Wall clock time and date at job start Fri Apr 10 2020 18:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00271 * 2 1 4 4 H 1.48492 * 109.47468 * 270.00277 * 3 2 1 5 5 H 1.48504 * 109.46937 * 30.00202 * 3 2 1 6 6 H 1.48504 * 109.47447 * 150.00033 * 3 2 1 7 7 C 1.37878 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00035 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.46957 * 111.00343 * 169.99860 * 10 9 7 12 12 C 1.53043 * 109.36628 * 183.19003 * 11 10 9 13 13 N 1.46957 * 109.36423 * 301.59580 * 12 11 10 14 14 C 1.46897 * 111.00067 * 183.18664 * 13 12 11 15 15 H 1.09001 * 109.35823 * 53.66385 * 14 13 12 16 16 C 1.53064 * 109.36628 * 293.93002 * 14 13 12 17 17 C 1.53642 * 108.24471 * 191.15560 * 16 14 13 18 18 H 1.09002 * 109.96396 * 188.43202 * 17 16 14 19 19 C 1.53108 * 108.48150 * 308.69990 * 17 16 14 20 20 C 1.52900 * 109.79391 * 176.53047 * 19 17 16 21 21 C 1.53073 * 109.25388 * 299.38636 * 20 19 17 22 22 C 1.52973 * 109.13498 * 60.93673 * 21 20 19 23 23 C 1.52477 * 109.87464 * 300.41715 * 22 21 20 24 24 H 1.08995 * 108.23031 * 176.58193 * 23 22 21 25 25 N 1.45484 * 111.01797 * 294.48241 * 23 22 21 26 26 C 1.33524 * 123.64012 * 143.83966 * 25 23 22 27 27 O 1.21287 * 118.26144 * 177.59118 * 26 25 23 28 28 C 1.46958 * 110.88093 * 59.32487 * 13 12 11 29 29 C 1.46957 * 110.99910 * 293.80063 * 10 9 7 30 30 H 0.96999 * 120.00057 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47265 * 59.99842 * 9 7 2 32 32 H 1.08999 * 109.47023 * 299.99580 * 9 7 2 33 33 H 1.09000 * 109.48702 * 63.21542 * 11 10 9 34 34 H 1.09008 * 109.50097 * 303.16390 * 11 10 9 35 35 H 1.09002 * 109.49124 * 181.63427 * 12 11 10 36 36 H 1.08998 * 109.51138 * 61.57642 * 12 11 10 37 37 H 1.09005 * 109.70310 * 71.46733 * 16 14 13 38 38 H 1.08995 * 109.74076 * 310.86359 * 16 14 13 39 39 H 1.08998 * 109.41482 * 56.43505 * 19 17 16 40 40 H 1.08996 * 109.42346 * 296.62985 * 19 17 16 41 41 H 1.09003 * 109.50807 * 179.44875 * 20 19 17 42 42 H 1.09006 * 109.54505 * 59.34053 * 20 19 17 43 43 H 1.09000 * 109.52533 * 301.04165 * 21 20 19 44 44 H 1.09000 * 109.53170 * 180.83715 * 21 20 19 45 45 H 1.08998 * 109.39276 * 60.51614 * 22 21 20 46 46 H 1.08999 * 109.39294 * 180.31934 * 22 21 20 47 47 H 0.97002 * 118.21012 * 323.93233 * 25 23 22 48 48 H 1.09003 * 109.49307 * 60.64111 * 28 13 12 49 49 H 1.09000 * 109.49107 * 180.71491 * 28 13 12 50 50 H 1.08997 * 109.48445 * 296.77784 * 29 10 9 51 51 H 1.08993 * 109.49027 * 56.82204 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5207 -4.8941 0.2357 12 6 2.5561 -6.0189 0.3077 13 7 3.3201 -6.0589 -0.9471 14 6 4.2747 -7.1754 -0.9468 15 1 3.7464 -8.1025 -0.7243 16 6 5.3420 -6.9304 0.1226 17 6 6.4716 -7.9515 -0.0823 18 1 7.1736 -7.9019 0.7501 19 6 5.8533 -9.3499 -0.1615 20 6 6.9432 -10.3823 -0.4517 21 6 7.6040 -10.0551 -1.7932 22 6 8.2423 -8.6672 -1.7125 23 6 7.1765 -7.6243 -1.3944 24 1 7.6678 -6.6577 -1.2829 25 7 6.2185 -7.5083 -2.4831 26 6 4.9151 -7.2832 -2.3007 27 8 4.2110 -7.1597 -3.2805 28 6 4.0051 -4.7805 -1.1843 29 6 2.9696 -3.6557 -1.2562 30 1 -0.4850 0.8400 0.0004 31 1 0.6247 -2.5563 -0.8919 32 1 0.6241 -2.5575 0.8880 33 1 0.8257 -5.0912 -0.5805 34 1 0.9722 -4.8441 1.1764 35 1 2.0481 -6.9720 0.4546 36 1 3.2347 -5.8362 1.1409 37 1 4.9058 -7.0586 1.1133 38 1 5.7376 -5.9196 0.0231 39 1 5.1107 -9.3731 -0.9590 40 1 5.3723 -9.5878 0.7872 41 1 6.4996 -11.3769 -0.4974 42 1 7.6924 -10.3539 0.3396 43 1 6.8517 -10.0649 -2.5818 44 1 8.3719 -10.7972 -2.0117 45 1 8.9992 -8.6620 -0.9282 46 1 8.7093 -8.4276 -2.6677 47 1 6.5441 -7.6008 -3.3922 48 1 4.7000 -4.5833 -0.3680 49 1 4.5533 -4.8308 -2.1250 50 1 2.2911 -3.8387 -2.0893 51 1 3.4773 -2.7025 -1.4033 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595391171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:16 Heat of formation + Delta-G solvation = -55.673662 kcal Electronic energy + Delta-G solvation = -29066.801229 eV Core-core repulsion = 25385.137112 eV Total energy + Delta-G solvation = -3681.664117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35157 -39.99534 -39.03824 -37.00653 -34.98829 -34.75616 -33.51704 -31.93169 -30.69524 -30.45540 -28.51540 -26.61764 -25.21352 -24.69001 -23.63877 -23.15477 -22.97783 -21.53121 -20.63740 -19.04620 -18.51113 -17.89359 -17.47636 -17.15995 -16.67629 -16.58181 -15.95829 -15.93477 -15.59514 -15.48140 -15.13241 -15.08139 -14.81392 -14.66967 -14.51085 -14.08600 -13.92583 -13.48765 -13.44851 -13.25260 -13.08668 -12.84502 -12.64540 -12.61721 -12.59308 -12.47856 -12.24955 -12.01447 -11.97849 -11.80546 -11.57357 -11.41337 -11.20502 -11.16112 -11.12117 -10.63439 -10.61453 -9.93993 -9.28250 -9.06630 -8.21625 -6.32304 1.40210 1.42056 1.53615 1.58662 2.23444 2.39492 2.87550 3.10324 3.25276 3.50363 3.60204 3.64881 3.76151 3.91232 4.01991 4.13890 4.15624 4.20581 4.26879 4.34112 4.35312 4.43677 4.45659 4.53020 4.56144 4.61450 4.66316 4.76536 4.88525 4.89587 4.94020 4.95628 4.99625 5.04206 5.10533 5.15623 5.18932 5.24851 5.25636 5.30347 5.33917 5.41279 5.54728 5.62050 5.82491 5.92702 6.01056 6.03782 6.27866 6.39085 6.58610 6.83066 7.27750 7.37378 8.89967 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.002886 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.970355 B = 9701.034266 C =10009.196018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.523 4.523 8 H 0.064 0.936 9 C 0.208 3.792 10 N -0.536 5.536 11 C 0.051 3.949 12 C 0.073 3.927 13 N -0.538 5.538 14 C 0.080 3.920 15 H 0.120 0.880 16 C -0.153 4.153 17 C -0.084 4.084 18 H 0.118 0.882 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.121 4.121 23 C 0.139 3.861 24 H 0.073 0.927 25 N -0.703 5.703 26 C 0.523 3.477 27 O -0.588 6.588 28 C 0.075 3.925 29 C 0.073 3.927 30 H 0.265 0.735 31 H -0.046 1.046 32 H 0.008 0.992 33 H 0.013 0.987 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.400 0.600 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.003 0.997 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.446 -23.087 1.923 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.082 0.918 9 C 0.082 3.918 10 N -0.261 5.261 11 C -0.077 4.077 12 C -0.054 4.054 13 N -0.263 5.263 14 C -0.031 4.031 15 H 0.137 0.863 16 C -0.192 4.192 17 C -0.104 4.104 18 H 0.136 0.864 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.159 4.159 23 C 0.035 3.965 24 H 0.091 0.909 25 N -0.355 5.355 26 C 0.310 3.690 27 O -0.467 6.467 28 C -0.053 4.053 29 C -0.056 4.056 30 H 0.073 0.927 31 H -0.028 1.028 32 H 0.027 0.973 33 H 0.031 0.969 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.093 0.907 47 H 0.236 0.764 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.021 0.979 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.841 -22.883 1.654 30.332 hybrid contribution -0.436 1.161 -0.827 1.491 sum 19.405 -21.722 0.827 29.139 Atomic orbital electron populations 1.70097 1.07850 1.27963 1.51724 1.25964 0.95771 1.03367 0.94720 0.85344 0.78669 0.78021 0.78362 1.20037 1.20587 1.18513 1.21443 0.93625 0.90944 1.50148 0.91753 1.19362 0.90102 0.89077 0.93267 1.62261 1.27085 1.03125 1.33602 1.22212 0.95795 0.89580 1.00124 1.22123 0.95274 0.98329 0.89661 1.62065 1.25716 1.02640 1.35839 1.21662 0.93285 0.96523 0.91668 0.86268 1.22508 0.96444 1.00503 0.99704 1.21460 0.97057 0.94464 0.97374 0.86362 1.21687 0.98248 0.93916 1.01912 1.21514 0.98008 0.98132 0.97670 1.21531 0.99853 0.96940 0.97518 1.21741 0.96835 0.93570 1.03707 1.20911 0.89256 1.00040 0.86304 0.90876 1.45583 1.06899 1.71822 1.11158 1.20236 0.82300 0.75137 0.91371 1.90747 1.62031 1.51490 1.42462 1.22017 0.94997 0.88063 1.00205 1.21899 0.95588 0.98219 0.89897 0.92651 1.02817 0.97348 0.96855 0.90154 0.88179 0.92372 0.88981 0.91187 0.93806 0.90469 0.92003 0.90236 0.93659 0.90771 0.88189 0.90734 0.76404 0.92503 0.91854 0.97866 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.29 21.45 0.28 -57.65 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.52 -30.58 8.47 25.60 0.22 -30.36 16 8 H 0.06 3.66 7.13 -2.91 -0.02 3.63 16 9 C 0.21 11.70 4.72 85.56 0.40 12.10 16 10 N -0.54 -24.57 4.70 -900.30 -4.23 -28.80 16 11 C 0.05 1.97 5.61 86.31 0.48 2.45 16 12 C 0.07 2.11 5.28 86.31 0.46 2.57 16 13 N -0.54 -16.70 4.44 -875.75 -3.89 -20.59 16 14 C 0.08 1.86 1.76 44.02 0.08 1.94 16 15 H 0.12 2.56 6.75 -2.39 -0.02 2.55 16 16 C -0.15 -2.52 4.21 30.83 0.13 -2.39 16 17 C -0.08 -0.91 2.72 -10.71 -0.03 -0.93 16 18 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 19 C -0.12 -1.30 4.55 30.60 0.14 -1.16 16 20 C -0.12 -0.95 5.92 30.59 0.18 -0.77 16 21 C -0.12 -1.05 5.84 30.61 0.18 -0.87 16 22 C -0.12 -0.85 5.54 30.41 0.17 -0.68 16 23 C 0.14 1.59 2.87 44.84 0.13 1.72 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 N -0.70 -12.81 4.67 -448.49 -2.09 -14.90 16 26 C 0.52 13.87 5.16 87.68 0.45 14.32 16 27 O -0.59 -21.93 17.41 -3.05 -0.05 -21.99 16 28 C 0.08 2.57 4.89 86.31 0.42 2.99 16 29 C 0.07 3.17 5.43 86.31 0.47 3.64 16 30 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 31 H -0.05 -2.86 8.12 -2.39 -0.02 -2.88 16 32 H 0.01 0.50 8.03 -2.39 -0.02 0.48 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 2.92 8.07 -2.38 -0.02 2.90 16 35 H 0.10 2.33 8.10 -2.39 -0.02 2.31 16 36 H 0.06 1.53 6.89 -2.39 -0.02 1.51 16 37 H 0.09 1.35 7.22 -2.38 -0.02 1.34 16 38 H 0.07 1.35 5.87 -2.39 -0.01 1.33 16 39 H 0.04 0.68 5.43 -2.39 -0.01 0.66 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.04 0.57 7.87 -2.39 -0.02 0.55 16 44 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.40 6.91 8.68 -92.71 -0.80 6.10 16 48 H 0.06 1.79 6.21 -2.39 -0.01 1.77 16 49 H 0.06 2.21 7.00 -2.39 -0.02 2.19 16 50 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 51 H 0.07 3.19 6.79 -2.39 -0.02 3.18 16 Total: -1.00 -75.38 371.71 -3.51 -78.89 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.11 Total: 12.94 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 4.34 Total: 4.99 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -9.93 Total: -121.95 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -75.38 -3.51 -78.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.212 kcal (2) G-P(sol) polarization free energy of solvation -75.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds