498 -0.0005 0.0001 28 1 3.0089 0.9521 0.3888 29 1 3.0093 -0.1380 -1.0183 30 1 1.6771 1.7585 2.7567 31 1 3.4900 -1.9963 -1.7515 32 1 1.8211 -2.3526 -1.2457 33 1 3.4175 -4.6201 -0.7094 34 1 3.7418 -6.4078 -0.9632 35 1 4.0944 -8.7835 -1.4797 36 1 2.7535 -8.1360 -5.4828 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490962995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:33 Heat of formation + Delta-G solvation = -57.149385 kcal Electronic energy + Delta-G solvation = -25825.678991 eV Core-core repulsion = 21527.645421 eV Total energy + Delta-G solvation = -4298.033571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.092 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.42070 -49.11481 -40.13933 -38.88326 -38.05569 -35.50348 -34.14104 -32.26759 -31.55714 -31.33631 -30.90319 -27.82072 -26.43933 -24.64810 -23.88675 -23.14127 -20.67216 -19.63998 -18.61595 -18.06657 -17.91172 -17.41410 -16.68938 -16.34393 -16.07480 -16.03333 -15.64637 -15.31642 -15.17206 -15.07560 -14.68447 -14.49304 -14.22648 -14.12311 -13.62876 -13.21657 -13.03460 -12.64313 -12.49276 -12.24867 -12.13619 -11.84922 -11.83068 -11.67203 -11.10275 -10.59084 -10.42228 -9.96964 -9.51786 -9.45008 -9.41520 -9.16324 -9.02211 -8.84524 -8.67630 -8.03351 -6.46573 -4.00101 0.23265 0.64199 2.52591 3.03997 3.07776 3.19845 3.26180 3.38750 3.45819 3.53081 3.78339 3.98370 3.99398 4.08904 4.16657 4.43740 4.53854 4.73395 4.78614 4.92712 5.30917 5.36406 5.37277 5.54301 5.56811 5.62238 5.65594 5.77349 5.93331 6.20016 6.30872 6.48480 6.64396 6.95606 7.43942 7.61580 7.85332 8.23393 8.27243 8.74400 8.94981 9.18269 9.67764 10.53594 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.002817 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.728833 B = 9937.408781 C =10903.030820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.120 4.120 3 C 0.227 3.773 4 N -0.427 5.427 5 C -0.319 4.319 6 H 0.107 0.893 7 C 0.034 3.966 8 N -0.855 5.855 9 Si 0.923 3.077 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.437 3.563 14 O -0.586 6.586 15 C 0.108 3.892 16 N -0.700 5.700 17 C 0.555 3.445 18 O -0.530 6.530 19 C -0.177 4.177 20 C -0.025 4.025 21 C -0.171 4.171 22 C 0.153 3.847 23 F -0.128 7.128 24 C -0.205 4.205 25 C 0.191 3.809 26 F -0.105 7.105 27 H 0.200 0.800 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.270 0.730 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.409 0.591 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 -12.394 -10.145 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.122 4.122 3 C 0.104 3.896 4 N -0.144 5.144 5 C -0.446 4.446 6 H 0.125 0.875 7 C -0.171 4.171 8 N -0.492 5.492 9 Si 0.749 3.251 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.225 3.775 14 O -0.472 6.472 15 C -0.019 4.019 16 N -0.355 5.355 17 C 0.341 3.659 18 O -0.408 6.408 19 C -0.182 4.182 20 C -0.044 4.044 21 C -0.190 4.190 22 C 0.133 3.867 23 F -0.106 7.106 24 C -0.225 4.225 25 C 0.170 3.830 26 F -0.083 7.083 27 H 0.217 0.783 28 H 0.131 0.869 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.249 0.751 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.883 -12.080 -10.360 16.025 hybrid contribution 0.001 0.178 0.917 0.934 sum 1.885 -11.903 -9.442 15.310 Atomic orbital electron populations 1.24303 0.95409 1.02451 1.04817 1.23049 0.94270 0.98436 0.96414 1.18346 0.84501 0.94045 0.92721 1.43649 1.54672 1.04969 1.11099 1.19727 1.30517 1.06732 0.87646 0.87490 1.25342 0.95024 0.97524 0.99256 1.70106 1.19333 1.18478 1.41303 0.85923 0.79696 0.78773 0.80675 1.19104 1.20472 1.20801 1.19830 0.85716 0.83351 0.88565 1.90491 1.52266 1.43279 1.61165 1.21124 1.02841 0.81690 0.96290 1.45596 1.66265 1.11113 1.12479 1.17788 0.78826 0.86609 0.82699 1.90847 1.45238 1.58193 1.46477 1.20184 1.08335 0.95565 0.94079 1.21230 0.92361 0.91852 0.98970 1.21160 1.05079 0.96771 0.95964 1.17509 0.97493 0.78181 0.93516 1.91554 1.92204 1.32660 1.94177 1.20994 1.07526 0.92137 1.01854 1.17251 0.93781 0.87022 0.84986 1.91638 1.84570 1.70869 1.61204 0.78272 0.86895 0.91597 0.91929 0.89623 0.89192 0.75148 0.82932 0.83163 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.11 19.25 29.55 0.57 -4.54 16 2 C -0.12 -2.62 10.87 -37.12 -0.40 -3.02 16 3 C 0.23 4.80 4.91 -6.83 -0.03 4.77 16 4 N -0.43 -10.14 2.60 -117.93 -0.31 -10.45 16 5 C -0.32 -8.28 9.33 -14.93 -0.14 -8.41 16 6 H 0.11 2.91 7.39 -52.48 -0.39 2.52 16 7 C 0.03 0.84 4.86 -17.47 -0.08 0.76 16 8 N -0.86 -21.45 9.48 55.50 0.53 -20.92 16 9 Si 0.92 19.46 29.60 -169.99 -5.03 14.43 16 10 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 13 C 0.44 9.82 7.63 -10.99 -0.08 9.73 16 14 O -0.59 -14.43 15.32 5.54 0.08 -14.34 16 15 C 0.11 1.99 4.76 -5.19 -0.02 1.97 16 16 N -0.70 -11.47 5.48 -62.52 -0.34 -11.82 16 17 C 0.55 8.95 7.76 -12.45 -0.10 8.85 16 18 O -0.53 -10.21 15.34 5.29 0.08 -10.13 16 19 C -0.18 -2.25 5.88 -104.91 -0.62 -2.87 16 20 C -0.03 -0.25 9.53 -39.21 -0.37 -0.62 16 21 C -0.17 -1.41 10.01 -39.57 -0.40 -1.81 16 22 C 0.15 1.37 7.30 -39.29 -0.29 1.08 16 23 F -0.13 -1.15 17.26 2.25 0.04 -1.11 16 24 C -0.21 -1.94 9.99 -39.50 -0.39 -2.33 16 25 C 0.19 2.32 7.28 -38.97 -0.28 2.04 16 26 F -0.10 -1.50 15.55 2.25 0.04 -1.47 16 27 H 0.20 3.32 7.80 -54.10 -0.42 2.90 16 28 H 0.11 2.50 6.44 -51.93 -0.33 2.17 16 29 H 0.07 1.17 6.69 -51.93 -0.35 0.82 16 30 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 31 H 0.09 1.48 7.41 -51.93 -0.39 1.09 16 32 H 0.09 1.72 7.50 -51.93 -0.39 1.33 16 33 H 0.41 6.26 5.46 -40.82 -0.22 6.03 16 34 H 0.15 1.31 6.40 -52.48 -0.34 0.98 16 35 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -30.93 330.84 -5.38 -36.31 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -2.80 Total: 8.92 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -2.65 Total: 5.58 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.12 Total: -43.19 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.17 Total: -24.47 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.07 Total: -2.58 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.93 -5.38 -36.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.837 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds