Wall clock time and date at job start Fri Apr 10 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42096 * 110.54278 * 2 1 4 4 O 1.42103 * 110.53746 * 223.25208 * 2 1 3 5 5 N 1.65598 * 104.45192 * 111.62928 * 2 1 3 6 6 C 1.46503 * 119.99839 * 64.99783 * 5 2 1 7 7 C 1.53004 * 109.46788 * 165.00148 * 6 5 2 8 8 N 1.46498 * 109.46779 * 179.97438 * 7 6 5 9 9 C 1.34772 * 120.00112 * 269.99641 * 8 7 6 10 10 O 1.21281 * 120.00009 * 185.94669 * 9 8 7 11 11 C 1.50694 * 120.00381 * 5.94990 * 9 8 7 12 12 S 1.80996 * 109.47765 * 180.02562 * 11 9 8 13 13 C 1.76193 * 100.00269 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00285 * 359.97438 * 13 12 11 15 15 C 1.38800 * 119.99958 * 179.97438 * 13 12 11 16 16 N 1.31627 * 120.00113 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00068 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46911 * 60.00396 * 17 15 13 19 19 H 1.48501 * 109.47023 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47056 * 300.00358 * 17 15 13 21 21 C 1.46502 * 119.99756 * 90.00656 * 8 7 6 22 22 C 1.53006 * 117.49673 * 196.33080 * 21 8 7 23 23 C 1.52999 * 117.50209 * 127.70812 * 21 8 7 24 24 H 1.09006 * 109.46969 * 308.37231 * 1 2 3 25 25 H 1.09001 * 109.47157 * 68.36967 * 1 2 3 26 26 H 1.09000 * 109.46989 * 188.37737 * 1 2 3 27 27 H 0.97001 * 119.99891 * 244.99414 * 5 2 1 28 28 H 1.08996 * 109.47281 * 45.00380 * 6 5 2 29 29 H 1.08997 * 109.47100 * 284.99515 * 6 5 2 30 30 H 1.08996 * 109.47020 * 60.00073 * 7 6 5 31 31 H 1.08998 * 109.47307 * 299.99589 * 7 6 5 32 32 H 1.09008 * 109.46992 * 300.03581 * 11 9 8 33 33 H 1.09000 * 109.47412 * 60.03145 * 11 9 8 34 34 H 0.96997 * 120.00272 * 179.97438 * 16 15 13 35 35 H 1.09003 * 115.55069 * 342.02702 * 21 8 7 36 36 H 1.08999 * 117.49692 * 359.97438 * 22 21 8 37 37 H 1.08993 * 117.49840 * 145.01526 * 22 21 8 38 38 H 1.08996 * 117.49635 * 214.97532 * 23 21 8 39 39 H 1.08994 * 117.49665 * 359.97256 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9118 5 7 2.2273 -0.5911 1.4907 6 6 1.8908 -1.9708 1.8506 7 6 2.6876 -2.3833 3.0899 8 7 2.3507 -3.7627 3.4502 9 6 1.3337 -4.0081 4.2998 10 8 1.1227 -5.1394 4.6825 11 6 0.4584 -2.8768 4.7742 12 16 -0.8063 -3.5221 5.8967 13 6 -1.6598 -2.0306 6.2859 14 1 -1.3374 -1.0952 5.8530 15 6 -2.7465 -2.0579 7.1490 16 7 -3.1391 -3.1978 7.6771 17 14 -3.6509 -0.4765 7.5622 18 1 -4.1965 0.1215 6.3173 19 1 -4.7646 -0.7734 8.4986 20 1 -2.7103 0.4796 8.1997 21 6 3.1195 -4.8754 2.8871 22 6 2.5079 -6.2749 2.9797 23 6 3.6986 -5.9002 3.8645 24 1 -0.3633 0.6380 0.8057 25 1 -0.3633 0.3788 -0.9553 26 1 -0.3633 -1.0167 0.1497 27 1 2.6922 -0.0238 2.1255 28 1 2.1394 -2.6335 1.0217 29 1 0.8243 -2.0407 2.0645 30 1 2.4390 -1.7206 3.9188 31 1 3.7541 -2.3134 2.8761 32 1 1.0683 -2.1408 5.2983 33 1 -0.0229 -2.4057 3.9172 34 1 -3.8983 -3.2168 8.2805 35 1 3.7057 -4.6399 1.9988 36 1 1.5339 -6.3677 3.4600 37 1 2.6918 -6.9602 2.1523 38 1 4.6657 -6.3390 3.6192 39 1 3.5080 -5.7462 4.9266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549741654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:32 Heat of formation + Delta-G solvation = -63.637592 kcal Electronic energy + Delta-G solvation = -23094.968913 eV Core-core repulsion = 19485.938331 eV Total energy + Delta-G solvation = -3609.030582 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.085 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.22093 -37.41626 -36.68291 -36.23388 -36.03376 -33.77303 -32.50689 -29.75950 -29.21090 -28.19519 -25.57425 -23.36764 -22.78062 -22.20252 -19.91548 -19.06806 -18.11193 -17.49117 -16.92682 -16.66366 -16.50627 -16.27050 -15.39224 -14.87843 -14.80924 -14.65058 -14.35864 -14.11284 -13.60151 -13.47191 -13.32507 -13.13526 -12.82881 -12.60890 -12.40537 -12.35399 -12.27037 -12.07440 -11.91321 -11.32212 -11.26209 -11.11113 -11.10776 -10.91443 -10.84339 -10.29909 -9.90421 -9.81710 -9.14663 -9.12997 -8.40695 -8.32235 -6.59049 -6.29191 -4.00726 -0.02845 2.29737 2.79557 2.83346 3.17011 3.18641 3.23199 3.46002 3.50231 3.91211 3.98362 4.12519 4.43363 4.52460 4.56303 4.68834 4.73097 4.93354 5.04720 5.07412 5.12721 5.14602 5.24174 5.38419 5.43076 5.46495 5.63936 5.70494 5.76456 5.83669 5.99697 6.15119 6.45126 6.61441 6.81063 7.39132 7.51072 8.26590 8.42797 9.16048 10.78058 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.009161 B = 0.004410 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.730790 B = 6346.993087 C = 8991.206717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.619 3.381 3 O -0.961 6.961 4 O -0.958 6.958 5 N -1.117 6.117 6 C 0.091 3.909 7 C 0.111 3.889 8 N -0.591 5.591 9 C 0.534 3.466 10 O -0.501 6.501 11 C -0.155 4.155 12 S -0.057 6.057 13 C -0.538 4.538 14 H 0.072 0.928 15 C 0.076 3.924 16 N -0.866 5.866 17 Si 0.917 3.083 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.274 1.274 21 C 0.068 3.932 22 C -0.191 4.191 23 C -0.187 4.187 24 H 0.132 0.868 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.419 0.581 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.270 0.730 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.404 3.996 -14.010 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.711 3.289 3 O -0.951 6.951 4 O -0.948 6.948 5 N -0.877 5.877 6 C -0.037 4.037 7 C -0.015 4.015 8 N -0.325 5.325 9 C 0.322 3.678 10 O -0.375 6.375 11 C -0.305 4.305 12 S 0.169 5.831 13 C -0.686 4.686 14 H 0.090 0.910 15 C -0.134 4.134 16 N -0.501 5.501 17 Si 0.744 3.256 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.037 4.037 22 C -0.228 4.228 23 C -0.225 4.225 24 H 0.151 0.849 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.254 0.746 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.157 0.843 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.442 2.370 -14.122 18.329 hybrid contribution -0.826 2.534 0.399 2.695 sum 10.616 4.904 -13.723 18.029 Atomic orbital electron populations 1.30519 1.27969 1.12115 1.11741 1.04580 0.77591 0.73696 0.73081 1.93622 1.78134 1.37692 1.85690 1.93616 1.77177 1.61855 1.62177 1.55457 1.74486 1.21129 1.36668 1.21873 1.00462 0.81680 0.99670 1.21633 1.00137 0.82927 0.96776 1.47273 1.33237 1.05365 1.46663 1.20413 0.79479 0.90443 0.77420 1.90558 1.69882 1.22778 1.54323 1.23656 1.02109 0.99872 1.04878 1.85428 1.30230 1.13222 1.54177 1.22797 1.17963 0.94235 1.33613 0.91022 1.24976 0.96223 0.97250 0.94959 1.69995 1.25822 1.25066 1.29256 0.86246 0.79011 0.81973 0.78410 1.19968 1.20759 1.19909 1.21670 0.99857 0.83582 0.98572 1.23846 1.01695 0.95183 1.02124 1.23238 0.97542 1.03240 0.98525 0.84912 0.85342 0.85152 0.74586 0.89527 0.90966 0.89004 0.89246 0.89214 0.89268 0.92048 0.85579 0.84295 0.89462 0.88985 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -4.04 10.89 101.05 1.10 -2.94 16 2 S 2.62 21.11 6.10 -107.50 -0.66 20.46 16 3 O -0.96 -10.89 18.08 -57.54 -1.04 -11.93 16 4 O -0.96 -11.01 17.50 -57.54 -1.01 -12.02 16 5 N -1.12 -7.82 5.89 -10.61 -0.06 -7.89 16 6 C 0.09 0.75 6.46 -4.04 -0.03 0.72 16 7 C 0.11 0.99 5.35 -4.04 -0.02 0.97 16 8 N -0.59 -7.40 2.84 -166.11 -0.47 -7.87 16 9 C 0.53 9.07 7.48 -10.99 -0.08 8.99 16 10 O -0.50 -10.17 11.61 5.56 0.06 -10.11 16 11 C -0.15 -2.83 4.85 36.00 0.17 -2.65 16 12 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 13 C -0.54 -14.53 9.50 30.94 0.29 -14.23 16 14 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 15 C 0.08 2.07 5.49 -17.43 -0.10 1.97 16 16 N -0.87 -25.26 13.22 55.49 0.73 -24.53 16 17 Si 0.92 20.58 29.55 -169.99 -5.02 15.55 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 C 0.07 0.78 6.61 -67.93 -0.45 0.33 16 22 C -0.19 -2.48 9.63 -26.73 -0.26 -2.74 16 23 C -0.19 -2.28 9.87 -26.73 -0.26 -2.54 16 24 H 0.13 0.72 8.14 -51.92 -0.42 0.29 16 25 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.13 0.72 8.14 -51.92 -0.42 0.30 16 27 H 0.42 2.30 8.62 -34.47 -0.30 2.00 16 28 H 0.09 0.72 7.69 -51.93 -0.40 0.32 16 29 H 0.07 0.61 6.90 -51.93 -0.36 0.25 16 30 H 0.09 0.79 6.48 -51.93 -0.34 0.46 16 31 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.09 1.51 7.23 -51.91 -0.38 1.13 16 33 H 0.09 1.46 6.90 -51.92 -0.36 1.10 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.14 2.31 5.21 -52.13 -0.27 2.04 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.46 7.60 -51.93 -0.39 1.06 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -37.14 352.47 -9.28 -46.42 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.29 Total: 2.39 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 0.37 Total: -12.12 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.20 Total: -40.29 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.98 Total: -34.06 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 19.65 SS G_CDS: -2.87 Total: 16.79 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.14 -9.28 -46.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549741654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.217 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds