Wall clock time and date at job start Fri Apr 10 2020 18:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47672 * 347.40288 * 3 2 1 5 5 C 1.36874 * 120.00216 * 270.34234 * 4 3 2 6 6 H 1.07996 * 120.00049 * 192.98060 * 5 4 3 7 7 C 1.39054 * 119.99746 * 12.97875 * 5 4 3 8 8 N 1.31366 * 119.99766 * 9.75787 * 7 5 4 9 9 Si 1.86797 * 119.99718 * 189.76094 * 7 5 4 10 10 H 1.48491 * 109.47307 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46911 * 120.00150 * 9 7 5 12 12 H 1.48500 * 109.46860 * 239.99601 * 9 7 5 13 13 C 1.34772 * 119.99924 * 90.33814 * 4 3 2 14 14 O 1.21591 * 119.99834 * 185.32211 * 13 4 3 15 15 C 1.47729 * 120.00320 * 5.32104 * 13 4 3 16 16 C 1.39663 * 120.14680 * 55.78609 * 15 13 4 17 17 C 1.37918 * 119.84516 * 179.97438 * 16 15 13 18 18 C 1.50702 * 119.92476 * 179.97438 * 17 16 15 19 19 C 1.38405 * 120.15198 * 0.02562 * 17 16 15 20 20 C 1.38356 * 120.30376 * 359.97438 * 19 17 16 21 21 C 1.37966 * 120.14930 * 359.73813 * 20 19 17 22 22 S 1.76200 * 120.07500 * 180.25284 * 21 20 19 23 23 N 1.65602 * 107.21516 * 114.05848 * 22 21 20 24 24 O 1.42096 * 106.40446 * 227.59494 * 22 21 20 25 25 O 1.42098 * 106.40135 * 0.51976 * 22 21 20 26 26 H 4.40637 * 5.51292 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46952 * 227.40011 * 3 2 1 28 28 H 1.08998 * 109.47371 * 107.40480 * 3 2 1 29 29 H 0.97000 * 119.99277 * 179.97438 * 8 7 5 30 30 H 1.08002 * 120.08073 * 359.96498 * 16 15 13 31 31 H 1.09001 * 109.46628 * 90.00211 * 18 17 16 32 32 H 1.09000 * 109.46610 * 209.99999 * 18 17 16 33 33 H 1.08991 * 109.46830 * 330.00029 * 18 17 16 34 34 H 1.07994 * 119.84533 * 180.02562 * 19 17 16 35 35 H 1.07994 * 119.92728 * 180.02562 * 20 19 17 36 36 H 0.97000 * 120.00196 * 150.00106 * 23 22 21 37 37 H 0.96998 * 119.99991 * 329.99905 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3470 0.3012 5 6 3.3567 -1.7204 1.5992 6 1 3.9083 -2.6236 1.8146 7 6 2.8717 -0.9369 2.6406 8 7 2.0428 0.0506 2.3885 9 14 3.3991 -1.2883 4.3977 10 1 4.3304 -2.4448 4.4132 11 1 4.0823 -0.0945 4.9577 12 1 2.2034 -1.6052 5.2194 13 6 3.3666 -2.2192 -0.6998 14 8 3.6791 -3.3666 -0.4462 15 6 3.2407 -1.7813 -2.1050 16 6 3.9766 -0.6882 -2.5677 17 6 3.8547 -0.2850 -3.8810 18 6 4.6475 0.8946 -4.3820 19 6 3.0050 -0.9607 -4.7396 20 6 2.2731 -2.0444 -4.2879 21 6 2.3899 -2.4621 -2.9782 22 16 1.4618 -3.8465 -2.4067 23 7 2.5446 -5.0442 -2.0386 24 8 0.8674 -3.4516 -1.1779 25 8 0.7106 -4.3127 -3.5191 26 1 -1.0497 -0.0003 0.0003 27 1 3.0090 0.6964 0.7565 28 1 3.0092 0.3082 -0.9806 29 1 1.7042 0.5969 3.1150 30 1 4.6395 -0.1597 -1.8986 31 1 5.6072 0.5501 -4.7672 32 1 4.0940 1.3926 -5.1781 33 1 4.8146 1.5942 -3.5631 34 1 2.9137 -0.6410 -5.7671 35 1 1.6123 -2.5674 -4.9632 36 1 2.3396 -5.6857 -1.3405 37 1 3.3839 -5.1043 -2.5212 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490994370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:50 Heat of formation + Delta-G solvation = -24.519696 kcal Electronic energy + Delta-G solvation = -26026.242782 eV Core-core repulsion = 22283.464528 eV Total energy + Delta-G solvation = -3742.778254 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31837 -39.49898 -38.14693 -37.13838 -36.88954 -34.11810 -33.94684 -33.86814 -33.12570 -32.16011 -28.40538 -28.15349 -26.93555 -24.54245 -23.25810 -21.28400 -20.34443 -19.79767 -19.23438 -18.37638 -18.29480 -18.06172 -17.48138 -16.90160 -16.66681 -16.02781 -15.94302 -15.53829 -15.37997 -15.25513 -14.80453 -14.50676 -14.13996 -14.09915 -13.34636 -13.28850 -13.20947 -13.16170 -13.10350 -13.01535 -12.98393 -12.81599 -12.47471 -12.41954 -12.13013 -11.84225 -11.35418 -11.18798 -11.03888 -10.63277 -10.41366 -10.11654 -10.01214 -9.79888 -8.29027 -5.93669 -0.54568 -0.31355 0.09243 1.34307 1.41343 1.55150 1.77538 2.07764 2.18681 2.32750 2.41414 2.43623 2.75540 3.03137 3.09557 3.48085 3.76871 3.85077 3.88953 3.94662 4.23881 4.31841 4.50860 4.59061 4.66334 4.87518 4.89138 5.01172 5.04043 5.07665 5.26249 5.32829 5.41538 5.42735 5.43758 5.81469 5.96232 6.38243 6.40806 7.06043 7.17557 7.33942 7.85217 8.63685 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.013341 B = 0.006170 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.271588 B = 4536.865814 C = 5428.343722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.136 4.136 3 C 0.221 3.779 4 N -0.424 5.424 5 C -0.335 4.335 6 H 0.088 0.912 7 C -0.005 4.005 8 N -0.875 5.875 9 Si 0.996 3.004 10 H -0.270 1.270 11 H -0.262 1.262 12 H -0.283 1.283 13 C 0.450 3.550 14 O -0.595 6.595 15 C -0.009 4.009 16 C -0.137 4.137 17 C -0.022 4.022 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.026 4.026 21 C -0.668 4.668 22 S 2.706 3.294 23 N -1.214 6.214 24 O -0.996 6.996 25 O -0.992 6.992 26 H 0.225 0.775 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.273 0.727 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.178 0.822 35 H 0.162 0.838 36 H 0.422 0.578 37 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.715 3.102 -14.225 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.138 4.138 3 C 0.100 3.900 4 N -0.139 5.139 5 C -0.463 4.463 6 H 0.106 0.894 7 C -0.207 4.207 8 N -0.513 5.513 9 Si 0.819 3.181 10 H -0.195 1.195 11 H -0.186 1.186 12 H -0.209 1.209 13 C 0.240 3.760 14 O -0.483 6.483 15 C -0.013 4.013 16 C -0.156 4.156 17 C -0.022 4.022 18 C -0.176 4.176 19 C -0.147 4.147 20 C -0.045 4.045 21 C -0.758 4.758 22 S 2.796 3.204 23 N -0.890 5.890 24 O -0.985 6.985 25 O -0.982 6.982 26 H 0.242 0.758 27 H 0.132 0.868 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.159 0.841 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.195 0.805 35 H 0.180 0.820 36 H 0.252 0.748 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.736 2.807 -13.883 14.649 hybrid contribution 0.459 -0.295 1.435 1.535 sum 4.195 2.512 -12.449 13.374 Atomic orbital electron populations 1.25014 0.96439 1.00745 1.06182 1.23434 0.95088 0.99577 0.95684 1.18842 0.84532 0.85619 1.01052 1.43728 1.53592 1.10957 1.05605 1.19854 1.34212 1.10682 0.81507 0.89390 1.26157 0.94850 0.95943 1.03796 1.70127 1.28329 1.19176 1.33662 0.84837 0.77901 0.78687 0.76649 1.19475 1.18650 1.20924 1.18578 0.86052 0.85943 0.85464 1.90618 1.55074 1.18145 1.84415 1.19695 0.94313 0.95056 0.92283 1.21494 1.00577 0.96036 0.97497 1.20615 0.93938 0.95951 0.91692 1.21050 1.00072 0.93592 1.02879 1.21705 0.96117 0.95094 1.01809 1.21248 0.95892 0.95635 0.91711 1.30419 1.18120 1.22928 1.04347 1.00950 0.73117 0.73621 0.72691 1.52381 1.36191 1.47418 1.53042 1.93633 1.76529 1.82781 1.45594 1.93527 1.68852 1.80814 1.54975 0.75806 0.86784 0.88998 0.91635 0.84128 0.88533 0.88493 0.90426 0.80478 0.82041 0.74761 0.74843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.44 19.25 74.32 1.43 -11.01 16 2 C -0.14 -6.78 11.45 31.12 0.36 -6.43 16 3 C 0.22 10.41 4.99 84.57 0.42 10.83 16 4 N -0.42 -22.23 2.58 -648.85 -1.67 -23.90 16 5 C -0.34 -18.90 9.45 84.10 0.79 -18.11 16 6 H 0.09 5.20 7.29 -2.91 -0.02 5.18 16 7 C -0.01 -0.27 5.22 84.96 0.44 0.18 16 8 N -0.88 -46.08 8.49 21.68 0.18 -45.90 16 9 Si 1.00 42.40 29.56 68.60 2.03 44.43 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 C 0.45 22.30 5.45 86.75 0.47 22.78 16 14 O -0.60 -31.33 13.91 -2.36 -0.03 -31.36 16 15 C -0.01 -0.35 4.91 -20.09 -0.10 -0.45 16 16 C -0.14 -4.23 7.19 22.54 0.16 -4.07 16 17 C -0.02 -0.48 5.87 -19.90 -0.12 -0.60 16 18 C -0.12 -1.58 10.01 71.24 0.71 -0.87 16 19 C -0.13 -2.68 9.69 22.34 0.22 -2.46 16 20 C -0.03 -0.70 9.54 22.23 0.21 -0.49 16 21 C -0.67 -24.07 5.94 22.54 0.13 -23.94 16 22 S 2.71 106.30 5.49 -56.49 -0.31 105.98 16 23 N -1.21 -40.59 7.48 37.02 0.28 -40.31 16 24 O -1.00 -50.27 16.54 -125.30 -2.07 -52.34 16 25 O -0.99 -38.46 16.97 -128.00 -2.17 -40.63 16 26 H 0.23 8.65 7.80 -4.43 -0.03 8.62 16 27 H 0.11 5.53 6.13 -2.39 -0.01 5.51 16 28 H 0.09 3.63 4.49 -2.39 -0.01 3.62 16 29 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 30 H 0.14 4.11 7.53 -2.91 -0.02 4.09 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 0.86 8.08 -2.39 -0.02 0.84 16 33 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 34 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.16 3.75 7.33 -2.91 -0.02 3.73 16 36 H 0.42 13.40 8.96 -96.74 -0.87 12.53 16 37 H 0.42 11.87 8.96 -96.75 -0.87 11.00 16 Total: -1.00 -79.35 330.48 0.78 -78.57 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -0.59 Total: 40.09 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 5.14 Total: -34.63 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -1.21 Total: -110.11 kcal Atomic # 8 Polarization: -120.06 SS G_CDS: -4.28 Total: -124.33 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 106.30 SS G_CDS: -0.31 Total: 105.98 kcal Total: -79.35 0.78 -78.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.055 kcal (2) G-P(sol) polarization free energy of solvation -79.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds