Wall clock time and date at job start Fri Apr 10 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30886 * 125.89314 * 2 1 4 4 C 1.33660 * 109.77030 * 179.97438 * 3 2 1 5 5 N 1.39603 * 125.60943 * 179.97438 * 4 3 2 6 6 S 1.65603 * 119.99819 * 165.00292 * 5 4 3 7 7 O 1.42100 * 106.39957 * 178.53920 * 6 5 4 8 8 O 1.42099 * 106.39988 * 311.45990 * 6 5 4 9 9 C 1.76194 * 107.21905 * 64.99850 * 6 5 4 10 10 C 1.38655 * 119.87545 * 269.73106 * 9 6 5 11 11 C 1.38620 * 120.49952 * 179.72328 * 10 9 6 12 12 C 1.37638 * 120.24985 * 0.54829 * 11 10 9 13 13 C 1.40700 * 119.74263 * 359.72720 * 12 11 10 14 14 C 1.41394 * 120.24613 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00567 * 150.21714 * 14 13 12 16 16 C 1.39946 * 119.99624 * 330.22006 * 14 13 12 17 17 N 1.30828 * 119.99754 * 161.72763 * 16 14 13 18 18 Si 1.86801 * 120.00172 * 341.72193 * 16 14 13 19 19 H 1.48503 * 109.46891 * 95.41460 * 18 16 14 20 20 H 1.48501 * 109.47452 * 215.41584 * 18 16 14 21 21 H 1.48501 * 109.47008 * 335.41669 * 18 16 14 22 22 C 1.37602 * 119.87511 * 90.00211 * 9 6 5 23 23 N 1.31197 * 108.77570 * 359.71786 * 4 3 2 24 24 N 1.34343 * 125.89437 * 179.97438 * 2 1 3 25 25 C 1.46496 * 126.75880 * 0.02562 * 24 2 1 26 26 H 1.09005 * 109.46967 * 270.02368 * 1 2 3 27 27 H 1.09001 * 109.47201 * 30.02020 * 1 2 3 28 28 H 1.08994 * 109.47437 * 150.02707 * 1 2 3 29 29 H 0.96998 * 120.00186 * 344.99888 * 5 4 3 30 30 H 1.07996 * 119.75460 * 359.97438 * 10 9 6 31 31 H 1.08005 * 119.87452 * 180.25364 * 11 10 9 32 32 H 1.08001 * 120.13144 * 179.74775 * 12 11 10 33 33 H 0.97001 * 119.99502 * 179.97438 * 17 16 14 34 34 H 1.07994 * 120.12485 * 359.97438 * 22 9 6 35 35 H 1.08995 * 109.47412 * 90.00357 * 25 24 2 36 36 H 1.09009 * 109.46614 * 210.00104 * 25 24 2 37 37 H 1.08995 * 109.47213 * 329.99597 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0603 0.0000 4 6 3.5583 0.6892 0.0006 5 7 4.6544 1.5538 0.0002 6 16 6.1624 0.9792 0.3721 7 8 7.0523 2.0804 0.2516 8 8 6.0200 0.2219 1.5661 9 6 6.6112 -0.1639 -0.8914 10 6 6.2955 -1.5068 -0.7518 11 6 6.6374 -2.4163 -1.7404 12 6 7.3052 -1.9962 -2.8682 13 6 7.6358 -0.6368 -3.0180 14 6 8.3213 -0.1935 -4.1724 15 1 8.1681 0.8106 -4.5392 16 6 9.1982 -1.0561 -4.8398 17 7 9.5535 -0.8020 -6.0730 18 14 9.8617 -2.5701 -3.9698 19 1 9.0218 -3.7459 -4.3127 20 1 11.2602 -2.8174 -4.4037 21 1 9.8304 -2.3508 -2.5014 22 6 7.2786 0.2786 -2.0104 23 7 3.6191 -0.6214 0.0070 24 7 2.2946 -1.0883 0.0005 25 6 1.8578 -2.4866 0.0006 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5134 29 1 4.5327 2.4910 -0.2179 30 1 5.7758 -1.8461 0.1320 31 1 6.3829 -3.4594 -1.6231 32 1 7.5742 -2.7072 -3.6354 33 1 10.1616 -1.3997 -6.5355 34 1 7.5270 1.3243 -2.1152 35 1 1.7499 -2.8337 -1.0270 36 1 2.5989 -3.0987 0.5149 37 1 0.8999 -2.5680 0.5141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589980347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:26 Heat of formation + Delta-G solvation = 20.197339 kcal Electronic energy + Delta-G solvation = -24942.327668 eV Core-core repulsion = 21233.781240 eV Total energy + Delta-G solvation = -3708.546427 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.18080 -39.72050 -38.53793 -37.19001 -36.96909 -35.64675 -34.20529 -33.14749 -32.55130 -31.94563 -29.44141 -27.33741 -27.16712 -24.18793 -23.23567 -22.71982 -22.00121 -20.59944 -19.75790 -19.06869 -18.48578 -18.06942 -17.39120 -17.05568 -16.94041 -16.72222 -16.34752 -15.63760 -15.12823 -14.89384 -14.70223 -14.47530 -14.24566 -14.07317 -13.94218 -13.69715 -13.59554 -13.45227 -13.39712 -13.26242 -13.12836 -12.90630 -12.58752 -12.53454 -12.47849 -12.02721 -11.79523 -11.56247 -11.13517 -11.05680 -10.78763 -10.05917 -9.92307 -9.68118 -8.96966 -6.59877 -0.92690 0.12205 0.56400 0.65194 1.16365 1.19873 1.35525 1.42812 1.70312 1.82522 2.05010 2.35006 2.56377 3.05636 3.21212 3.34529 3.38129 3.95485 4.14647 4.30331 4.31727 4.43545 4.48513 4.71696 4.72453 4.73583 4.78550 4.82460 5.04420 5.04903 5.16588 5.20831 5.30521 5.43706 5.59954 5.67685 5.73263 5.96342 5.96992 6.22082 6.56353 6.68539 6.96809 8.11605 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.016393 B = 0.004380 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.660432 B = 6391.236911 C = 7102.284855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.296 3.704 3 N -0.580 5.580 4 C 0.444 3.556 5 N -0.999 5.999 6 S 2.719 3.281 7 O -0.968 6.968 8 O -0.961 6.961 9 C -0.632 4.632 10 C -0.104 4.104 11 C -0.100 4.100 12 C -0.194 4.194 13 C 0.053 3.947 14 C -0.486 4.486 15 H 0.060 0.940 16 C 0.050 3.950 17 N -0.843 5.843 18 Si 0.955 3.045 19 H -0.247 1.247 20 H -0.273 1.273 21 H -0.256 1.256 22 C -0.124 4.124 23 N -0.360 5.360 24 N -0.371 5.371 25 C 0.084 3.916 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.446 0.554 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.112 0.888 33 H 0.296 0.704 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.449 -5.423 10.864 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.020 3.980 3 N -0.315 5.315 4 C 0.072 3.928 5 N -0.756 5.756 6 S 2.812 3.188 7 O -0.958 6.958 8 O -0.951 6.951 9 C -0.723 4.723 10 C -0.125 4.125 11 C -0.119 4.119 12 C -0.213 4.213 13 C 0.049 3.951 14 C -0.516 4.516 15 H 0.078 0.922 16 C -0.165 4.165 17 N -0.469 5.469 18 Si 0.778 3.222 19 H -0.171 1.171 20 H -0.199 1.199 21 H -0.180 1.180 22 C -0.145 4.145 23 N -0.196 5.196 24 N -0.163 5.163 25 C -0.056 4.056 26 H 0.134 0.866 27 H 0.120 0.880 28 H 0.135 0.865 29 H 0.286 0.714 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.250 -5.471 11.392 22.198 hybrid contribution 0.652 -0.005 -1.130 1.305 sum -17.597 -5.477 10.262 21.094 Atomic orbital electron populations 1.20728 0.79112 1.06859 1.06443 1.25253 0.98458 0.80850 0.93406 1.70155 0.99449 1.31550 1.30347 1.19880 0.87514 0.87116 0.98282 1.52602 1.20102 1.19098 1.83752 1.01069 0.70977 0.72960 0.73748 1.93572 1.61308 1.53463 1.87482 1.93528 1.85077 1.72361 1.44124 1.30014 1.14813 1.11340 1.16098 1.20521 1.01424 0.90633 0.99901 1.21124 0.97687 0.99959 0.93135 1.21523 1.04027 0.95876 0.99887 1.17898 0.92575 0.92644 0.91964 1.19445 1.23712 1.00665 1.07733 0.92165 1.26779 0.94610 1.00967 0.94140 1.69705 1.27960 1.38538 1.10656 0.85644 0.77895 0.78167 0.80540 1.17138 1.19874 1.17951 1.20910 1.01478 0.99576 0.92547 1.78287 1.00136 1.08267 1.32955 1.50213 1.01453 1.09738 1.54906 1.22475 1.03187 0.74405 1.05546 0.86646 0.87960 0.86465 0.71365 0.84500 0.83848 0.87084 0.89323 0.86578 0.88759 0.88923 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.00 71.23 0.71 0.19 16 2 C 0.30 6.21 7.97 138.24 1.10 7.31 16 3 N -0.58 -17.04 11.21 -189.12 -2.12 -19.16 16 4 C 0.44 15.10 8.62 260.91 2.25 17.35 16 5 N -1.00 -33.17 5.90 -59.01 -0.35 -33.52 16 6 S 2.72 104.98 5.46 -56.49 -0.31 104.67 16 7 O -0.97 -40.39 17.27 -128.00 -2.21 -42.60 16 8 O -0.96 -39.49 16.79 -128.00 -2.15 -41.64 16 9 C -0.63 -27.48 5.72 22.22 0.13 -27.35 16 10 C -0.10 -4.26 8.24 22.46 0.18 -4.07 16 11 C -0.10 -4.04 10.02 22.22 0.22 -3.82 16 12 C -0.19 -9.00 7.18 22.73 0.16 -8.84 16 13 C 0.05 2.73 5.10 -21.29 -0.11 2.62 16 14 C -0.49 -27.48 9.57 23.46 0.22 -27.25 16 15 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 16 C 0.05 2.69 5.40 85.26 0.46 3.15 16 17 N -0.84 -45.80 13.93 21.83 0.30 -45.50 16 18 Si 0.96 41.73 24.52 68.60 1.68 43.42 16 19 H -0.25 -9.81 6.71 99.48 0.67 -9.14 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.26 -11.59 6.86 99.48 0.68 -10.91 16 22 C -0.12 -6.05 9.26 22.73 0.21 -5.84 16 23 N -0.36 -11.94 9.82 -59.03 -0.58 -12.52 16 24 N -0.37 -8.45 4.03 -359.91 -1.45 -9.90 16 25 C 0.08 0.91 11.14 127.77 1.42 2.33 16 26 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.12 0.11 7.74 -2.39 -0.02 0.09 16 29 H 0.45 12.24 8.95 -96.75 -0.87 11.37 16 30 H 0.14 5.16 6.87 -2.91 -0.02 5.14 16 31 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.11 4.98 4.73 -2.91 -0.01 4.97 16 33 H 0.30 14.35 8.30 -92.71 -0.77 13.59 16 34 H 0.12 5.56 7.60 -2.91 -0.02 5.54 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.14 0.22 7.70 -2.39 -0.02 0.21 16 Total: -1.00 -79.45 328.42 0.00 -79.46 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.20 Total: 21.52 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 6.97 Total: -44.22 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -4.20 Total: -120.60 kcal Atomic # 8 Polarization: -79.88 SS G_CDS: -4.36 Total: -84.24 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.68 Total: 43.42 kcal Atomic # 16 Polarization: 104.98 SS G_CDS: -0.31 Total: 104.67 kcal Total: -79.45 0.00 -79.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589980347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.654 kcal (2) G-P(sol) polarization free energy of solvation -79.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds