Wall clock time and date at job start Fri Apr 10 2020 18:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00243 * 2 1 4 4 H 1.48504 * 109.47151 * 274.96300 * 3 2 1 5 5 H 1.48508 * 109.47168 * 34.95829 * 3 2 1 6 6 H 1.48501 * 109.47448 * 154.95861 * 3 2 1 7 7 C 1.37878 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00149 * 185.96676 * 7 2 1 9 9 C 1.50700 * 119.99924 * 5.96436 * 7 2 1 10 10 O 1.42894 * 110.28836 * 297.82723 * 9 7 2 11 11 C 1.54260 * 110.32180 * 59.95548 * 9 7 2 12 12 C 1.54374 * 105.06030 * 118.99717 * 11 9 7 13 13 N 1.48559 * 104.59669 * 23.85350 * 12 11 9 14 14 C 1.38876 * 111.00108 * 200.96220 * 13 12 11 15 15 N 1.33126 * 120.57244 * 36.45614 * 14 13 12 16 16 C 1.31755 * 121.24221 * 179.71843 * 15 14 13 17 17 N 1.31947 * 121.89752 * 0.52633 * 16 15 14 18 18 C 1.32780 * 120.51470 * 359.72081 * 17 16 15 19 19 C 1.39470 * 119.75139 * 0.08431 * 18 17 16 20 20 N 1.39271 * 121.89206 * 179.66894 * 19 18 17 21 21 C 1.33234 * 125.61603 * 21.46441 * 20 19 18 22 22 O 1.21310 * 118.25389 * 180.10688 * 21 20 19 23 23 C 1.50361 * 123.48834 * 0.08112 * 21 20 19 24 24 S 1.76278 * 120.85955 * 180.12575 * 18 17 16 25 25 C 1.48824 * 104.23671 * 320.49003 * 13 12 11 26 26 H 0.96999 * 119.99969 * 359.97438 * 1 2 3 27 27 H 0.96698 * 114.00445 * 59.29759 * 10 9 7 28 28 H 1.08993 * 110.32169 * 237.89421 * 11 9 7 29 29 H 1.08997 * 110.32561 * 359.97438 * 11 9 7 30 30 H 1.08996 * 110.41546 * 142.63172 * 12 11 9 31 31 H 1.09000 * 110.41662 * 265.07218 * 12 11 9 32 32 H 1.07997 * 119.05152 * 180.26935 * 16 15 14 33 33 H 0.97005 * 117.19673 * 201.44719 * 20 19 18 34 34 H 1.08993 * 109.53141 * 204.77606 * 23 21 20 35 35 H 1.09001 * 109.59182 * 84.58518 * 23 21 20 36 36 H 1.09003 * 110.45118 * 280.77603 * 25 13 12 37 37 H 1.08992 * 110.50002 * 158.24907 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3918 2.1070 -1.3949 5 1 1.5029 2.6202 0.8023 6 1 3.5952 1.4122 0.5926 7 6 2.0045 -1.1940 -0.0005 8 1 3.0801 -1.1966 0.0967 9 6 1.2571 -2.4956 -0.1367 10 8 0.3644 -2.6719 0.9650 11 6 0.4786 -2.5295 -1.4680 12 6 1.0626 -3.7296 -2.2437 13 7 1.6280 -4.6150 -1.1933 14 6 2.5777 -5.4765 -1.7267 15 7 3.3939 -5.0681 -2.6959 16 6 4.3033 -5.8725 -3.2076 17 7 4.4434 -7.1182 -2.7956 18 6 3.6643 -7.6025 -1.8357 19 6 2.6891 -6.7889 -1.2594 20 7 1.8436 -7.2528 -0.2546 21 6 2.0826 -8.2943 0.5411 22 8 1.2493 -8.5838 1.3739 23 6 3.3298 -9.1302 0.4615 24 16 3.8458 -9.2642 -1.2761 25 6 2.2478 -3.6768 -0.2185 26 1 -0.4850 0.8400 0.0004 27 1 -0.2953 -1.9704 1.0529 28 1 -0.5845 -2.6807 -1.2811 29 1 0.6366 -1.6046 -2.0227 30 1 0.2758 -4.2463 -2.7933 31 1 1.8471 -3.3975 -2.9237 32 1 4.9499 -5.5030 -3.9897 33 1 1.0089 -6.7765 -0.1226 34 1 3.1281 -10.1246 0.8595 35 1 4.1232 -8.6593 1.0420 36 1 3.2172 -3.3355 -0.5819 37 1 2.3526 -4.1532 0.7562 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591976137.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:31 Heat of formation + Delta-G solvation = -27.952340 kcal Electronic energy + Delta-G solvation = -25281.463508 eV Core-core repulsion = 21570.829154 eV Total energy + Delta-G solvation = -3710.634354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.77336 -41.12245 -40.07999 -37.28058 -36.90208 -34.35346 -34.20461 -32.21178 -31.25851 -30.34438 -29.92334 -26.93344 -26.15777 -24.85920 -22.58551 -22.09317 -21.49838 -19.97291 -19.47198 -19.21753 -18.81444 -17.95411 -17.25482 -17.05442 -16.87074 -16.51146 -16.28907 -15.78919 -15.62222 -15.45309 -14.94265 -14.57481 -14.39358 -14.08166 -14.00117 -13.54507 -13.27580 -13.02016 -12.95097 -12.82220 -12.50738 -12.48605 -12.28901 -12.27747 -12.12908 -11.91242 -11.49419 -11.20671 -10.63125 -10.55439 -10.24722 -10.12224 -9.79389 -8.96071 -8.26076 -6.41317 -0.69772 -0.50448 -0.15967 0.69250 1.29737 1.39443 1.42790 1.51416 1.56542 2.24705 2.38654 2.43747 2.79078 2.95813 3.00033 3.17238 3.39837 3.72936 3.84131 3.90115 4.00492 4.15668 4.25961 4.41088 4.57619 4.63566 4.87469 4.94001 5.09324 5.12684 5.24074 5.42018 5.51556 5.55564 5.70999 5.75013 5.94809 6.12528 6.51209 6.63717 6.77448 7.29695 7.45107 8.79843 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.003880 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.359097 B = 7214.829137 C = 7955.939598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.036 3.964 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.563 4.563 8 H 0.053 0.947 9 C 0.243 3.757 10 O -0.596 6.596 11 C -0.111 4.111 12 C 0.048 3.952 13 N -0.468 5.468 14 C 0.320 3.680 15 N -0.535 5.535 16 C 0.303 3.697 17 N -0.480 5.480 18 C 0.115 3.885 19 C 0.070 3.930 20 N -0.637 5.637 21 C 0.519 3.481 22 O -0.543 6.543 23 C -0.132 4.132 24 S 0.023 5.977 25 C 0.077 3.923 26 H 0.271 0.729 27 H 0.378 0.622 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.242 0.758 33 H 0.421 0.579 34 H 0.187 0.813 35 H 0.153 0.847 36 H 0.056 0.944 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 -15.490 -5.281 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.166 4.166 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.601 4.601 8 H 0.071 0.929 9 C 0.203 3.797 10 O -0.405 6.405 11 C -0.150 4.150 12 C -0.079 4.079 13 N -0.191 5.191 14 C 0.078 3.922 15 N -0.253 5.253 16 C 0.011 3.989 17 N -0.197 5.197 18 C -0.145 4.145 19 C -0.040 4.040 20 N -0.281 5.281 21 C 0.306 3.694 22 O -0.421 6.421 23 C -0.283 4.283 24 S 0.260 5.740 25 C -0.048 4.048 26 H 0.081 0.919 27 H 0.228 0.772 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.257 0.743 33 H 0.261 0.739 34 H 0.205 0.795 35 H 0.171 0.829 36 H 0.074 0.926 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.593 -17.289 -5.728 20.139 hybrid contribution -0.951 3.388 0.832 3.616 sum 7.643 -13.901 -4.896 16.602 Atomic orbital electron populations 1.69721 1.06805 1.28395 1.49708 1.25606 0.95716 1.02064 0.93179 0.85564 0.78680 0.79243 0.78255 1.19846 1.20681 1.19856 1.21859 0.93825 0.92025 1.52429 0.92916 1.19398 0.86190 0.90498 0.83657 1.86106 1.49087 1.52640 1.52699 1.22665 0.98652 0.95872 0.97772 1.23123 0.99057 0.92709 0.93003 1.63322 1.24416 1.17888 1.13462 1.20288 0.90324 0.90287 0.91300 1.68523 1.05891 1.39135 1.11789 1.25646 0.92369 0.84302 0.96543 1.68697 1.23362 1.15853 1.11787 1.23341 0.93977 1.00580 0.96602 1.18697 0.96261 0.93578 0.95464 1.42965 1.22611 1.30878 1.31615 1.20514 0.89581 0.79661 0.79642 1.90847 1.47042 1.68668 1.35518 1.24207 0.97729 1.07663 0.98696 1.85848 1.82026 0.98537 1.07583 1.22983 0.96300 0.91392 0.94158 0.91930 0.77184 0.93368 0.92545 0.89559 0.91120 0.74261 0.73924 0.79545 0.82899 0.92605 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.06 10.87 21.45 0.23 -46.83 16 2 C 0.04 1.83 4.94 84.66 0.42 2.24 16 3 Si 0.96 41.01 29.54 68.60 2.03 43.04 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.56 -29.37 8.09 25.60 0.21 -29.16 16 8 H 0.05 2.77 7.60 -2.91 -0.02 2.74 16 9 C 0.24 11.67 1.06 -10.64 -0.01 11.66 16 10 O -0.60 -30.81 12.94 -148.98 -1.93 -32.74 16 11 C -0.11 -4.91 5.61 31.49 0.18 -4.73 16 12 C 0.05 1.75 6.34 86.45 0.55 2.30 16 13 N -0.47 -16.90 4.64 -686.07 -3.18 -20.09 16 14 C 0.32 10.11 5.60 133.04 0.74 10.85 16 15 N -0.54 -15.69 8.94 -197.04 -1.76 -17.46 16 16 C 0.30 6.96 12.29 180.85 2.22 9.18 16 17 N -0.48 -11.46 10.46 -196.39 -2.05 -13.51 16 18 C 0.12 2.79 6.96 84.85 0.59 3.38 16 19 C 0.07 1.95 6.59 38.62 0.25 2.20 16 20 N -0.64 -17.40 5.06 -305.13 -1.54 -18.94 16 21 C 0.52 12.78 7.61 87.79 0.67 13.45 16 22 O -0.54 -16.98 17.77 -3.12 -0.06 -17.04 16 23 C -0.13 -1.98 6.63 71.13 0.47 -1.50 16 24 S 0.02 0.40 22.49 -56.49 -1.27 -0.87 16 25 C 0.08 3.24 5.72 86.40 0.49 3.73 16 26 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 27 H 0.38 20.00 7.21 -74.06 -0.53 19.47 16 28 H 0.05 2.19 7.98 -2.39 -0.02 2.17 16 29 H 0.06 2.70 7.26 -2.39 -0.02 2.68 16 30 H 0.09 2.84 8.14 -2.39 -0.02 2.83 16 31 H 0.07 2.58 6.97 -2.39 -0.02 2.56 16 32 H 0.24 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.42 12.81 8.01 -92.70 -0.74 12.07 16 34 H 0.19 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 2.37 7.55 -2.39 -0.02 2.35 16 37 H 0.07 2.97 8.08 -2.39 -0.02 2.95 16 Total: -1.00 -61.49 322.91 -2.87 -64.37 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: -0.12 Total: 36.46 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 6.78 Total: 23.60 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -8.31 Total: -116.82 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -1.98 Total: -49.77 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -1.27 Total: -0.87 kcal Total: -61.49 -2.87 -64.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976137.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.413 kcal (2) G-P(sol) polarization free energy of solvation -61.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds