Wall clock time and date at job start Fri Apr 10 2020 18:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99591 * 2 1 4 4 H 1.48505 * 109.46522 * 239.99736 * 3 2 1 5 5 H 1.48498 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47504 * 119.99717 * 3 2 1 7 7 C 1.37870 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99964 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.87419 * 62.38892 * 9 7 2 11 11 C 1.55137 * 110.99127 * 298.54258 * 9 7 2 12 12 C 1.54321 * 103.01851 * 206.25948 * 11 9 7 13 13 N 1.47442 * 107.23266 * 22.27905 * 12 11 9 14 14 C 1.38870 * 110.99382 * 123.26437 * 13 12 11 15 15 N 1.33134 * 120.56454 * 239.86978 * 14 13 12 16 16 C 1.31757 * 121.23868 * 180.02562 * 15 14 13 17 17 N 1.31953 * 121.89917 * 359.93381 * 16 15 14 18 18 C 1.32779 * 120.51446 * 359.97438 * 17 16 15 19 19 C 1.39480 * 119.75208 * 0.09333 * 18 17 16 20 20 N 1.39266 * 121.89807 * 179.74544 * 19 18 17 21 21 C 1.33222 * 125.62249 * 21.39040 * 20 19 18 22 22 O 1.21314 * 118.25606 * 180.12331 * 21 20 19 23 23 C 1.50360 * 123.49460 * 0.10959 * 21 20 19 24 24 S 1.76257 * 120.86275 * 180.13998 * 18 17 16 25 25 C 1.47840 * 108.57092 * 0.99603 * 13 12 11 26 26 H 0.96992 * 120.00193 * 0.02562 * 1 2 3 27 27 H 0.96701 * 113.99905 * 297.60394 * 10 9 7 28 28 H 1.08993 * 110.70479 * 87.86962 * 11 9 7 29 29 H 1.09002 * 110.85576 * 324.70807 * 11 9 7 30 30 H 1.09005 * 109.88064 * 262.87571 * 12 11 9 31 31 H 1.08995 * 109.88546 * 141.69355 * 12 11 9 32 32 H 1.07996 * 119.05117 * 179.97438 * 16 15 14 33 33 H 0.97003 * 117.18819 * 201.42338 * 20 19 18 34 34 H 1.09004 * 109.53439 * 84.56241 * 23 21 20 35 35 H 1.08993 * 109.53188 * 204.71485 * 23 21 20 36 36 H 1.08993 * 110.37481 * 94.72892 * 25 13 12 37 37 H 1.09003 * 110.37350 * 217.07396 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6967 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4611 -2.6310 -1.1829 11 6 0.3734 -2.6341 1.2726 12 6 0.2533 -4.1622 1.4515 13 7 1.3920 -4.7757 0.7437 14 6 2.1423 -5.5690 1.6018 15 7 3.4290 -5.3038 1.8176 16 6 4.1533 -6.0478 2.6285 17 7 3.6436 -7.0855 3.2646 18 6 2.3673 -7.4144 3.1039 19 6 1.5594 -6.6585 2.2546 20 7 0.2168 -6.9664 2.0492 21 6 -0.5481 -7.6871 2.8679 22 8 -1.7049 -7.8761 2.5553 23 6 -0.0539 -8.2789 4.1588 24 16 1.6760 -8.7964 3.9518 25 6 2.2188 -3.6984 0.1592 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2246 -1.9553 -1.2754 28 1 -0.6075 -2.1864 1.1133 29 1 0.8662 -2.1828 2.1338 30 1 -0.6842 -4.5134 1.0203 31 1 0.2948 -4.4158 2.5108 32 1 5.1941 -5.8009 2.7774 33 1 -0.1969 -6.6272 1.2400 34 1 -0.1188 -7.5325 4.9504 35 1 -0.6649 -9.1425 4.4212 36 1 3.0362 -3.4399 0.8322 37 1 2.6078 -4.0033 -0.8123 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591976140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:40 Heat of formation + Delta-G solvation = -5.577723 kcal Electronic energy + Delta-G solvation = -25409.428298 eV Core-core repulsion = 21699.764180 eV Total energy + Delta-G solvation = -3709.664118 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73087 -40.02765 -38.69229 -36.14181 -35.25025 -33.05021 -32.27329 -30.93731 -30.41193 -28.93899 -28.54173 -25.58006 -24.50342 -23.68763 -21.31391 -20.93253 -19.97207 -18.58491 -18.22771 -18.10868 -17.15100 -16.78938 -16.15377 -15.93862 -15.45054 -15.01326 -14.95763 -14.62451 -14.49721 -14.11356 -13.68524 -13.24294 -13.07293 -12.89582 -12.43212 -12.03287 -11.75698 -11.72257 -11.44433 -11.33974 -11.25436 -11.05657 -10.95163 -10.63367 -10.55146 -10.48684 -10.13016 -9.44057 -9.40878 -9.20059 -8.72912 -8.38270 -8.28185 -7.89696 -6.33832 -4.42100 0.34171 0.73823 0.86514 1.62839 2.24904 2.56391 3.17745 3.23118 3.25771 3.39963 3.65612 3.75899 4.03189 4.21114 4.30222 4.48062 4.60254 4.76985 4.91450 4.97774 5.23448 5.55611 5.62952 5.81447 5.89106 6.11075 6.20730 6.31186 6.51471 6.61827 6.74995 6.77841 7.00313 7.18659 7.21764 7.27254 7.52141 7.67887 7.92900 8.00793 8.60571 9.25040 9.33919 10.73602 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.003898 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.919845 B = 7180.988615 C = 7994.715469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.253 3.747 10 O -0.580 6.580 11 C -0.142 4.142 12 C 0.047 3.953 13 N -0.465 5.465 14 C 0.360 3.640 15 N -0.525 5.525 16 C 0.314 3.686 17 N -0.497 5.497 18 C 0.132 3.868 19 C 0.033 3.967 20 N -0.636 5.636 21 C 0.521 3.479 22 O -0.513 6.513 23 C -0.138 4.138 24 S -0.014 6.014 25 C 0.061 3.939 26 H 0.269 0.731 27 H 0.380 0.620 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.206 0.794 33 H 0.424 0.576 34 H 0.129 0.871 35 H 0.156 0.844 36 H 0.092 0.908 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 -12.886 8.514 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.212 3.788 10 O -0.388 6.388 11 C -0.181 4.181 12 C -0.078 4.078 13 N -0.182 5.182 14 C 0.115 3.885 15 N -0.245 5.245 16 C 0.022 3.978 17 N -0.216 5.216 18 C -0.126 4.126 19 C -0.078 4.078 20 N -0.282 5.282 21 C 0.306 3.694 22 O -0.389 6.389 23 C -0.289 4.289 24 S 0.223 5.777 25 C -0.064 4.064 26 H 0.079 0.921 27 H 0.230 0.770 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.222 0.778 33 H 0.264 0.736 34 H 0.147 0.853 35 H 0.174 0.826 36 H 0.110 0.890 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.804 -14.627 8.574 17.185 hybrid contribution -1.051 2.935 -0.256 3.128 sum 1.753 -11.692 8.318 14.456 Atomic orbital electron populations 1.69700 1.05981 1.27798 1.49977 1.24989 0.95006 0.99544 0.93416 0.86486 0.79570 0.82093 0.78911 1.19915 1.21125 1.20071 1.21417 0.93700 0.90169 1.52163 0.91719 1.19561 0.86636 0.90883 0.81722 1.86150 1.51498 1.56843 1.44308 1.23332 1.03634 0.89707 1.01408 1.23082 0.91765 0.97815 0.95150 1.60602 1.09707 1.22931 1.24963 1.20239 0.89722 0.90941 0.87617 1.68405 1.05966 1.30834 1.19327 1.24937 1.00192 0.85567 0.87099 1.68543 1.09761 1.18209 1.25040 1.22713 0.93252 0.98635 0.98025 1.18539 0.86204 0.98983 1.04101 1.42906 1.08328 1.51623 1.25377 1.19833 0.85938 0.78081 0.85578 1.90853 1.16514 1.57878 1.73646 1.23999 0.97926 1.08031 0.98946 1.85864 1.02769 1.17605 1.71446 1.23262 0.95607 0.88028 0.99478 0.92145 0.77041 0.89326 0.91778 0.90088 0.93483 0.77763 0.73558 0.85305 0.82598 0.88958 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.60 10.75 55.43 0.60 -22.00 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 3 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.54 -13.55 8.27 -34.44 -0.28 -13.83 16 8 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 9 C 0.25 5.81 0.87 -89.63 -0.08 5.74 16 10 O -0.58 -14.08 13.16 -35.23 -0.46 -14.54 16 11 C -0.14 -2.99 5.37 -24.91 -0.13 -3.12 16 12 C 0.05 0.82 5.24 -2.84 -0.01 0.81 16 13 N -0.47 -8.36 4.79 -169.63 -0.81 -9.17 16 14 C 0.36 5.90 6.17 -154.29 -0.95 4.95 16 15 N -0.52 -8.31 8.31 -13.63 -0.11 -8.42 16 16 C 0.31 4.12 12.29 -92.05 -1.13 2.99 16 17 N -0.50 -6.77 10.46 -13.43 -0.14 -6.91 16 18 C 0.13 1.78 6.95 -16.68 -0.12 1.67 16 19 C 0.03 0.48 6.04 -83.46 -0.50 -0.03 16 20 N -0.64 -8.58 4.24 -10.11 -0.04 -8.63 16 21 C 0.52 6.54 7.61 -11.84 -0.09 6.45 16 22 O -0.51 -7.86 17.77 5.53 0.10 -7.77 16 23 C -0.14 -1.23 6.63 35.84 0.24 -0.99 16 24 S -0.01 -0.15 22.49 -107.50 -2.42 -2.56 16 25 C 0.06 1.25 5.56 -2.30 -0.01 1.24 16 26 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 27 H 0.38 9.31 7.56 45.56 0.34 9.66 16 28 H 0.09 1.98 7.54 -51.93 -0.39 1.58 16 29 H 0.06 1.40 8.04 -51.93 -0.42 0.99 16 30 H 0.08 1.37 7.76 -51.93 -0.40 0.96 16 31 H 0.05 0.77 7.04 -51.93 -0.37 0.40 16 32 H 0.21 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.42 6.01 6.96 -40.82 -0.28 5.73 16 34 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.16 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.90 6.48 -51.93 -0.34 1.56 16 37 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -27.95 319.06 -9.77 -37.72 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -3.09 Total: 15.06 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -3.17 Total: 7.62 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.51 Total: -55.14 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.37 Total: -22.31 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.42 Total: -2.56 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.95 -9.77 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.147 kcal (2) G-P(sol) polarization free energy of solvation -27.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds