Wall clock time and date at job start Fri Apr 10 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47672 * 347.40288 * 3 2 1 5 5 C 1.36874 * 120.00216 * 270.34234 * 4 3 2 6 6 H 1.07996 * 120.00049 * 192.98060 * 5 4 3 7 7 C 1.39054 * 119.99746 * 12.97875 * 5 4 3 8 8 N 1.31366 * 119.99766 * 9.75787 * 7 5 4 9 9 Si 1.86797 * 119.99718 * 189.76094 * 7 5 4 10 10 H 1.48491 * 109.47307 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46911 * 120.00150 * 9 7 5 12 12 H 1.48500 * 109.46860 * 239.99601 * 9 7 5 13 13 C 1.34772 * 119.99924 * 90.33814 * 4 3 2 14 14 O 1.21591 * 119.99834 * 185.32211 * 13 4 3 15 15 C 1.47729 * 120.00320 * 5.32104 * 13 4 3 16 16 C 1.39663 * 120.14680 * 55.78609 * 15 13 4 17 17 C 1.37918 * 119.84516 * 179.97438 * 16 15 13 18 18 C 1.50702 * 119.92476 * 179.97438 * 17 16 15 19 19 C 1.38405 * 120.15198 * 0.02562 * 17 16 15 20 20 C 1.38356 * 120.30376 * 359.97438 * 19 17 16 21 21 C 1.37966 * 120.14930 * 359.73813 * 20 19 17 22 22 S 1.76200 * 120.07500 * 180.25284 * 21 20 19 23 23 N 1.65602 * 107.21516 * 114.05848 * 22 21 20 24 24 O 1.42096 * 106.40446 * 227.59494 * 22 21 20 25 25 O 1.42098 * 106.40135 * 0.51976 * 22 21 20 26 26 H 4.40637 * 5.51292 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46952 * 227.40011 * 3 2 1 28 28 H 1.08998 * 109.47371 * 107.40480 * 3 2 1 29 29 H 0.97000 * 119.99277 * 179.97438 * 8 7 5 30 30 H 1.08002 * 120.08073 * 359.96498 * 16 15 13 31 31 H 1.09001 * 109.46628 * 90.00211 * 18 17 16 32 32 H 1.09000 * 109.46610 * 209.99999 * 18 17 16 33 33 H 1.08991 * 109.46830 * 330.00029 * 18 17 16 34 34 H 1.07994 * 119.84533 * 180.02562 * 19 17 16 35 35 H 1.07994 * 119.92728 * 180.02562 * 20 19 17 36 36 H 0.97000 * 120.00196 * 150.00106 * 23 22 21 37 37 H 0.96998 * 119.99991 * 329.99905 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3470 0.3012 5 6 3.3567 -1.7204 1.5992 6 1 3.9083 -2.6236 1.8146 7 6 2.8717 -0.9369 2.6406 8 7 2.0428 0.0506 2.3885 9 14 3.3991 -1.2883 4.3977 10 1 4.3304 -2.4448 4.4132 11 1 4.0823 -0.0945 4.9577 12 1 2.2034 -1.6052 5.2194 13 6 3.3666 -2.2192 -0.6998 14 8 3.6791 -3.3666 -0.4462 15 6 3.2407 -1.7813 -2.1050 16 6 3.9766 -0.6882 -2.5677 17 6 3.8547 -0.2850 -3.8810 18 6 4.6475 0.8946 -4.3820 19 6 3.0050 -0.9607 -4.7396 20 6 2.2731 -2.0444 -4.2879 21 6 2.3899 -2.4621 -2.9782 22 16 1.4618 -3.8465 -2.4067 23 7 2.5446 -5.0442 -2.0386 24 8 0.8674 -3.4516 -1.1779 25 8 0.7106 -4.3127 -3.5191 26 1 -1.0497 -0.0003 0.0003 27 1 3.0090 0.6964 0.7565 28 1 3.0092 0.3082 -0.9806 29 1 1.7042 0.5969 3.1150 30 1 4.6395 -0.1597 -1.8986 31 1 5.6072 0.5501 -4.7672 32 1 4.0940 1.3926 -5.1781 33 1 4.8146 1.5942 -3.5631 34 1 2.9137 -0.6410 -5.7671 35 1 1.6123 -2.5674 -4.9632 36 1 2.3396 -5.6857 -1.3405 37 1 3.3839 -5.1043 -2.5212 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490994370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:51 Heat of formation + Delta-G solvation = 1.542745 kcal Electronic energy + Delta-G solvation = -26025.112630 eV Core-core repulsion = 22283.464528 eV Total energy + Delta-G solvation = -3741.648102 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.81715 -37.98571 -36.52727 -35.29709 -35.24019 -32.87112 -32.50221 -32.19821 -31.32449 -30.72431 -27.24535 -26.49661 -25.17376 -23.06948 -22.02523 -19.69974 -18.84614 -17.98579 -17.71947 -16.82564 -16.65728 -16.40063 -15.98206 -15.52606 -14.94465 -14.48340 -14.30294 -14.10065 -13.98823 -13.77807 -13.66952 -12.90828 -12.61665 -12.35379 -12.26888 -12.02932 -11.89272 -11.65830 -11.47032 -11.45808 -11.33041 -11.22667 -11.09459 -10.52793 -10.43582 -10.38938 -9.76477 -9.48298 -9.21887 -9.00567 -8.82950 -8.70134 -8.45556 -7.98457 -6.39528 -3.93559 0.81892 1.08785 1.33620 3.06115 3.19628 3.25782 3.37742 3.58686 3.73493 3.97045 4.13917 4.24362 4.28211 4.65025 4.75730 4.84772 5.02237 5.08224 5.20840 5.43714 5.49277 5.54404 5.68753 5.69264 5.71743 5.95257 6.06840 6.19494 6.29581 6.36045 6.51257 6.61210 6.88043 6.95191 7.18459 7.43678 7.65803 7.85930 8.29437 8.97844 9.00949 9.20400 9.71753 10.54577 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.013341 B = 0.006170 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.271588 B = 4536.865814 C = 5428.343722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.106 4.106 3 C 0.217 3.783 4 N -0.405 5.405 5 C -0.295 4.295 6 H 0.112 0.888 7 C 0.028 3.972 8 N -0.858 5.858 9 Si 0.935 3.065 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.451 3.549 14 O -0.571 6.571 15 C 0.023 3.977 16 C -0.128 4.128 17 C -0.036 4.036 18 C -0.120 4.120 19 C -0.148 4.148 20 C -0.022 4.022 21 C -0.656 4.656 22 S 2.699 3.301 23 N -1.223 6.223 24 O -0.939 6.939 25 O -0.985 6.985 26 H 0.197 0.803 27 H 0.126 0.874 28 H 0.063 0.937 29 H 0.271 0.729 30 H 0.136 0.864 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.143 0.857 36 H 0.418 0.582 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.947 1.508 -11.522 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.108 4.108 3 C 0.095 3.905 4 N -0.119 5.119 5 C -0.423 4.423 6 H 0.129 0.871 7 C -0.177 4.177 8 N -0.496 5.496 9 Si 0.761 3.239 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.239 3.761 14 O -0.457 6.457 15 C 0.018 3.982 16 C -0.148 4.148 17 C -0.036 4.036 18 C -0.177 4.177 19 C -0.167 4.167 20 C -0.041 4.041 21 C -0.744 4.744 22 S 2.786 3.214 23 N -0.895 5.895 24 O -0.928 6.928 25 O -0.975 6.975 26 H 0.214 0.786 27 H 0.143 0.857 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.154 0.846 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.248 0.752 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.970 1.226 -11.162 11.615 hybrid contribution 0.655 0.214 0.849 1.093 sum 3.625 1.440 -10.313 11.026 Atomic orbital electron populations 1.24184 0.95339 1.01511 1.06759 1.22834 0.94059 0.98841 0.95048 1.18816 0.85052 0.86701 0.99940 1.43639 1.52546 1.09843 1.05858 1.19931 1.32158 1.10407 0.79778 0.87061 1.25465 0.95165 0.96281 1.00778 1.70019 1.28004 1.18777 1.32843 0.85715 0.78582 0.78511 0.81065 1.19060 1.20517 1.20569 1.17847 0.88159 0.86331 0.83749 1.90676 1.54738 1.17049 1.83237 1.20006 0.91298 0.92395 0.94486 1.21322 1.00860 0.97031 0.95589 1.20119 0.94696 0.95456 0.93318 1.20908 0.99528 0.95288 1.01938 1.21118 0.98588 0.97178 0.99795 1.20870 0.95443 0.94808 0.93015 1.30710 1.17577 1.23198 1.02908 1.01559 0.72882 0.73273 0.73698 1.52629 1.35925 1.48178 1.52798 1.93697 1.74588 1.81657 1.42894 1.93548 1.67949 1.80517 1.55473 0.78577 0.85668 0.91918 0.91760 0.84634 0.90575 0.91108 0.90858 0.85318 0.83976 0.75233 0.76224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -6.03 19.25 29.55 0.57 -5.46 16 2 C -0.11 -2.60 11.45 -37.13 -0.42 -3.02 16 3 C 0.22 4.99 4.99 -6.83 -0.03 4.96 16 4 N -0.40 -10.22 2.58 -119.06 -0.31 -10.52 16 5 C -0.30 -7.94 9.45 -15.00 -0.14 -8.08 16 6 H 0.11 3.08 7.29 -52.49 -0.38 2.69 16 7 C 0.03 0.70 5.22 -17.45 -0.09 0.61 16 8 N -0.86 -22.07 8.49 55.50 0.47 -21.60 16 9 Si 0.94 20.14 29.56 -169.99 -5.03 15.11 16 10 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.45 10.80 5.45 -12.38 -0.07 10.73 16 14 O -0.57 -14.36 13.91 3.57 0.05 -14.31 16 15 C 0.02 0.46 4.91 -104.97 -0.52 -0.05 16 16 C -0.13 -2.11 7.19 -39.17 -0.28 -2.39 16 17 C -0.04 -0.47 5.87 -104.68 -0.61 -1.09 16 18 C -0.12 -1.12 10.01 36.01 0.36 -0.76 16 19 C -0.15 -1.92 9.69 -39.48 -0.38 -2.30 16 20 C -0.02 -0.34 9.54 -39.64 -0.38 -0.71 16 21 C -0.66 -12.10 5.94 -39.16 -0.23 -12.33 16 22 S 2.70 52.18 5.49 -107.50 -0.59 51.59 16 23 N -1.22 -19.93 7.48 60.35 0.45 -19.48 16 24 O -0.94 -22.72 16.54 -60.00 -0.99 -23.72 16 25 O -0.99 -19.26 16.97 -57.17 -0.97 -20.23 16 26 H 0.20 3.84 7.80 -54.11 -0.42 3.42 16 27 H 0.13 2.94 6.13 -51.93 -0.32 2.62 16 28 H 0.06 1.24 4.49 -51.93 -0.23 1.00 16 29 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.14 2.06 7.53 -52.49 -0.40 1.67 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.14 1.90 7.33 -52.49 -0.38 1.51 16 36 H 0.42 6.36 8.96 -34.47 -0.31 6.05 16 37 H 0.41 5.71 8.96 -34.47 -0.31 5.40 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -34.77 330.48 -7.74 -42.51 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -3.57 Total: 15.57 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -2.24 Total: -19.91 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.62 Total: -51.60 kcal Atomic # 8 Polarization: -56.35 SS G_CDS: -1.91 Total: -58.26 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Atomic # 16 Polarization: 52.18 SS G_CDS: -0.59 Total: 51.59 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.77 -7.74 -42.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.057 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds