Wall clock time and date at job start Fri Apr 10 2020 18:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99751 * 2 1 4 4 H 1.48496 * 109.47496 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47264 * 300.00088 * 3 2 1 6 6 H 1.48509 * 109.46833 * 59.99938 * 3 2 1 7 7 C 1.37874 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99883 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00266 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47260 * 179.97438 * 9 7 2 11 11 C 1.53045 * 109.45907 * 184.99788 * 10 9 7 12 12 C 1.53191 * 109.31258 * 178.61438 * 11 10 9 13 13 N 1.46925 * 108.77597 * 54.63272 * 12 11 10 14 14 C 1.34774 * 120.62982 * 126.36659 * 13 12 11 15 15 O 1.21287 * 119.99861 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00245 * 180.02562 * 14 13 12 17 17 H 1.08999 * 109.10573 * 301.53662 * 16 14 13 18 18 C 1.53513 * 109.11059 * 60.61105 * 16 14 13 19 19 N 1.44567 * 109.41765 * 125.09668 * 18 16 14 20 20 C 1.46924 * 110.58636 * 55.49829 * 19 18 16 21 21 C 1.52839 * 109.52655 * 294.65802 * 20 19 18 22 22 N 1.43339 * 109.11720 * 182.39950 * 16 14 13 23 23 C 1.44140 * 119.24294 * 313.65742 * 22 16 14 24 24 C 1.53243 * 110.21318 * 262.09007 * 23 22 16 25 25 C 1.43882 * 117.16965 * 281.61853 * 19 18 16 26 26 C 1.46924 * 118.73901 * 306.64605 * 13 12 11 27 27 C 1.52765 * 109.00926 * 53.30839 * 26 13 12 28 28 H 0.96996 * 120.00786 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47207 * 59.99736 * 9 7 2 30 30 H 1.09001 * 109.46641 * 299.99877 * 9 7 2 31 31 H 1.08998 * 109.46014 * 304.96640 * 10 9 7 32 32 H 1.08997 * 109.49506 * 58.65854 * 11 10 9 33 33 H 1.09002 * 109.49768 * 298.57032 * 11 10 9 34 34 H 1.08996 * 109.58319 * 294.84751 * 12 11 10 35 35 H 1.08995 * 109.58559 * 174.41980 * 12 11 10 36 36 H 1.08998 * 109.48540 * 5.10837 * 18 16 14 37 37 H 1.09010 * 109.47510 * 245.08062 * 18 16 14 38 38 H 1.08993 * 109.46730 * 54.67654 * 20 19 18 39 39 H 1.09002 * 109.45983 * 174.64612 * 20 19 18 40 40 H 1.09003 * 109.40999 * 252.44340 * 21 20 19 41 41 H 1.09003 * 109.34275 * 132.64361 * 21 20 19 42 42 H 1.08994 * 109.34751 * 141.86177 * 23 22 16 43 43 H 1.08998 * 109.34892 * 22.31538 * 23 22 16 44 44 H 1.09001 * 110.02089 * 302.33516 * 24 23 22 45 45 H 1.08997 * 110.10115 * 180.93639 * 24 23 22 46 46 H 1.09003 * 108.80073 * 217.71304 * 25 19 18 47 47 H 1.08995 * 108.80445 * 335.96698 * 25 19 18 48 48 H 1.09000 * 109.58666 * 173.13698 * 26 13 12 49 49 H 1.08999 * 109.58934 * 293.56718 * 26 13 12 50 50 H 1.09000 * 109.56100 * 185.55153 * 27 26 13 51 51 H 1.08999 * 109.38429 * 65.51699 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0005 11 6 1.4843 -4.9837 -0.1252 12 6 2.4848 -6.1433 -0.1597 13 7 3.3509 -6.0560 1.0239 14 6 3.4922 -7.1108 1.8508 15 8 2.9016 -8.1449 1.6208 16 6 4.3838 -7.0054 3.0612 17 1 5.3944 -6.7545 2.7391 18 6 3.8582 -5.8913 3.9772 19 7 3.6386 -6.4230 5.3034 20 6 4.8652 -7.0450 5.8203 21 6 5.2155 -8.2666 4.9711 22 7 4.4070 -8.2685 3.7386 23 6 3.1662 -8.9616 3.9787 24 6 2.6781 -8.6943 5.4065 25 6 2.4416 -7.1935 5.5124 26 6 4.0553 -4.7948 1.2923 27 6 3.0415 -3.6521 1.3075 28 1 -0.4851 0.8399 -0.0004 29 1 0.6249 -2.5571 -0.8896 30 1 0.6243 -2.5567 0.8903 31 1 2.9292 -3.5552 -0.8417 32 1 0.8992 -4.9805 -1.0448 33 1 0.8186 -5.1029 0.7296 34 1 3.0918 -6.0754 -1.0624 35 1 1.9463 -7.0909 -0.1493 36 1 2.9191 -5.5065 3.5796 37 1 4.5902 -5.0849 4.0254 38 1 5.6832 -6.3260 5.7769 39 1 4.7080 -7.3542 6.8537 40 1 5.0110 -9.1738 5.5397 41 1 6.2733 -8.2336 4.7101 42 1 3.3187 -10.0323 3.8437 43 1 2.4152 -8.6139 3.2693 44 1 3.4374 -9.0040 6.1246 45 1 1.7484 -9.2324 5.5915 46 1 2.0479 -6.9689 6.5037 47 1 1.7011 -6.9010 4.7681 48 1 4.5527 -4.8530 2.2605 49 1 4.7930 -4.6147 0.5104 50 1 3.5649 -2.7013 1.4077 51 1 2.3612 -3.7833 2.1490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576586201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:21 Heat of formation + Delta-G solvation = -19.379141 kcal Electronic energy + Delta-G solvation = -29604.045433 eV Core-core repulsion = 25923.955165 eV Total energy + Delta-G solvation = -3680.090269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.72098 -40.65146 -38.70899 -35.91423 -35.14791 -34.64606 -33.73947 -32.62349 -31.56323 -29.88133 -27.34017 -26.79600 -26.19101 -24.96182 -24.14734 -23.48432 -21.90746 -21.19580 -20.54629 -19.55302 -18.43474 -18.32767 -18.14415 -17.45959 -16.69355 -16.52890 -16.22284 -16.11084 -15.39235 -15.27681 -15.01646 -14.71137 -14.61691 -14.47865 -14.29372 -13.96517 -13.85453 -13.79624 -13.51400 -13.28418 -13.13912 -13.00006 -12.78520 -12.67359 -12.54547 -12.48967 -12.31586 -12.29766 -12.01656 -11.86167 -11.68274 -11.43945 -11.33252 -11.01343 -10.84141 -10.51809 -10.41436 -9.67978 -9.56416 -8.62691 -8.15022 -6.24543 1.42476 1.43617 1.51519 1.55635 1.89774 2.44188 2.64283 3.12065 3.19251 3.32051 3.73953 3.74219 3.85255 3.90109 3.98268 4.02663 4.12226 4.19323 4.19948 4.33442 4.35804 4.40389 4.48536 4.55500 4.59568 4.65474 4.71455 4.77227 4.78305 4.83218 4.88527 4.90033 4.94830 4.97504 5.03508 5.07603 5.09795 5.19235 5.31105 5.32843 5.41304 5.55463 5.60647 5.82302 5.90532 5.99823 6.21658 6.28044 6.30922 6.36082 6.51165 6.92776 7.11744 7.44615 8.97248 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.018882 B = 0.003349 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.501730 B = 8359.635633 C = 8977.560203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.004 4.004 3 Si 0.959 3.041 4 H -0.255 1.255 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.070 0.930 9 C 0.032 3.968 10 C -0.072 4.072 11 C -0.120 4.120 12 C 0.121 3.879 13 N -0.603 5.603 14 C 0.512 3.488 15 O -0.567 6.567 16 C 0.072 3.928 17 H 0.125 0.875 18 C 0.050 3.950 19 N -0.577 5.577 20 C 0.041 3.959 21 C 0.037 3.963 22 N -0.570 5.570 23 C 0.063 3.937 24 C -0.178 4.178 25 C 0.080 3.920 26 C 0.105 3.895 27 C -0.111 4.111 28 H 0.260 0.740 29 H -0.016 1.016 30 H -0.017 1.017 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.109 0.891 49 H 0.088 0.912 50 H 0.079 0.921 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.328 -16.113 11.298 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.178 1.178 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.088 0.912 9 C -0.005 4.005 10 C -0.091 4.091 11 C -0.159 4.159 12 C -0.002 4.002 13 N -0.335 5.335 14 C 0.301 3.699 15 O -0.447 6.447 16 C -0.042 4.042 17 H 0.143 0.857 18 C -0.080 4.080 19 N -0.299 5.299 20 C -0.087 4.087 21 C -0.091 4.091 22 N -0.293 5.293 23 C -0.065 4.065 24 C -0.218 4.218 25 C -0.048 4.048 26 C -0.017 4.017 27 C -0.149 4.149 28 H 0.069 0.931 29 H 0.002 0.998 30 H 0.001 0.999 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.057 0.943 48 H 0.127 0.873 49 H 0.106 0.894 50 H 0.098 0.902 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.974 -16.433 11.102 23.698 hybrid contribution -0.991 0.954 -0.373 1.425 sum 11.983 -15.479 10.728 22.322 Atomic orbital electron populations 1.70121 1.07982 1.27395 1.52502 1.25969 0.95589 1.03317 0.95216 0.85476 0.79562 0.79174 0.77317 1.17806 1.21068 1.20946 1.21698 0.93706 0.91644 1.49069 0.91205 1.19020 0.94057 0.93318 0.94081 1.21033 0.97024 0.93195 0.97849 1.21896 0.97736 0.94768 1.01460 1.21531 0.92396 0.98617 0.87637 1.48219 1.46490 1.13174 1.25630 1.21026 0.81902 0.82576 0.84364 1.90558 1.49869 1.30332 1.73968 1.21471 1.00569 0.90340 0.91791 0.85703 1.22602 1.02153 0.96340 0.86937 1.57661 1.04172 1.45269 1.22800 1.22582 0.90904 0.95998 0.99261 1.22832 0.98035 0.99611 0.88658 1.57011 1.20669 1.23209 1.28411 1.21829 0.90865 0.98142 0.95631 1.22972 1.03148 0.97178 0.98500 1.21211 0.90590 0.91453 1.01567 1.22061 0.94394 0.81432 1.03793 1.21690 0.97797 0.98547 0.96888 0.93133 0.99780 0.99889 0.91694 0.91184 0.93951 0.89941 0.90458 0.92450 0.87181 0.88971 0.89291 0.89393 0.89494 0.92138 0.90896 0.89199 0.90144 0.90541 0.94300 0.87339 0.89429 0.90239 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.77 13.29 21.45 0.28 -56.49 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 4 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.52 -28.01 8.39 25.60 0.21 -27.79 16 8 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 9 C 0.03 1.63 4.45 29.85 0.13 1.77 16 10 C -0.07 -2.72 2.10 -10.77 -0.02 -2.74 16 11 C -0.12 -4.04 5.36 30.67 0.16 -3.87 16 12 C 0.12 3.45 6.43 86.36 0.56 4.00 16 13 N -0.60 -16.13 2.94 -819.74 -2.41 -18.54 16 14 C 0.51 14.38 6.51 87.66 0.57 14.95 16 15 O -0.57 -19.66 12.69 -3.05 -0.04 -19.70 16 16 C 0.07 1.55 2.08 45.00 0.09 1.65 16 17 H 0.13 2.19 7.87 -2.39 -0.02 2.17 16 18 C 0.05 1.04 4.05 86.91 0.35 1.39 16 19 N -0.58 -11.39 4.37 -910.88 -3.98 -15.37 16 20 C 0.04 0.57 5.51 86.25 0.47 1.04 16 21 C 0.04 0.54 5.71 86.15 0.49 1.03 16 22 N -0.57 -12.31 4.12 -888.67 -3.67 -15.98 16 23 C 0.06 1.49 4.97 86.90 0.43 1.92 16 24 C -0.18 -3.26 5.76 30.44 0.18 -3.08 16 25 C 0.08 1.66 5.74 86.63 0.50 2.16 16 26 C 0.10 2.43 5.57 86.22 0.48 2.91 16 27 C -0.11 -3.53 5.17 30.53 0.16 -3.38 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.08 2.35 7.00 -2.39 -0.02 2.34 16 36 H 0.06 1.50 6.45 -2.39 -0.02 1.48 16 37 H 0.11 1.83 7.11 -2.38 -0.02 1.81 16 38 H 0.09 1.06 8.12 -2.39 -0.02 1.04 16 39 H 0.09 1.05 7.90 -2.39 -0.02 1.03 16 40 H 0.09 1.16 6.21 -2.39 -0.01 1.15 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 2.25 4.90 -5.42 -0.03 2.23 16 44 H 0.09 1.34 5.29 -2.39 -0.01 1.33 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.04 1.00 7.64 -2.39 -0.02 0.98 16 48 H 0.11 1.95 3.97 -2.39 -0.01 1.94 16 49 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 50 H 0.08 2.66 6.91 -2.39 -0.02 2.64 16 51 H 0.04 1.51 7.80 -2.39 -0.02 1.50 16 Total: -1.00 -68.29 363.64 -1.66 -69.94 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.89 Total: 18.94 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.23 Total: -7.79 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -9.77 Total: -106.37 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.04 Total: -19.70 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -68.29 -1.66 -69.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576586201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.564 kcal (2) G-P(sol) polarization free energy of solvation -68.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds