Wall clock time and date at job start Fri Apr 10 2020 18:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86790 * 119.99960 * 2 1 4 4 H 1.48504 * 109.47467 * 239.99696 * 3 2 1 5 5 H 1.48500 * 109.47261 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47136 * 120.00133 * 3 2 1 7 7 C 1.38816 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00156 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99961 * 359.97438 * 7 2 1 10 10 S 1.65598 * 119.99932 * 180.02562 * 9 7 2 11 11 O 1.42105 * 106.40163 * 311.45788 * 10 9 7 12 12 O 1.42094 * 106.40420 * 178.54186 * 10 9 7 13 13 C 1.76192 * 107.22051 * 64.99742 * 10 9 7 14 14 C 1.39247 * 118.75951 * 269.97599 * 13 10 9 15 15 C 1.38265 * 117.09158 * 180.65539 * 14 13 10 16 16 C 1.38565 * 120.14487 * 0.64576 * 15 14 13 17 17 C 1.39624 * 122.75104 * 357.64117 * 16 15 14 18 18 C 1.37563 * 116.79101 * 2.65943 * 17 16 15 19 19 C 1.49875 * 117.64467 * 184.32706 * 17 16 15 20 20 C 1.52724 * 111.12741 * 330.60739 * 19 17 16 21 21 C 1.50995 * 112.63836 * 45.32998 * 20 19 17 22 22 O 1.21292 * 120.82667 * 141.47592 * 21 20 19 23 23 N 1.35112 * 118.35059 * 321.46671 * 21 20 19 24 24 C 1.45927 * 130.82641 * 194.85497 * 23 21 20 25 25 C 1.49891 * 132.18940 * 181.59932 * 15 14 13 26 26 H 0.96994 * 120.00504 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99926 * 359.97438 * 9 7 2 28 28 H 1.07996 * 121.45184 * 0.70277 * 14 13 10 29 29 H 1.07997 * 119.65434 * 178.69712 * 18 17 16 30 30 H 1.08998 * 109.14463 * 91.03408 * 19 17 16 31 31 H 1.08998 * 109.14642 * 210.23569 * 19 17 16 32 32 H 1.08997 * 108.84563 * 166.14543 * 20 19 17 33 33 H 1.09002 * 108.84568 * 284.62044 * 20 19 17 34 34 H 1.09001 * 110.24750 * 293.56031 * 24 23 21 35 35 H 1.08994 * 110.24895 * 55.56882 * 24 23 21 36 36 H 1.08994 * 110.38290 * 298.29395 * 25 15 14 37 37 H 1.09003 * 110.38609 * 60.66465 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 16 2.1536 -3.8222 -0.0005 11 8 3.1358 -3.7184 -1.0222 12 8 1.1741 -4.8511 0.0341 13 6 3.0304 -3.9183 1.5247 14 6 4.3221 -3.4021 1.5886 15 6 4.9835 -3.5082 2.7981 16 6 4.3660 -4.1195 3.8776 17 6 3.0586 -4.6066 3.8235 18 6 2.4087 -4.5053 2.6154 19 6 2.4691 -5.1576 5.0865 20 6 3.5521 -5.7450 5.9890 21 6 4.7594 -4.8461 6.1089 22 8 5.3419 -4.7254 7.1659 23 7 5.1747 -4.1796 5.0094 24 6 6.4291 -3.4882 4.7300 25 6 6.3386 -3.0521 3.2478 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0002 28 1 4.7867 -2.9384 0.7310 29 1 1.4032 -4.8868 2.5159 30 1 1.9545 -4.3581 5.6193 31 1 1.7518 -5.9389 4.8350 32 1 3.1333 -5.9065 6.9823 33 1 3.8686 -6.7047 5.5804 34 1 6.5302 -2.6150 5.3745 35 1 7.2723 -4.1638 4.8736 36 1 7.1172 -3.5390 2.6607 37 1 6.4213 -1.9684 3.1652 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530153540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:28 Heat of formation + Delta-G solvation = -100.554820 kcal Electronic energy + Delta-G solvation = -25154.786328 eV Core-core repulsion = 21408.710943 eV Total energy + Delta-G solvation = -3746.075385 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.72796 -39.93412 -38.02970 -37.60758 -36.64660 -36.39161 -36.15510 -32.75669 -32.21373 -30.98079 -30.27759 -26.38081 -26.05845 -24.78402 -23.77399 -22.76163 -20.39434 -19.92225 -19.83466 -18.60071 -18.36907 -17.77322 -17.66562 -17.30759 -16.50972 -16.18536 -16.02303 -15.93362 -15.66093 -15.24360 -15.15835 -14.57598 -14.13445 -13.92330 -13.77195 -13.48465 -13.44467 -13.18696 -13.06528 -12.96292 -12.94745 -12.85482 -12.78195 -12.48897 -12.32536 -12.12832 -12.04036 -11.80619 -11.56870 -11.52874 -11.26512 -10.11453 -9.77125 -9.08018 -8.24983 -5.82280 -0.39367 -0.11835 0.19296 1.18536 1.50656 1.54107 1.57429 1.59908 2.26961 2.42273 2.75552 3.02307 3.11675 3.21681 3.29894 3.44206 3.71018 3.80365 3.83087 3.94201 4.04329 4.10450 4.21566 4.26675 4.50986 4.58626 4.75441 4.80552 4.85307 4.88091 4.91602 5.02973 5.09316 5.11669 5.16816 5.24361 5.68085 5.71271 6.08447 6.61829 6.81307 7.03812 7.39443 8.93491 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.004670 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.187785 B = 5994.845062 C = 6707.659864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.018 4.018 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.310 4.310 8 H 0.109 0.891 9 N -0.979 5.979 10 S 2.679 3.321 11 O -0.996 6.996 12 O -1.009 7.009 13 C -0.693 4.693 14 C 0.018 3.982 15 C -0.155 4.155 16 C 0.164 3.836 17 C -0.135 4.135 18 C 0.001 3.999 19 C -0.070 4.070 20 C -0.131 4.131 21 C 0.530 3.470 22 O -0.551 6.551 23 N -0.564 5.564 24 C 0.102 3.898 25 C -0.080 4.080 26 H 0.269 0.731 27 H 0.406 0.594 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.390 -7.867 10.565 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.219 4.219 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.443 4.443 8 H 0.127 0.873 9 N -0.732 5.732 10 S 2.772 3.228 11 O -0.986 6.986 12 O -0.999 6.999 13 C -0.782 4.782 14 C -0.002 4.002 15 C -0.159 4.159 16 C 0.067 3.933 17 C -0.139 4.139 18 C -0.019 4.019 19 C -0.106 4.106 20 C -0.170 4.170 21 C 0.323 3.677 22 O -0.428 6.428 23 N -0.286 5.286 24 C -0.018 4.018 25 C -0.117 4.117 26 H 0.079 0.921 27 H 0.241 0.759 28 H 0.171 0.829 29 H 0.168 0.832 30 H 0.109 0.891 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.882 -8.390 10.716 16.819 hybrid contribution -0.089 1.240 0.418 1.312 sum 9.792 -7.150 11.134 16.461 Atomic orbital electron populations 1.69781 1.07143 1.28403 1.52149 1.25901 0.96308 1.02071 0.97592 0.85236 0.77899 0.77470 0.79364 1.19170 1.21167 1.18835 1.19399 0.92376 0.83533 1.49018 0.87334 1.51257 1.16634 1.19126 1.86183 1.02352 0.72653 0.72095 0.75693 1.93462 1.62080 1.87070 1.56023 1.93431 1.60722 1.57336 1.88418 1.31062 1.08742 1.15472 1.22888 1.20664 0.90945 0.91753 0.96810 1.19985 0.98678 1.04339 0.92925 1.19077 0.91881 0.95184 0.87196 1.19629 0.92466 1.04943 0.96869 1.20447 0.99396 0.92096 0.89979 1.20196 0.97739 1.02578 0.90128 1.21800 0.91788 0.98721 1.04720 1.21595 0.86310 0.78818 0.80962 1.90716 1.59889 1.64066 1.28108 1.46245 1.18059 1.51545 1.12752 1.22387 0.84984 0.97749 0.96724 1.21192 0.93329 1.03859 0.93326 0.92137 0.75941 0.82881 0.83220 0.89097 0.85886 0.85077 0.85952 0.89425 0.88313 0.86476 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.47 13.06 21.65 0.28 -50.19 16 2 C -0.02 -0.91 5.50 84.86 0.47 -0.44 16 3 Si 0.98 40.07 29.55 68.60 2.03 42.10 16 4 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.29 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.31 -15.40 9.63 84.03 0.81 -14.59 16 8 H 0.11 5.02 7.82 -2.91 -0.02 4.99 16 9 N -0.98 -46.35 5.75 -54.26 -0.31 -46.66 16 10 S 2.68 111.97 5.67 -56.49 -0.32 111.65 16 11 O -1.00 -45.71 16.94 -128.00 -2.17 -47.87 16 12 O -1.01 -44.16 17.15 -128.00 -2.20 -46.36 16 13 C -0.69 -24.43 5.91 22.60 0.13 -24.30 16 14 C 0.02 0.58 9.64 22.52 0.22 0.80 16 15 C -0.16 -4.20 6.26 -20.03 -0.13 -4.32 16 16 C 0.16 4.40 6.34 38.38 0.24 4.64 16 17 C -0.14 -3.52 5.79 -19.95 -0.12 -3.63 16 18 C 0.00 0.02 9.32 22.19 0.21 0.23 16 19 C -0.07 -1.22 6.08 29.50 0.18 -1.04 16 20 C -0.13 -2.11 5.97 29.85 0.18 -1.94 16 21 C 0.53 12.82 7.76 87.70 0.68 13.50 16 22 O -0.55 -16.60 17.79 -3.07 -0.05 -16.66 16 23 N -0.56 -13.64 3.17 -628.72 -1.99 -15.63 16 24 C 0.10 1.95 7.56 87.09 0.66 2.61 16 25 C -0.08 -1.49 6.91 30.20 0.21 -1.28 16 26 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 27 H 0.41 19.93 8.02 -96.75 -0.78 19.15 16 28 H 0.15 4.69 7.63 -2.91 -0.02 4.67 16 29 H 0.15 4.26 7.50 -2.91 -0.02 4.24 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.12 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -70.37 327.48 -0.64 -71.00 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.35 Total: 28.38 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 3.74 Total: -29.76 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -2.02 Total: -112.48 kcal Atomic # 8 Polarization: -106.47 SS G_CDS: -4.42 Total: -110.89 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Atomic # 16 Polarization: 111.97 SS G_CDS: -0.32 Total: 111.65 kcal Total: -70.37 -0.64 -71.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530153540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.551 kcal (2) G-P(sol) polarization free energy of solvation -70.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds