Wall clock time and date at job start Fri Apr 10 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46994 * 2 1 4 4 C 1.50696 * 109.47194 * 119.99879 * 2 1 3 5 5 O 1.21282 * 119.99917 * 107.98457 * 4 2 1 6 6 N 1.34772 * 119.99917 * 287.98751 * 4 2 1 7 7 C 1.46505 * 120.00056 * 180.02562 * 6 4 2 8 8 C 1.52994 * 117.49914 * 223.61912 * 7 6 4 9 9 C 1.53003 * 60.00215 * 252.51174 * 8 7 6 10 10 N 1.46901 * 109.47334 * 240.00167 * 2 1 3 11 11 C 1.46959 * 110.99863 * 311.95213 * 10 2 1 12 12 C 1.53045 * 109.36688 * 183.18983 * 11 10 2 13 13 N 1.46955 * 109.36452 * 301.59749 * 12 11 10 14 14 C 1.46899 * 111.00115 * 183.18917 * 13 12 11 15 15 C 1.53004 * 109.47114 * 164.57354 * 14 13 12 16 16 C 1.50700 * 115.54626 * 304.45473 * 15 14 13 17 17 H 1.08001 * 120.00455 * 116.72233 * 16 15 14 18 18 C 1.37881 * 120.00020 * 296.71356 * 16 15 14 19 19 N 1.31514 * 119.99692 * 173.95204 * 18 16 15 20 20 Si 1.86800 * 119.99956 * 354.23451 * 18 16 15 21 21 H 1.48496 * 109.47252 * 94.11850 * 20 18 16 22 22 H 1.48503 * 109.46602 * 214.11737 * 20 18 16 23 23 H 1.48495 * 109.47191 * 334.11260 * 20 18 16 24 24 C 1.52994 * 117.50384 * 90.12504 * 15 14 13 25 25 C 1.52997 * 117.50085 * 158.78573 * 15 14 13 26 26 C 1.46955 * 110.88337 * 59.31838 * 13 12 11 27 27 C 1.46956 * 111.00135 * 75.74458 * 10 2 1 28 28 H 1.09000 * 109.46994 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47428 * 300.00134 * 1 2 3 30 30 H 1.09002 * 109.47235 * 60.00143 * 1 2 3 31 31 H 0.97004 * 120.00509 * 359.97438 * 6 4 2 32 32 H 1.09001 * 115.54564 * 9.33028 * 7 6 4 33 33 H 1.09006 * 117.49938 * 359.97438 * 8 7 6 34 34 H 1.08999 * 117.50021 * 145.01576 * 8 7 6 35 35 H 1.09006 * 117.49333 * 252.51388 * 9 8 7 36 36 H 1.08991 * 117.52137 * 107.48201 * 9 8 7 37 37 H 1.09007 * 109.49261 * 63.21956 * 11 10 2 38 38 H 1.09006 * 109.50201 * 303.16752 * 11 10 2 39 39 H 1.09004 * 109.49056 * 181.63170 * 12 11 10 40 40 H 1.09000 * 109.48912 * 61.56304 * 12 11 10 41 41 H 1.08993 * 109.47245 * 44.57075 * 14 13 12 42 42 H 1.09003 * 109.46831 * 284.56779 * 14 13 12 43 43 H 0.97007 * 119.99690 * 180.02562 * 19 18 16 44 44 H 1.09000 * 117.49981 * 215.00588 * 24 15 14 45 45 H 1.09002 * 117.49407 * 0.02562 * 24 15 14 46 46 H 1.09006 * 117.49635 * 359.97438 * 25 15 14 47 47 H 1.08998 * 117.50122 * 144.96867 * 25 15 14 48 48 H 1.09002 * 109.48574 * 60.64591 * 26 13 12 49 49 H 1.08996 * 109.49561 * 180.71327 * 26 13 12 50 50 H 1.09000 * 109.49293 * 296.78298 * 27 10 2 51 51 H 1.09000 * 109.48476 * 56.82688 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5403 -1.8073 1.1324 6 7 1.9172 -0.1267 2.4397 7 6 2.4061 -0.8170 3.6359 8 6 1.5162 -0.7904 4.8801 9 6 2.7977 0.0444 4.8382 10 7 2.0198 -0.6925 -1.1994 11 6 1.3306 -1.9772 -1.3841 12 6 1.9232 -2.7016 -2.5950 13 7 1.7804 -1.8546 -3.7874 14 6 2.2701 -2.5471 -4.9868 15 6 1.7668 -1.8212 -6.2361 16 6 0.2732 -1.6422 -6.3263 17 1 -0.1527 -0.6497 -6.3279 18 6 -0.5498 -2.7455 -6.4068 19 7 -1.8558 -2.5961 -6.3656 20 14 0.1904 -4.4531 -6.5667 21 1 0.3186 -5.0652 -5.2198 22 1 -0.6912 -5.2975 -7.4123 23 1 1.5322 -4.3542 -7.1952 24 6 2.6474 -0.7096 -6.8103 25 6 2.5310 -2.0491 -7.5417 26 6 2.4695 -0.5698 -3.6029 27 6 1.8768 0.1545 -2.3918 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.5113 0.7509 2.5181 32 1 2.9886 -1.7198 3.4525 33 1 0.5672 -0.2589 4.8090 34 1 1.5129 -1.6760 5.5156 35 1 3.6376 -0.2920 5.4461 36 1 2.6921 1.1247 4.7391 37 1 0.2681 -1.7994 -1.5508 38 1 1.4611 -2.5915 -0.4931 39 1 1.3940 -3.6417 -2.7513 40 1 2.9794 -2.9037 -2.4169 41 1 1.9020 -3.5730 -4.9897 42 1 3.3601 -2.5521 -4.9839 43 1 -2.4348 -3.3724 -6.4219 44 1 2.1464 0.1512 -7.2532 45 1 3.5856 -0.4957 -6.2982 46 1 3.3928 -2.7160 -7.5106 47 1 1.9535 -2.0701 -8.4659 48 1 3.5319 -0.7477 -3.4362 49 1 2.3387 0.0443 -4.4938 50 1 0.8207 0.3566 -2.5700 51 1 2.4056 1.0948 -2.2354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602760711.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:02 Heat of formation + Delta-G solvation = 45.286130 kcal Electronic energy + Delta-G solvation = -28484.489346 eV Core-core repulsion = 24807.203174 eV Total energy + Delta-G solvation = -3677.286172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.39808 -38.85235 -37.50748 -36.71687 -34.72508 -33.10352 -31.94199 -30.73329 -30.26540 -27.24926 -25.64966 -24.76589 -23.32456 -23.07163 -22.77881 -21.65935 -21.39347 -20.50471 -19.00837 -18.81910 -17.23244 -16.91252 -16.33253 -15.65429 -15.24705 -14.96408 -14.82951 -14.72990 -14.40104 -14.31605 -14.06855 -13.67042 -13.44435 -13.16383 -13.01605 -12.77940 -12.47859 -12.31409 -12.09244 -11.98217 -11.80917 -11.70108 -11.51164 -11.32554 -10.96022 -10.89553 -10.71784 -10.67012 -10.55030 -10.51329 -10.15861 -10.02633 -9.61958 -9.32971 -9.00754 -8.91280 -8.49627 -8.28102 -8.11062 -7.42066 -5.94246 -3.89724 2.48664 2.75997 3.36904 3.46933 3.52623 3.55974 4.05966 4.40209 4.48750 4.52438 4.56386 4.59427 4.61551 4.88026 4.94020 5.06770 5.22282 5.31510 5.38900 5.41569 5.44274 5.49366 5.56431 5.59682 5.67093 5.72030 5.76029 5.84852 5.91102 5.97060 6.04171 6.08095 6.21200 6.25552 6.27082 6.32635 6.38862 6.42083 6.53056 6.53996 6.68211 6.80819 7.04131 7.15980 7.19999 7.24164 7.34071 7.79484 7.89940 7.99725 8.13033 8.67379 9.08204 9.71363 11.18731 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.002993 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.070686 B = 9352.541139 C = 9668.377487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.066 3.934 3 H 0.102 0.898 4 C 0.527 3.473 5 O -0.516 6.516 6 N -0.708 5.708 7 C 0.084 3.916 8 C -0.195 4.195 9 C -0.191 4.191 10 N -0.518 5.518 11 C 0.055 3.945 12 C 0.059 3.941 13 N -0.507 5.507 14 C 0.095 3.905 15 C 0.012 3.988 16 C -0.452 4.452 17 H 0.073 0.927 18 C 0.081 3.919 19 N -0.903 5.903 20 Si 0.867 3.133 21 H -0.282 1.282 22 H -0.297 1.297 23 H -0.254 1.254 24 C -0.188 4.188 25 C -0.198 4.198 26 C 0.065 3.935 27 C 0.058 3.942 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.400 0.600 32 H 0.137 0.863 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.060 0.940 42 H 0.012 0.988 43 H 0.260 0.740 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.026 0.974 49 H 0.090 0.910 50 H 0.051 0.949 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.703 7.166 19.475 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.046 4.046 3 H 0.120 0.880 4 C 0.313 3.687 5 O -0.390 6.390 6 N -0.360 5.360 7 C -0.022 4.022 8 C -0.234 4.234 9 C -0.230 4.230 10 N -0.242 5.242 11 C -0.073 4.073 12 C -0.070 4.070 13 N -0.231 5.231 14 C -0.033 4.033 15 C 0.010 3.990 16 C -0.490 4.490 17 H 0.091 0.909 18 C -0.120 4.120 19 N -0.541 5.541 20 Si 0.696 3.304 21 H -0.209 1.209 22 H -0.224 1.224 23 H -0.178 1.178 24 C -0.225 4.225 25 C -0.236 4.236 26 C -0.063 4.063 27 C -0.070 4.070 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.234 0.766 32 H 0.155 0.845 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.030 0.970 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.104 0.896 48 H 0.044 0.956 49 H 0.108 0.892 50 H 0.069 0.931 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.909 6.240 19.345 21.811 hybrid contribution 0.065 -0.514 0.086 0.525 sum 7.974 5.726 19.430 21.769 Atomic orbital electron populations 1.22400 0.94720 1.03807 1.03174 1.21567 0.94574 0.98417 0.90064 0.88011 1.20649 0.78008 0.86221 0.83844 1.90668 1.42391 1.20136 1.85767 1.45416 1.63048 1.21755 1.05744 1.21560 1.01362 0.98924 0.80387 1.23425 0.95324 1.03021 1.01636 1.23371 0.99329 0.98609 1.01659 1.62107 1.56451 1.04326 1.01354 1.22342 0.96328 0.90078 0.98525 1.22109 0.98697 0.96284 0.89887 1.61891 1.56612 1.03229 1.01392 1.21776 0.94052 0.97091 0.90368 1.19389 0.94563 0.96518 0.88504 1.20065 0.85897 0.94413 1.48580 0.90937 1.24792 0.94385 0.98448 0.94335 1.69904 1.02885 1.30178 1.51164 0.87046 0.80247 0.85227 0.77901 1.20875 1.22402 1.17792 1.22812 1.00635 0.92933 1.06116 1.23069 1.02615 0.98790 0.99135 1.22105 0.94685 0.92299 0.97244 1.22240 1.00512 0.95194 0.89034 0.91121 0.92002 0.90563 0.76608 0.84530 0.88523 0.88059 0.87959 0.88511 0.93459 0.89289 0.90909 0.95095 0.92146 0.97014 0.92999 0.89905 0.91382 0.91674 0.89613 0.95555 0.89189 0.93102 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 8.30 37.16 0.31 -1.63 16 2 C 0.07 0.76 2.70 -68.86 -0.19 0.58 16 3 H 0.10 0.94 7.92 -51.93 -0.41 0.53 16 4 C 0.53 6.47 6.96 -10.99 -0.08 6.40 16 5 O -0.52 -8.43 13.92 5.56 0.08 -8.35 16 6 N -0.71 -6.21 5.57 -53.81 -0.30 -6.51 16 7 C 0.08 0.71 6.43 -67.93 -0.44 0.27 16 8 C -0.20 -1.26 10.46 -26.73 -0.28 -1.54 16 9 C -0.19 -1.15 10.46 -26.73 -0.28 -1.43 16 10 N -0.52 -7.73 4.39 -227.87 -1.00 -8.73 16 11 C 0.05 0.92 4.43 -3.77 -0.02 0.90 16 12 C 0.06 1.10 5.59 -3.77 -0.02 1.08 16 13 N -0.51 -10.41 4.38 -234.47 -1.03 -11.43 16 14 C 0.09 2.06 4.45 -3.82 -0.02 2.04 16 15 C 0.01 0.27 0.60 -155.66 -0.09 0.17 16 16 C -0.45 -12.48 9.11 -34.44 -0.31 -12.80 16 17 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 18 C 0.08 2.34 5.46 -17.82 -0.10 2.24 16 19 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 20 Si 0.87 21.87 24.83 -169.99 -4.22 17.65 16 21 H -0.28 -7.07 7.07 56.52 0.40 -6.67 16 22 H -0.30 -7.59 7.11 56.52 0.40 -7.18 16 23 H -0.25 -6.05 5.85 56.52 0.33 -5.72 16 24 C -0.19 -3.78 8.32 -26.70 -0.22 -4.01 16 25 C -0.20 -4.23 8.28 -26.70 -0.22 -4.45 16 26 C 0.07 1.15 5.35 -3.76 -0.02 1.13 16 27 C 0.06 0.87 5.40 -3.76 -0.02 0.85 16 28 H 0.07 0.87 6.39 -51.93 -0.33 0.54 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.87 7.00 -51.93 -0.36 0.50 16 31 H 0.40 2.38 8.83 -40.82 -0.36 2.02 16 32 H 0.14 1.40 7.40 -51.93 -0.38 1.02 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.83 6.41 -51.92 -0.33 0.50 16 38 H 0.09 1.52 5.98 -51.93 -0.31 1.21 16 39 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 1.39 4.65 -51.93 -0.24 1.15 16 42 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 45 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 48 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.09 1.66 6.02 -51.93 -0.31 1.34 16 50 H 0.05 0.82 7.00 -51.93 -0.36 0.46 16 51 H 0.07 0.89 8.02 -51.93 -0.42 0.48 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -32.61 386.82 -10.80 -43.41 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.94 Total: 5.18 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -1.99 Total: -10.18 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -1.55 Total: -53.54 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.08 Total: -8.35 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.22 Total: 17.65 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.61 -10.80 -43.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602760711.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.693 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds