Wall clock time and date at job start Fri Apr 10 2020 18:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99751 * 2 1 4 4 H 1.48496 * 109.47496 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47264 * 300.00088 * 3 2 1 6 6 H 1.48509 * 109.46833 * 59.99938 * 3 2 1 7 7 C 1.37874 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99883 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00266 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47260 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.45907 * 184.99788 * 10 9 7 12 12 C 1.53191 * 109.31258 * 178.61438 * 11 10 9 13 13 N 1.46925 * 108.77597 * 54.63272 * 12 11 10 14 14 C 1.34774 * 120.62982 * 126.36659 * 13 12 11 15 15 O 1.21287 * 119.99861 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00245 * 180.02562 * 14 13 12 17 17 H 1.08999 * 109.10573 * 301.53662 * 16 14 13 18 18 C 1.53513 * 109.11059 * 60.61105 * 16 14 13 19 19 N 1.44567 * 109.41765 * 125.09668 * 18 16 14 20 20 C 1.46924 * 110.58636 * 55.49829 * 19 18 16 21 21 C 1.52839 * 109.52655 * 294.65802 * 20 19 18 22 22 N 1.43339 * 109.11720 * 182.39950 * 16 14 13 23 23 C 1.44140 * 119.24294 * 313.65742 * 22 16 14 24 24 C 1.53243 * 110.21318 * 262.09007 * 23 22 16 25 25 C 1.43882 * 117.16965 * 281.61853 * 19 18 16 26 26 C 1.46924 * 118.73901 * 306.64605 * 13 12 11 27 27 C 1.52765 * 109.00926 * 53.30839 * 26 13 12 28 28 H 0.96996 * 120.00786 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47207 * 59.99736 * 9 7 2 30 30 H 1.09001 * 109.46641 * 299.99877 * 9 7 2 31 31 H 1.08998 * 109.46014 * 304.96640 * 10 9 7 32 32 H 1.08997 * 109.49506 * 58.65854 * 11 10 9 33 33 H 1.09002 * 109.49768 * 298.57032 * 11 10 9 34 34 H 1.08996 * 109.58319 * 294.84751 * 12 11 10 35 35 H 1.08995 * 109.58559 * 174.41980 * 12 11 10 36 36 H 1.08998 * 109.48540 * 5.10837 * 18 16 14 37 37 H 1.09010 * 109.47510 * 245.08062 * 18 16 14 38 38 H 1.08993 * 109.46730 * 54.67654 * 20 19 18 39 39 H 1.09002 * 109.45983 * 174.64612 * 20 19 18 40 40 H 1.09003 * 109.40999 * 252.44340 * 21 20 19 41 41 H 1.09003 * 109.34275 * 132.64361 * 21 20 19 42 42 H 1.08994 * 109.34751 * 141.86177 * 23 22 16 43 43 H 1.08998 * 109.34892 * 22.31538 * 23 22 16 44 44 H 1.09001 * 110.02089 * 302.33516 * 24 23 22 45 45 H 1.08997 * 110.10115 * 180.93639 * 24 23 22 46 46 H 1.09003 * 108.80073 * 217.71304 * 25 19 18 47 47 H 1.08995 * 108.80445 * 335.96698 * 25 19 18 48 48 H 1.09000 * 109.58666 * 173.13698 * 26 13 12 49 49 H 1.08999 * 109.58934 * 293.56718 * 26 13 12 50 50 H 1.09000 * 109.56100 * 185.55153 * 27 26 13 51 51 H 1.08999 * 109.38429 * 65.51699 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0005 11 6 1.4843 -4.9837 -0.1252 12 6 2.4848 -6.1433 -0.1597 13 7 3.3509 -6.0560 1.0239 14 6 3.4922 -7.1108 1.8508 15 8 2.9016 -8.1449 1.6208 16 6 4.3838 -7.0054 3.0612 17 1 5.3944 -6.7545 2.7391 18 6 3.8582 -5.8913 3.9772 19 7 3.6386 -6.4230 5.3034 20 6 4.8652 -7.0450 5.8203 21 6 5.2155 -8.2666 4.9711 22 7 4.4070 -8.2685 3.7386 23 6 3.1662 -8.9616 3.9787 24 6 2.6781 -8.6943 5.4065 25 6 2.4416 -7.1935 5.5124 26 6 4.0553 -4.7948 1.2923 27 6 3.0415 -3.6521 1.3075 28 1 -0.4851 0.8399 -0.0004 29 1 0.6249 -2.5571 -0.8896 30 1 0.6243 -2.5567 0.8903 31 1 2.9292 -3.5552 -0.8417 32 1 0.8992 -4.9805 -1.0448 33 1 0.8186 -5.1029 0.7296 34 1 3.0918 -6.0754 -1.0624 35 1 1.9463 -7.0909 -0.1493 36 1 2.9191 -5.5065 3.5796 37 1 4.5902 -5.0849 4.0254 38 1 5.6832 -6.3260 5.7769 39 1 4.7080 -7.3542 6.8537 40 1 5.0110 -9.1738 5.5397 41 1 6.2733 -8.2336 4.7101 42 1 3.3187 -10.0323 3.8437 43 1 2.4152 -8.6139 3.2693 44 1 3.4374 -9.0040 6.1246 45 1 1.7484 -9.2324 5.5915 46 1 2.0479 -6.9689 6.5037 47 1 1.7011 -6.9010 4.7681 48 1 4.5527 -4.8530 2.2605 49 1 4.7930 -4.6147 0.5104 50 1 3.5649 -2.7013 1.4077 51 1 2.3612 -3.7833 2.1490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576586201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:22 Heat of formation + Delta-G solvation = 0.770885 kcal Electronic energy + Delta-G solvation = -29603.171663 eV Core-core repulsion = 25923.955165 eV Total energy + Delta-G solvation = -3679.216498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.80523 -39.54645 -37.40631 -34.57722 -34.12106 -33.39573 -32.16157 -31.62245 -30.48021 -28.18990 -26.27610 -25.90951 -24.76944 -23.94963 -22.88878 -22.00444 -20.82470 -20.03497 -19.47416 -18.42211 -17.34007 -17.29278 -16.56793 -16.31168 -15.56377 -15.29460 -15.08045 -14.57932 -14.40288 -13.96284 -13.84799 -13.60472 -13.51184 -13.13128 -13.11327 -12.94372 -12.82462 -12.53166 -12.27545 -12.25986 -11.93102 -11.81430 -11.58794 -11.38690 -11.21445 -11.04082 -10.95890 -10.76924 -10.74383 -10.73691 -10.43224 -10.12998 -9.71511 -9.32580 -9.29082 -8.98997 -8.79782 -8.39425 -8.36349 -7.80081 -6.02696 -4.04916 2.62270 2.95847 3.28159 3.36409 3.38794 3.47965 3.95557 4.31746 4.42796 4.54601 4.60961 4.68244 4.79670 4.93448 5.06224 5.12156 5.21359 5.32231 5.34729 5.35451 5.38897 5.43168 5.44507 5.48747 5.53902 5.58145 5.64097 5.65115 5.71816 5.75318 5.81161 5.89436 5.95211 6.01201 6.15121 6.33193 6.35131 6.46428 6.62979 6.79200 6.91723 6.94861 7.06126 7.07171 7.15187 7.24226 7.54741 7.63818 7.77734 7.96711 8.22932 8.38813 9.01791 9.59282 11.08561 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.018882 B = 0.003349 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.501730 B = 8359.635633 C = 8977.560203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.080 4.080 11 C -0.129 4.129 12 C 0.113 3.887 13 N -0.601 5.601 14 C 0.517 3.483 15 O -0.536 6.536 16 C 0.065 3.935 17 H 0.104 0.896 18 C 0.046 3.954 19 N -0.568 5.568 20 C 0.039 3.961 21 C 0.035 3.965 22 N -0.557 5.557 23 C 0.058 3.942 24 C -0.189 4.189 25 C 0.079 3.921 26 C 0.095 3.905 27 C -0.118 4.118 28 H 0.259 0.741 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.086 0.914 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 -15.962 10.062 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.099 4.099 11 C -0.167 4.167 12 C -0.009 4.009 13 N -0.334 5.334 14 C 0.305 3.695 15 O -0.414 6.414 16 C -0.049 4.049 17 H 0.122 0.878 18 C -0.085 4.085 19 N -0.290 5.290 20 C -0.090 4.090 21 C -0.094 4.094 22 N -0.279 5.279 23 C -0.069 4.069 24 C -0.230 4.230 25 C -0.049 4.049 26 C -0.028 4.028 27 C -0.156 4.156 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.553 -16.276 9.855 21.290 hybrid contribution 0.156 0.940 0.015 0.953 sum 9.708 -15.336 9.870 20.661 Atomic orbital electron populations 1.69968 1.06067 1.26456 1.50937 1.25020 0.94783 0.99195 0.95435 0.86601 0.80122 0.84083 0.77572 1.19734 1.21103 1.21087 1.21262 0.92943 0.90911 1.50313 0.92532 1.19124 0.93598 0.91041 0.97192 1.21188 0.97993 0.94627 0.96080 1.22026 0.97593 0.94858 1.02222 1.21671 0.92543 1.00253 0.86443 1.48153 1.46640 1.12698 1.25919 1.20448 0.82010 0.83128 0.83901 1.90556 1.48603 1.29013 1.73211 1.21437 1.00437 0.89984 0.93055 0.87797 1.22644 1.02985 0.96058 0.86763 1.57593 1.03356 1.44854 1.23180 1.22478 0.91684 0.95928 0.98871 1.22740 0.97818 0.99089 0.89743 1.56971 1.20777 1.23278 1.26872 1.22003 0.91193 0.98564 0.95094 1.23055 1.02428 0.97865 0.99604 1.21242 0.90807 0.90796 1.02080 1.22066 0.95525 0.83675 1.01495 1.21826 0.97570 0.97154 0.99083 0.93087 0.96624 0.96658 0.92299 0.91103 0.92209 0.91729 0.89753 0.89850 0.89137 0.90376 0.90541 0.90152 0.90971 0.91555 0.87660 0.91031 0.90640 0.91342 0.91649 0.90043 0.91367 0.89526 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -13.68 8.39 -34.44 -0.29 -13.97 16 8 H 0.06 1.44 7.06 -52.48 -0.37 1.07 16 9 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 10 C -0.08 -1.49 2.10 -90.58 -0.19 -1.68 16 11 C -0.13 -2.10 5.36 -26.61 -0.14 -2.24 16 12 C 0.11 1.64 6.43 -3.71 -0.02 1.61 16 13 N -0.60 -8.37 2.94 -173.03 -0.51 -8.88 16 14 C 0.52 7.46 6.51 -10.98 -0.07 7.39 16 15 O -0.54 -9.18 12.69 5.55 0.07 -9.11 16 16 C 0.07 0.77 2.08 -70.48 -0.15 0.62 16 17 H 0.10 1.11 7.87 -51.93 -0.41 0.70 16 18 C 0.05 0.52 4.05 -4.81 -0.02 0.50 16 19 N -0.57 -6.18 4.37 -239.26 -1.05 -7.23 16 20 C 0.04 0.34 5.51 -3.89 -0.02 0.32 16 21 C 0.03 0.31 5.71 -3.63 -0.02 0.29 16 22 N -0.56 -6.55 4.12 -232.24 -0.96 -7.51 16 23 C 0.06 0.71 4.97 -5.17 -0.03 0.68 16 24 C -0.19 -1.86 5.76 -26.97 -0.16 -2.01 16 25 C 0.08 0.85 5.74 -5.79 -0.03 0.82 16 26 C 0.09 1.21 5.57 -3.93 -0.02 1.18 16 27 C -0.12 -1.92 5.17 -26.83 -0.14 -2.06 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.27 7.00 -51.93 -0.36 0.91 16 36 H 0.08 1.10 6.45 -51.93 -0.33 0.76 16 37 H 0.09 0.91 7.11 -51.92 -0.37 0.54 16 38 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 39 H 0.08 0.60 7.90 -51.93 -0.41 0.19 16 40 H 0.08 0.67 6.21 -51.93 -0.32 0.35 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.11 1.58 4.90 -52.12 -0.26 1.32 16 44 H 0.07 0.63 5.29 -51.93 -0.27 0.36 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.81 7.64 -51.93 -0.40 0.42 16 48 H 0.08 0.86 3.97 -51.93 -0.21 0.66 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 51 H 0.06 0.99 7.80 -51.93 -0.40 0.59 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -30.39 363.64 -11.45 -41.85 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.68 Total: 1.52 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.52 Total: -6.52 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -1.78 Total: -49.15 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.39 -11.45 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576586201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.617 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds