Wall clock time and date at job start Fri Apr 10 2020 18:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86799 * 119.99588 * 2 1 4 4 H 1.48502 * 109.47173 * 272.50535 * 3 2 1 5 5 H 1.48500 * 109.47385 * 32.50570 * 3 2 1 6 6 H 1.48507 * 109.46911 * 152.50741 * 3 2 1 7 7 C 1.39950 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00017 * 347.57533 * 7 2 1 9 9 C 1.41068 * 119.99838 * 167.56591 * 7 2 1 10 10 C 1.40743 * 120.29444 * 328.81651 * 9 7 2 11 11 C 1.37542 * 119.80794 * 180.25465 * 10 9 7 12 12 Cl 1.73604 * 119.78550 * 179.76762 * 11 10 9 13 13 C 1.38997 * 120.42552 * 359.74403 * 11 10 9 14 14 C 1.38198 * 120.59991 * 359.97438 * 13 11 10 15 15 C 1.38596 * 120.17201 * 0.02562 * 14 13 11 16 16 N 1.39152 * 120.21256 * 179.97438 * 15 14 13 17 17 C 1.34781 * 119.99899 * 34.24902 * 16 15 14 18 18 O 1.21284 * 119.99703 * 355.56097 * 17 16 15 19 19 C 1.50693 * 120.00232 * 175.55740 * 17 16 15 20 20 H 1.09001 * 109.30243 * 319.58813 * 19 17 16 21 21 C 1.52922 * 109.29956 * 78.96417 * 19 17 16 22 22 C 1.53341 * 108.67707 * 171.06469 * 21 19 17 23 23 C 1.53068 * 108.42501 * 292.47100 * 22 21 19 24 24 C 1.50176 * 109.89281 * 48.90077 * 23 22 21 25 25 O 1.21277 * 118.24820 * 162.39657 * 24 23 22 26 26 N 1.33354 * 123.50526 * 342.41386 * 24 23 22 27 27 H 0.96998 * 120.00220 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.09571 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.70205 * 179.97438 * 13 11 10 30 30 H 1.08003 * 119.91068 * 179.97438 * 14 13 11 31 31 H 0.97004 * 120.00389 * 214.52548 * 16 15 14 32 32 H 1.09000 * 109.60395 * 290.82249 * 21 19 17 33 33 H 1.08998 * 109.60228 * 51.30738 * 21 19 17 34 34 H 1.09002 * 109.67429 * 172.73307 * 22 21 19 35 35 H 1.09004 * 109.70441 * 52.22331 * 22 21 19 36 36 H 1.08999 * 109.39985 * 288.76871 * 23 22 21 37 37 H 1.09007 * 109.39834 * 169.03056 * 23 22 21 38 38 H 0.96996 * 117.94298 * 182.20033 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4370 2.0771 -1.3988 5 1 1.4674 2.6368 0.7524 6 1 3.5656 1.4255 0.6464 7 6 2.0084 -1.2120 0.0005 8 1 1.4874 -2.1363 0.2022 9 6 3.3942 -1.2264 -0.2625 10 6 3.9638 -0.2681 -1.1217 11 6 5.3154 -0.2946 -1.3753 12 17 6.0163 0.8839 -2.4400 13 6 6.1237 -1.2586 -0.7843 14 6 5.5835 -2.2041 0.0667 15 6 4.2247 -2.2004 0.3396 16 7 3.6799 -3.1524 1.1959 17 6 4.3944 -3.6007 2.2471 18 8 5.5406 -3.2356 2.4012 19 6 3.7690 -4.5556 3.2310 20 1 2.7390 -4.2538 3.4210 21 6 3.7770 -5.9664 2.6410 22 6 3.3484 -6.9567 3.7305 23 6 4.4391 -6.9972 4.8036 24 6 4.8103 -5.5994 5.2080 25 8 5.4060 -5.4431 6.2528 26 7 4.5195 -4.5207 4.4799 27 1 -0.4850 0.8400 0.0004 28 1 3.3408 0.4836 -1.5835 29 1 7.1835 -1.2689 -0.9920 30 1 6.2219 -2.9484 0.5195 31 1 2.7874 -3.4963 1.0340 32 1 3.0790 -6.0174 1.8054 33 1 4.7815 -6.2132 2.2971 34 1 3.2237 -7.9487 3.2962 35 1 2.4082 -6.6300 4.1749 36 1 5.3184 -7.5051 4.4073 37 1 4.0706 -7.5402 5.6741 38 1 4.8265 -3.6587 4.8018 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571461645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:08 Heat of formation + Delta-G solvation = -67.976088 kcal Electronic energy + Delta-G solvation = -24578.891534 eV Core-core repulsion = 20832.185163 eV Total energy + Delta-G solvation = -3746.706371 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.087 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82881 -39.52957 -37.87218 -36.31362 -35.78208 -34.07190 -33.81701 -33.12760 -30.76924 -30.38761 -28.47848 -25.78263 -25.02647 -22.99633 -22.50098 -21.10480 -19.97268 -19.30239 -17.90452 -17.76662 -17.02351 -16.84054 -16.15614 -15.50197 -15.29372 -14.94867 -14.55697 -14.28018 -14.06275 -13.94871 -13.86758 -13.54735 -13.30854 -12.81057 -12.68612 -12.19654 -12.09711 -11.75969 -11.68471 -11.36594 -11.34227 -11.28210 -11.06432 -10.76507 -10.56465 -10.10653 -10.07115 -9.95679 -9.63845 -9.55005 -9.23524 -8.94024 -7.95336 -7.32720 -7.18820 -4.76791 1.99375 2.35775 2.54465 2.75590 2.93337 2.99610 3.06673 3.16747 3.18811 3.56069 3.80347 4.23368 4.35416 4.43796 4.50625 4.54300 4.91501 5.01272 5.05176 5.18862 5.43287 5.47946 5.55915 5.58448 5.82938 5.86727 5.98755 6.33480 6.34506 6.55382 6.67868 6.83489 6.99820 7.06799 7.23333 7.31740 7.34656 7.63876 7.85596 7.97285 8.13714 8.24191 8.44673 8.56007 9.81748 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.003845 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.854136 B = 7280.432717 C = 8345.714104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.087 3.913 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.442 4.442 8 H 0.094 0.906 9 C 0.095 3.905 10 C -0.222 4.222 11 C 0.014 3.986 12 Cl -0.115 7.115 13 C -0.218 4.218 14 C -0.065 4.065 15 C 0.033 3.967 16 N -0.631 5.631 17 C 0.491 3.509 18 O -0.526 6.526 19 C 0.126 3.874 20 H 0.102 0.898 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.137 4.137 24 C 0.524 3.476 25 O -0.560 6.560 26 N -0.696 5.696 27 H 0.289 0.711 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.408 0.592 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.257 -9.874 2.320 10.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.164 1.164 7 C -0.470 4.470 8 H 0.112 0.888 9 C 0.090 3.910 10 C -0.243 4.243 11 C -0.013 4.013 12 Cl -0.087 7.087 13 C -0.239 4.239 14 C -0.085 4.085 15 C -0.061 4.061 16 N -0.274 5.274 17 C 0.276 3.724 18 O -0.402 6.402 19 C 0.017 3.983 20 H 0.120 0.880 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.176 4.176 24 C 0.311 3.689 25 O -0.439 6.439 26 N -0.349 5.349 27 H 0.100 0.900 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.143 0.857 31 H 0.244 0.756 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.046 -9.578 2.857 10.202 hybrid contribution -0.158 1.252 -0.289 1.295 sum 1.888 -8.325 2.568 8.915 Atomic orbital electron populations 1.69625 1.07898 1.30721 1.34170 1.26082 0.94845 1.01634 0.90777 0.86408 0.81218 0.79707 0.79631 1.19037 1.21560 1.16439 1.19190 0.90735 0.95713 1.41370 0.88813 1.17386 0.93404 0.89574 0.90656 1.20777 0.92786 1.05290 1.05434 1.20655 0.93213 0.92158 0.95275 1.98282 1.85160 1.59233 1.66000 1.20197 0.98426 0.99587 1.05660 1.20702 0.93802 0.98161 0.95866 1.17569 0.92208 0.96894 0.99408 1.42792 1.19289 1.39883 1.25434 1.20650 0.87087 0.82508 0.82143 1.90705 1.17115 1.57930 1.74494 1.20880 0.96429 0.96509 0.84521 0.88027 1.21893 1.04188 0.91592 0.99069 1.21668 0.98481 1.00306 0.95456 1.21679 1.01076 0.93768 1.01110 1.20130 0.78223 0.87149 0.83420 1.90760 1.42174 1.86606 1.24324 1.45221 1.56430 1.10847 1.22393 0.90016 0.86630 0.87234 0.85707 0.75591 0.88731 0.90069 0.89879 0.90585 0.88110 0.88044 0.75710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.17 13.93 55.55 0.77 -18.39 16 2 C 0.09 2.05 5.47 -17.32 -0.09 1.95 16 3 Si 0.90 19.63 24.40 -169.99 -4.15 15.48 16 4 H -0.26 -5.65 6.66 56.52 0.38 -5.27 16 5 H -0.29 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.24 -5.51 6.69 56.52 0.38 -5.13 16 7 C -0.44 -10.18 9.13 -37.87 -0.35 -10.52 16 8 H 0.09 2.11 7.08 -52.49 -0.37 1.74 16 9 C 0.09 2.12 5.14 -106.65 -0.55 1.57 16 10 C -0.22 -5.00 6.76 -38.89 -0.26 -5.26 16 11 C 0.01 0.29 6.31 -39.55 -0.25 0.04 16 12 Cl -0.12 -2.16 28.94 -51.86 -1.50 -3.66 16 13 C -0.22 -4.43 9.82 -39.31 -0.39 -4.81 16 14 C -0.06 -1.32 8.68 -39.46 -0.34 -1.67 16 15 C 0.03 0.68 6.34 -83.18 -0.53 0.15 16 16 N -0.63 -10.42 5.02 -9.48 -0.05 -10.47 16 17 C 0.49 7.63 6.83 -10.99 -0.08 7.56 16 18 O -0.53 -10.09 13.76 5.55 0.08 -10.02 16 19 C 0.13 1.42 3.46 -69.53 -0.24 1.17 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.13 -1.08 5.29 -26.59 -0.14 -1.22 16 22 C -0.12 -0.81 6.03 -26.52 -0.16 -0.97 16 23 C -0.14 -1.18 6.03 -28.10 -0.17 -1.35 16 24 C 0.52 6.88 7.71 -11.87 -0.09 6.79 16 25 O -0.56 -9.68 17.78 5.56 0.10 -9.58 16 26 N -0.70 -8.98 4.79 -55.99 -0.27 -9.25 16 27 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 28 H 0.12 2.63 4.42 -52.49 -0.23 2.40 16 29 H 0.11 2.02 8.06 -52.49 -0.42 1.59 16 30 H 0.13 2.49 6.15 -52.48 -0.32 2.17 16 31 H 0.41 5.79 7.58 -40.82 -0.31 5.48 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.41 5.78 8.44 -40.82 -0.34 5.44 16 LS Contribution 329.05 15.07 4.96 4.96 Total: -1.00 -29.08 329.05 -7.83 -36.91 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.14 Total: 10.59 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -3.63 Total: -6.58 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.46 Total: -38.11 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.18 Total: -19.60 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.15 Total: 15.48 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -1.50 Total: -3.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.08 -7.83 -36.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571461645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.063 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds