Wall clock time and date at job start Fri Apr 10 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00271 * 2 1 4 4 H 1.48492 * 109.47468 * 270.00277 * 3 2 1 5 5 H 1.48504 * 109.46937 * 30.00202 * 3 2 1 6 6 H 1.48504 * 109.47447 * 150.00033 * 3 2 1 7 7 C 1.37878 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00035 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.46957 * 111.00343 * 169.99860 * 10 9 7 12 12 C 1.53043 * 109.36628 * 183.19003 * 11 10 9 13 13 N 1.46957 * 109.36423 * 301.59580 * 12 11 10 14 14 C 1.46897 * 111.00067 * 183.18664 * 13 12 11 15 15 H 1.09001 * 109.35823 * 53.66385 * 14 13 12 16 16 C 1.53064 * 109.36628 * 293.93002 * 14 13 12 17 17 C 1.53642 * 108.24471 * 191.15560 * 16 14 13 18 18 H 1.09002 * 109.96396 * 188.43202 * 17 16 14 19 19 C 1.53108 * 108.48150 * 308.69990 * 17 16 14 20 20 C 1.52900 * 109.79391 * 176.53047 * 19 17 16 21 21 C 1.53073 * 109.25388 * 299.38636 * 20 19 17 22 22 C 1.52973 * 109.13498 * 60.93673 * 21 20 19 23 23 C 1.52477 * 109.87464 * 300.41715 * 22 21 20 24 24 H 1.08995 * 108.23031 * 176.58193 * 23 22 21 25 25 N 1.45484 * 111.01797 * 294.48241 * 23 22 21 26 26 C 1.33524 * 123.64012 * 143.83966 * 25 23 22 27 27 O 1.21287 * 118.26144 * 177.59118 * 26 25 23 28 28 C 1.46958 * 110.88093 * 59.32487 * 13 12 11 29 29 C 1.46957 * 110.99910 * 293.80063 * 10 9 7 30 30 H 0.96999 * 120.00057 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47265 * 59.99842 * 9 7 2 32 32 H 1.08999 * 109.47023 * 299.99580 * 9 7 2 33 33 H 1.09000 * 109.48702 * 63.21542 * 11 10 9 34 34 H 1.09008 * 109.50097 * 303.16390 * 11 10 9 35 35 H 1.09002 * 109.49124 * 181.63427 * 12 11 10 36 36 H 1.08998 * 109.51138 * 61.57642 * 12 11 10 37 37 H 1.09005 * 109.70310 * 71.46733 * 16 14 13 38 38 H 1.08995 * 109.74076 * 310.86359 * 16 14 13 39 39 H 1.08998 * 109.41482 * 56.43505 * 19 17 16 40 40 H 1.08996 * 109.42346 * 296.62985 * 19 17 16 41 41 H 1.09003 * 109.50807 * 179.44875 * 20 19 17 42 42 H 1.09006 * 109.54505 * 59.34053 * 20 19 17 43 43 H 1.09000 * 109.52533 * 301.04165 * 21 20 19 44 44 H 1.09000 * 109.53170 * 180.83715 * 21 20 19 45 45 H 1.08998 * 109.39276 * 60.51614 * 22 21 20 46 46 H 1.08999 * 109.39294 * 180.31934 * 22 21 20 47 47 H 0.97002 * 118.21012 * 323.93233 * 25 23 22 48 48 H 1.09003 * 109.49307 * 60.64111 * 28 13 12 49 49 H 1.09000 * 109.49107 * 180.71491 * 28 13 12 50 50 H 1.08997 * 109.48445 * 296.77784 * 29 10 9 51 51 H 1.08993 * 109.49027 * 56.82204 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5207 -4.8941 0.2357 12 6 2.5561 -6.0189 0.3077 13 7 3.3201 -6.0589 -0.9471 14 6 4.2747 -7.1754 -0.9468 15 1 3.7464 -8.1025 -0.7243 16 6 5.3420 -6.9304 0.1226 17 6 6.4716 -7.9515 -0.0823 18 1 7.1736 -7.9019 0.7501 19 6 5.8533 -9.3499 -0.1615 20 6 6.9432 -10.3823 -0.4517 21 6 7.6040 -10.0551 -1.7932 22 6 8.2423 -8.6672 -1.7125 23 6 7.1765 -7.6243 -1.3944 24 1 7.6678 -6.6577 -1.2829 25 7 6.2185 -7.5083 -2.4831 26 6 4.9151 -7.2832 -2.3007 27 8 4.2110 -7.1597 -3.2805 28 6 4.0051 -4.7805 -1.1843 29 6 2.9696 -3.6557 -1.2562 30 1 -0.4850 0.8400 0.0004 31 1 0.6247 -2.5563 -0.8919 32 1 0.6241 -2.5575 0.8880 33 1 0.8257 -5.0912 -0.5805 34 1 0.9722 -4.8441 1.1764 35 1 2.0481 -6.9720 0.4546 36 1 3.2347 -5.8362 1.1409 37 1 4.9058 -7.0586 1.1133 38 1 5.7376 -5.9196 0.0231 39 1 5.1107 -9.3731 -0.9590 40 1 5.3723 -9.5878 0.7872 41 1 6.4996 -11.3769 -0.4974 42 1 7.6924 -10.3539 0.3396 43 1 6.8517 -10.0649 -2.5818 44 1 8.3719 -10.7972 -2.0117 45 1 8.9992 -8.6620 -0.9282 46 1 8.7093 -8.4276 -2.6677 47 1 6.5441 -7.6008 -3.3922 48 1 4.7000 -4.5833 -0.3680 49 1 4.5533 -4.8308 -2.1250 50 1 2.2911 -3.8387 -2.0893 51 1 3.4773 -2.7025 -1.4033 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595391171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:18 Heat of formation + Delta-G solvation = -30.985149 kcal Electronic energy + Delta-G solvation = -29065.730655 eV Core-core repulsion = 25385.137112 eV Total energy + Delta-G solvation = -3680.593543 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47810 -38.74015 -38.02178 -35.55431 -34.19199 -33.12295 -32.17044 -30.44021 -30.07875 -29.10229 -26.96502 -25.37419 -23.90670 -23.25119 -22.89908 -22.26379 -21.37366 -20.82386 -19.28355 -18.08415 -17.01272 -16.41302 -16.31491 -16.17221 -15.88890 -15.02336 -14.75405 -14.56618 -14.41300 -14.22751 -14.07250 -13.92878 -13.83467 -13.43852 -13.28800 -13.01847 -12.78531 -12.51161 -12.22139 -12.02838 -11.98294 -11.70696 -11.65574 -11.33041 -11.15326 -10.87665 -10.81689 -10.75442 -10.63662 -10.56143 -10.47166 -10.38828 -10.21556 -9.75533 -9.58308 -9.14404 -9.11290 -8.41116 -8.06046 -7.18767 -5.99591 -4.00881 2.63052 3.09119 3.33631 3.39528 3.43441 3.96056 4.14874 4.20878 4.38141 4.44796 4.48636 4.62462 4.71641 4.85320 4.93411 4.98529 5.00322 5.04647 5.13778 5.15938 5.32442 5.36096 5.42200 5.44595 5.50316 5.57390 5.60034 5.63647 5.72330 5.75605 5.79081 5.81756 5.85861 5.90147 6.00419 6.04541 6.11155 6.22543 6.47380 6.62192 6.71016 6.75654 7.08245 7.17969 7.31757 7.38315 7.42160 7.83035 8.12398 8.24369 8.25021 8.58933 9.06512 9.63095 11.11377 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.002886 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.970355 B = 9701.034266 C =10009.196018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.056 3.944 12 C 0.062 3.938 13 N -0.515 5.515 14 C 0.076 3.924 15 H 0.109 0.891 16 C -0.159 4.159 17 C -0.091 4.091 18 H 0.092 0.908 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.127 4.127 23 C 0.146 3.854 24 H 0.067 0.933 25 N -0.716 5.716 26 C 0.525 3.475 27 O -0.529 6.529 28 C 0.056 3.944 29 C 0.069 3.931 30 H 0.261 0.739 31 H -0.008 1.008 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.397 0.603 48 H 0.043 0.957 49 H 0.066 0.934 50 H 0.031 0.969 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.200 -21.948 0.294 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.073 4.073 12 C -0.066 4.066 13 N -0.239 5.239 14 C -0.035 4.035 15 H 0.127 0.873 16 C -0.199 4.199 17 C -0.111 4.111 18 H 0.110 0.890 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.165 4.165 23 C 0.041 3.959 24 H 0.085 0.915 25 N -0.371 5.371 26 C 0.311 3.689 27 O -0.404 6.404 28 C -0.072 4.072 29 C -0.059 4.059 30 H 0.071 0.929 31 H 0.010 0.990 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.232 0.768 48 H 0.061 0.939 49 H 0.085 0.915 50 H 0.049 0.951 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.532 -21.702 0.002 27.281 hybrid contribution 0.586 0.897 -0.294 1.111 sum 17.118 -20.804 -0.292 26.943 Atomic orbital electron populations 1.69960 1.06056 1.26728 1.51064 1.24990 0.94856 0.99283 0.95508 0.86513 0.79777 0.83185 0.78025 1.20744 1.21277 1.19820 1.21150 0.93414 0.89982 1.49957 0.91972 1.19695 0.90058 0.87263 0.96135 1.62305 1.28063 1.02737 1.33209 1.22062 0.94739 0.89903 1.00604 1.22196 0.96013 0.98847 0.89508 1.62198 1.24195 1.02468 1.35086 1.21626 0.92972 0.97712 0.91233 0.87296 1.22568 0.96529 1.00309 1.00461 1.21428 0.97594 0.95328 0.96730 0.88957 1.21703 0.98243 0.93660 1.02233 1.21523 0.98095 0.98647 0.97326 1.21529 1.00012 0.96241 0.98012 1.21754 0.97342 0.94822 1.02605 1.20619 0.89457 0.98788 0.87081 0.91546 1.45580 1.07650 1.73897 1.09940 1.20003 0.81515 0.75742 0.91654 1.90771 1.60375 1.48423 1.40811 1.22319 0.96436 0.88626 0.99806 1.21953 0.95445 0.97113 0.91423 0.92945 0.99023 0.95215 0.94963 0.90865 0.91103 0.93856 0.90145 0.90104 0.91646 0.91362 0.91904 0.91812 0.91737 0.91857 0.90265 0.91299 0.76760 0.93893 0.91522 0.95111 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.42 8.47 -34.44 -0.29 -14.71 16 8 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16 9 C 0.19 5.17 4.72 -4.98 -0.02 5.15 16 10 N -0.54 -11.95 4.70 -235.91 -1.11 -13.06 16 11 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 12 C 0.06 0.94 5.28 -3.77 -0.02 0.92 16 13 N -0.52 -8.14 4.44 -228.15 -1.01 -9.15 16 14 C 0.08 0.95 1.76 -69.10 -0.12 0.83 16 15 H 0.11 1.27 6.75 -51.93 -0.35 0.92 16 16 C -0.16 -1.55 4.21 -26.36 -0.11 -1.66 16 17 C -0.09 -0.65 2.72 -90.49 -0.25 -0.90 16 18 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 19 C -0.12 -0.84 4.55 -26.73 -0.12 -0.96 16 20 C -0.12 -0.68 5.92 -26.74 -0.16 -0.84 16 21 C -0.12 -0.68 5.84 -26.71 -0.16 -0.84 16 22 C -0.13 -0.67 5.54 -27.01 -0.15 -0.82 16 23 C 0.15 1.05 2.87 -69.01 -0.20 0.85 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 N -0.72 -6.95 4.67 -55.47 -0.26 -7.21 16 26 C 0.53 7.06 5.16 -11.81 -0.06 7.00 16 27 O -0.53 -9.59 17.41 5.55 0.10 -9.50 16 28 C 0.06 0.95 4.89 -3.76 -0.02 0.94 16 29 C 0.07 1.45 5.43 -3.76 -0.02 1.43 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 32 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.32 8.07 -51.92 -0.42 0.90 16 35 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.04 0.63 6.89 -51.93 -0.36 0.27 16 37 H 0.08 0.75 7.22 -51.93 -0.37 0.38 16 38 H 0.08 0.90 5.87 -51.93 -0.30 0.59 16 39 H 0.06 0.57 5.43 -51.93 -0.28 0.28 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.40 3.57 8.68 -40.82 -0.35 3.21 16 48 H 0.04 0.70 6.21 -51.93 -0.32 0.38 16 49 H 0.07 1.15 7.00 -51.93 -0.36 0.78 16 50 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.09 1.89 6.79 -51.93 -0.35 1.54 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -33.07 371.71 -11.67 -44.74 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.89 Total: -0.78 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.82 Total: -1.11 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -1.65 Total: -55.81 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.10 Total: -9.50 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.07 -11.67 -44.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.758 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds