Wall clock time and date at job start Fri Apr 10 2020 18:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86790 * 119.99960 * 2 1 4 4 H 1.48504 * 109.47467 * 239.99696 * 3 2 1 5 5 H 1.48500 * 109.47261 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47136 * 120.00133 * 3 2 1 7 7 C 1.38816 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00156 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99961 * 359.97438 * 7 2 1 10 10 S 1.65598 * 119.99932 * 180.02562 * 9 7 2 11 11 O 1.42105 * 106.40163 * 311.45788 * 10 9 7 12 12 O 1.42094 * 106.40420 * 178.54186 * 10 9 7 13 13 C 1.76192 * 107.22051 * 64.99742 * 10 9 7 14 14 C 1.39247 * 118.75951 * 269.97599 * 13 10 9 15 15 C 1.38265 * 117.09158 * 180.65539 * 14 13 10 16 16 C 1.38565 * 120.14487 * 0.64576 * 15 14 13 17 17 C 1.39624 * 122.75104 * 357.64117 * 16 15 14 18 18 C 1.37563 * 116.79101 * 2.65943 * 17 16 15 19 19 C 1.49875 * 117.64467 * 184.32706 * 17 16 15 20 20 C 1.52724 * 111.12741 * 330.60739 * 19 17 16 21 21 C 1.50995 * 112.63836 * 45.32998 * 20 19 17 22 22 O 1.21292 * 120.82667 * 141.47592 * 21 20 19 23 23 N 1.35112 * 118.35059 * 321.46671 * 21 20 19 24 24 C 1.45927 * 130.82641 * 194.85497 * 23 21 20 25 25 C 1.49891 * 132.18940 * 181.59932 * 15 14 13 26 26 H 0.96994 * 120.00504 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99926 * 359.97438 * 9 7 2 28 28 H 1.07996 * 121.45184 * 0.70277 * 14 13 10 29 29 H 1.07997 * 119.65434 * 178.69712 * 18 17 16 30 30 H 1.08998 * 109.14463 * 91.03408 * 19 17 16 31 31 H 1.08998 * 109.14642 * 210.23569 * 19 17 16 32 32 H 1.08997 * 108.84563 * 166.14543 * 20 19 17 33 33 H 1.09002 * 108.84568 * 284.62044 * 20 19 17 34 34 H 1.09001 * 110.24750 * 293.56031 * 24 23 21 35 35 H 1.08994 * 110.24895 * 55.56882 * 24 23 21 36 36 H 1.08994 * 110.38290 * 298.29395 * 25 15 14 37 37 H 1.09003 * 110.38609 * 60.66465 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 16 2.1536 -3.8222 -0.0005 11 8 3.1358 -3.7184 -1.0222 12 8 1.1741 -4.8511 0.0341 13 6 3.0304 -3.9183 1.5247 14 6 4.3221 -3.4021 1.5886 15 6 4.9835 -3.5082 2.7981 16 6 4.3660 -4.1195 3.8776 17 6 3.0586 -4.6066 3.8235 18 6 2.4087 -4.5053 2.6154 19 6 2.4691 -5.1576 5.0865 20 6 3.5521 -5.7450 5.9890 21 6 4.7594 -4.8461 6.1089 22 8 5.3419 -4.7254 7.1659 23 7 5.1747 -4.1796 5.0094 24 6 6.4291 -3.4882 4.7300 25 6 6.3386 -3.0521 3.2478 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0002 28 1 4.7867 -2.9384 0.7310 29 1 1.4032 -4.8868 2.5159 30 1 1.9545 -4.3581 5.6193 31 1 1.7518 -5.9389 4.8350 32 1 3.1333 -5.9065 6.9823 33 1 3.8686 -6.7047 5.5804 34 1 6.5302 -2.6150 5.3745 35 1 7.2723 -4.1638 4.8736 36 1 7.1172 -3.5390 2.6607 37 1 6.4213 -1.9684 3.1652 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530153540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:29 Heat of formation + Delta-G solvation = -78.251346 kcal Electronic energy + Delta-G solvation = -25153.819177 eV Core-core repulsion = 21408.710943 eV Total energy + Delta-G solvation = -3745.108234 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.64424 -38.78649 -36.54012 -36.13794 -35.10722 -34.75601 -34.64106 -31.20832 -30.98230 -29.83038 -29.15702 -25.07742 -24.54321 -23.67134 -22.70179 -21.60667 -19.10511 -18.28609 -18.15406 -17.47662 -16.88180 -16.49284 -16.38417 -16.04036 -15.09755 -14.97509 -14.85382 -14.51569 -14.21390 -14.13461 -13.61316 -13.31336 -13.04951 -12.85398 -12.45900 -12.38406 -12.27980 -12.00416 -11.95942 -11.55055 -11.32910 -11.16436 -11.10092 -11.00063 -10.89617 -10.63026 -10.52778 -10.28525 -10.21959 -10.05898 -9.92748 -8.59171 -8.32816 -7.90701 -6.50092 -3.94093 0.93596 1.40469 1.54920 2.27262 2.56088 3.16106 3.19933 3.21801 3.57507 4.02971 4.08944 4.27658 4.42068 4.45064 4.64435 4.69607 4.76727 4.86029 4.96319 4.98514 5.08778 5.14940 5.35607 5.43342 5.44994 5.57005 5.66045 5.68409 5.70513 5.81194 5.92487 6.13863 6.28399 6.38168 6.48627 6.92608 6.97691 7.17357 7.45242 7.65597 8.62240 8.76502 9.18901 10.65846 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.004670 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.187785 B = 5994.845062 C = 6707.659864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.033 3.967 3 Si 0.921 3.079 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.278 4.278 8 H 0.103 0.897 9 N -0.949 5.949 10 S 2.621 3.379 11 O -0.972 6.972 12 O -1.001 7.001 13 C -0.679 4.679 14 C 0.032 3.968 15 C -0.154 4.154 16 C 0.165 3.835 17 C -0.140 4.140 18 C 0.013 3.987 19 C -0.069 4.069 20 C -0.137 4.137 21 C 0.536 3.464 22 O -0.521 6.521 23 N -0.560 5.560 24 C 0.110 3.890 25 C -0.084 4.084 26 H 0.275 0.725 27 H 0.411 0.589 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.514 -6.391 8.586 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.175 4.175 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.417 4.417 8 H 0.120 0.880 9 N -0.701 5.701 10 S 2.711 3.289 11 O -0.962 6.962 12 O -0.991 6.991 13 C -0.761 4.761 14 C 0.012 3.988 15 C -0.158 4.158 16 C 0.068 3.932 17 C -0.144 4.144 18 C -0.007 4.007 19 C -0.106 4.106 20 C -0.176 4.176 21 C 0.327 3.673 22 O -0.396 6.396 23 N -0.284 5.284 24 C -0.011 4.011 25 C -0.121 4.121 26 H 0.085 0.915 27 H 0.247 0.753 28 H 0.168 0.832 29 H 0.159 0.841 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.023 -7.019 8.800 13.823 hybrid contribution 0.277 1.183 0.884 1.503 sum 8.300 -5.835 9.685 14.026 Atomic orbital electron populations 1.69672 1.05964 1.28413 1.47941 1.25216 0.95630 0.99394 0.97258 0.86081 0.79116 0.80933 0.79152 1.19482 1.20723 1.19834 1.19228 0.92083 0.82993 1.47422 0.87961 1.51693 1.17032 1.19197 1.82217 1.05891 0.73162 0.73538 0.76274 1.93475 1.61307 1.86966 1.54462 1.93418 1.59909 1.57731 1.88001 1.31947 1.07814 1.11503 1.24823 1.20577 0.91246 0.91459 0.95509 1.19700 0.96979 1.05216 0.93917 1.18814 0.91515 0.96065 0.86784 1.19279 0.92656 1.06119 0.96323 1.20283 0.98859 0.91940 0.89631 1.20049 0.97159 1.01482 0.91950 1.21716 0.93459 0.99031 1.03419 1.20888 0.85759 0.79013 0.81614 1.90724 1.58695 1.63020 1.27160 1.46011 1.17564 1.51611 1.13171 1.22137 0.85262 0.97135 0.96573 1.21056 0.94932 1.02741 0.93394 0.91525 0.75323 0.83237 0.84133 0.89796 0.88675 0.87341 0.87889 0.90022 0.90081 0.88916 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.61 13.06 55.49 0.72 -21.88 16 2 C 0.03 0.80 5.50 -17.43 -0.10 0.70 16 3 Si 0.92 19.01 29.55 -169.99 -5.02 13.99 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.28 -6.70 9.63 -15.06 -0.15 -6.84 16 8 H 0.10 2.30 7.82 -52.49 -0.41 1.89 16 9 N -0.95 -21.79 5.75 31.50 0.18 -21.61 16 10 S 2.62 54.83 5.67 -107.50 -0.61 54.22 16 11 O -0.97 -22.33 16.94 -57.17 -0.97 -23.29 16 12 O -1.00 -22.19 17.15 -57.17 -0.98 -23.17 16 13 C -0.68 -12.35 5.91 -39.08 -0.23 -12.58 16 14 C 0.03 0.53 9.64 -39.20 -0.38 0.15 16 15 C -0.15 -2.29 6.26 -104.88 -0.66 -2.94 16 16 C 0.16 2.45 6.34 -83.86 -0.53 1.92 16 17 C -0.14 -2.03 5.79 -104.75 -0.61 -2.64 16 18 C 0.01 0.20 9.32 -39.70 -0.37 -0.17 16 19 C -0.07 -0.75 6.08 -28.42 -0.17 -0.92 16 20 C -0.14 -1.38 5.97 -27.88 -0.17 -1.55 16 21 C 0.54 7.34 7.76 -10.69 -0.08 7.26 16 22 O -0.52 -8.52 17.79 5.55 0.10 -8.42 16 23 N -0.56 -7.67 3.17 -112.72 -0.36 -8.03 16 24 C 0.11 1.24 7.56 -3.42 -0.03 1.21 16 25 C -0.08 -0.92 6.91 -27.35 -0.19 -1.11 16 26 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 27 H 0.41 9.62 8.02 -34.47 -0.28 9.34 16 28 H 0.15 2.36 7.63 -52.49 -0.40 1.96 16 29 H 0.14 2.13 7.50 -52.49 -0.39 1.74 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 327.48 15.07 4.94 4.94 Total: -1.00 -31.92 327.48 -9.65 -41.57 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.00 Total: 9.20 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -3.65 Total: -17.51 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.55 Total: -51.52 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -1.85 Total: -54.89 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Atomic # 16 Polarization: 54.83 SS G_CDS: -0.61 Total: 54.22 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.92 -9.65 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530153540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.686 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds