Wall clock time and date at job start Fri Apr 10 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48555 * 111.00152 * 2 1 4 4 C 1.54383 * 104.59635 * 200.96059 * 3 2 1 5 5 C 1.54258 * 105.05772 * 23.85040 * 4 3 2 6 6 C 1.48559 * 110.99831 * 244.58192 * 2 1 3 7 7 H 1.09001 * 110.51422 * 40.21348 * 6 2 1 8 8 C 1.50701 * 110.41225 * 277.82218 * 6 2 1 9 9 O 1.21277 * 120.00055 * 344.82211 * 8 6 2 10 10 N 1.34781 * 119.99980 * 164.83086 * 8 6 2 11 11 C 1.47081 * 120.87943 * 179.97438 * 10 8 6 12 12 C 1.53232 * 108.52196 * 231.20245 * 11 10 8 13 13 N 1.46898 * 109.33910 * 306.17204 * 12 11 10 14 14 C 1.46902 * 110.99812 * 187.24925 * 13 12 11 15 15 C 1.52998 * 109.47027 * 161.62756 * 14 13 12 16 16 C 1.50704 * 115.55138 * 66.50283 * 15 14 13 17 17 H 1.08004 * 120.00224 * 220.24791 * 16 15 14 18 18 C 1.37875 * 119.99778 * 40.23918 * 16 15 14 19 19 N 1.31515 * 120.00219 * 195.92924 * 18 16 15 20 20 Si 1.86804 * 119.99941 * 15.93498 * 18 16 15 21 21 H 1.48505 * 109.46754 * 266.41485 * 20 18 16 22 22 H 1.48502 * 109.47370 * 146.41941 * 20 18 16 23 23 H 1.48500 * 109.47264 * 26.41708 * 20 18 16 24 24 C 1.53003 * 117.52340 * 212.20241 * 15 14 13 25 25 C 1.52994 * 60.00004 * 107.48072 * 24 15 14 26 26 C 1.46899 * 111.27134 * 63.10737 * 13 12 11 27 27 C 1.47074 * 120.87984 * 0.02562 * 10 8 6 28 28 H 1.09001 * 109.47386 * 175.41600 * 1 2 3 29 29 H 1.09001 * 109.46877 * 295.41957 * 1 2 3 30 30 H 1.09004 * 109.47200 * 55.41463 * 1 2 3 31 31 H 1.09005 * 110.41314 * 82.18320 * 3 2 1 32 32 H 1.08990 * 110.41460 * 319.74036 * 3 2 1 33 33 H 1.09004 * 110.32040 * 264.96066 * 4 3 2 34 34 H 1.09001 * 110.41142 * 142.79587 * 4 3 2 35 35 H 1.08994 * 110.32938 * 241.10042 * 5 4 3 36 36 H 1.09006 * 110.40786 * 118.93856 * 5 4 3 37 37 H 1.09005 * 109.62751 * 111.49261 * 11 10 8 38 38 H 1.09001 * 109.79092 * 351.00873 * 11 10 8 39 39 H 1.08999 * 109.49407 * 186.21049 * 12 11 10 40 40 H 1.09006 * 109.51326 * 66.14501 * 12 11 10 41 41 H 1.09004 * 109.47147 * 41.63389 * 14 13 12 42 42 H 1.08995 * 109.47557 * 281.63114 * 14 13 12 43 43 H 0.96999 * 119.99842 * 180.02562 * 19 18 16 44 44 H 1.08996 * 117.50275 * 214.97224 * 24 15 14 45 45 H 1.09003 * 117.49436 * 359.97438 * 24 15 14 46 46 H 1.08997 * 117.50185 * 252.51063 * 25 24 15 47 47 H 1.09004 * 117.49607 * 107.49258 * 25 24 15 48 48 H 1.09000 * 109.49567 * 56.84827 * 26 13 12 49 49 H 1.08993 * 109.49637 * 176.93582 * 26 13 12 50 50 H 1.09004 * 109.62360 * 248.50485 * 27 10 8 51 51 H 1.08995 * 109.63297 * 9.08855 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4432 -0.0540 -1.3585 6 6 2.0013 -0.5953 -1.2527 7 1 1.4104 -0.2730 -2.1100 8 6 2.0102 -2.0993 -1.1575 9 8 1.8828 -2.6394 -0.0792 10 7 2.1600 -2.8441 -2.2708 11 6 2.1720 -4.3132 -2.2002 12 6 3.4129 -4.8258 -2.9387 13 7 3.4348 -4.2690 -4.2979 14 6 4.5129 -4.8690 -5.0952 15 6 4.2391 -4.6336 -6.5820 16 6 4.3018 -3.1977 -7.0352 17 1 3.5793 -2.8235 -7.7454 18 6 5.2815 -2.3617 -6.5430 19 7 5.1636 -1.0589 -6.6789 20 14 6.7764 -3.0795 -5.6831 21 1 6.5322 -3.1222 -4.2189 22 1 7.9630 -2.2313 -5.9624 23 1 7.0226 -4.4555 -6.1842 24 6 4.7105 -5.7061 -7.5662 25 6 3.2189 -5.5462 -7.2657 26 6 3.5514 -2.8049 -4.2722 27 6 2.3168 -2.2094 -3.5882 28 1 -0.3634 -1.0244 -0.0821 29 1 -0.3633 0.4411 0.9282 30 1 -0.3634 0.5834 -0.8461 31 1 2.0079 1.7916 1.0121 32 1 1.4099 2.0211 -0.6601 33 1 4.1483 1.1747 0.2935 34 1 3.6955 2.0993 -1.1695 35 1 4.1482 -0.7694 -0.9352 36 1 3.6942 0.1537 -2.3987 37 1 1.2740 -4.7099 -2.6740 38 1 2.2079 -4.6323 -1.1586 39 1 3.3809 -5.9140 -2.9919 40 1 4.3099 -4.5141 -2.4034 41 1 4.5568 -5.9403 -4.8991 42 1 5.4638 -4.4106 -4.8239 43 1 5.8530 -0.4708 -6.3329 44 1 5.0660 -5.3731 -8.5413 45 1 5.2163 -6.5795 -7.1545 46 1 2.7431 -6.3145 -6.6563 47 1 2.5931 -5.1079 -8.0431 48 1 4.4461 -2.5209 -3.7182 49 1 3.6197 -2.4275 -5.2924 50 1 1.4327 -2.4035 -4.1956 51 1 2.4501 -1.1348 -3.4635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602784610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:11 Heat of formation + Delta-G solvation = 35.388865 kcal Electronic energy + Delta-G solvation = -29601.054503 eV Core-core repulsion = 25923.339154 eV Total energy + Delta-G solvation = -3677.715350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.37757 -38.70335 -37.63026 -36.23663 -33.76984 -32.61328 -32.26266 -30.95200 -29.38468 -27.92394 -26.11737 -25.72685 -24.06953 -23.33554 -21.99818 -21.37905 -21.06987 -20.39361 -19.11395 -18.49985 -17.37865 -16.33986 -16.12016 -15.83179 -15.46358 -14.86704 -14.67153 -14.60992 -14.40534 -14.10930 -13.89961 -13.85156 -13.48558 -13.17279 -12.92370 -12.80005 -12.52665 -12.39224 -12.08768 -11.89684 -11.62212 -11.60608 -11.48529 -11.22808 -11.14879 -10.87853 -10.82099 -10.77670 -10.64391 -10.51940 -10.32255 -9.98613 -9.51152 -9.48572 -9.19051 -8.85546 -8.55271 -8.45741 -8.19595 -7.49900 -6.34745 -4.19574 2.82829 3.08562 3.09107 3.26517 3.30986 3.97176 4.21215 4.37462 4.49637 4.52489 4.83365 4.84499 4.91296 5.05820 5.24252 5.28326 5.31066 5.34058 5.40998 5.43741 5.49884 5.56355 5.59589 5.69821 5.75542 5.81389 5.81832 5.83878 5.89548 5.94487 6.01635 6.03897 6.05452 6.15718 6.17950 6.32041 6.46630 6.52287 6.58322 6.63757 6.74825 6.76711 6.85431 6.95562 7.17507 7.24218 7.61042 7.61508 7.77327 7.88262 8.40071 8.44463 8.74952 9.29667 10.74573 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.004404 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.015440 B = 6356.186937 C = 7228.993781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.492 5.492 3 C 0.032 3.968 4 C -0.122 4.122 5 C -0.114 4.114 6 C 0.044 3.956 7 H 0.076 0.924 8 C 0.524 3.476 9 O -0.533 6.533 10 N -0.612 5.612 11 C 0.123 3.877 12 C 0.035 3.965 13 N -0.515 5.515 14 C 0.087 3.913 15 C 0.013 3.987 16 C -0.477 4.477 17 H 0.081 0.919 18 C 0.082 3.918 19 N -0.883 5.883 20 Si 0.874 3.126 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.261 1.261 24 C -0.210 4.210 25 C -0.171 4.171 26 C 0.009 3.991 27 C 0.113 3.887 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.027 0.973 41 H 0.055 0.945 42 H 0.026 0.974 43 H 0.267 0.733 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.020 0.980 49 H 0.169 0.831 50 H 0.076 0.924 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 1.994 9.208 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.216 5.216 3 C -0.095 4.095 4 C -0.160 4.160 5 C -0.153 4.153 6 C -0.068 4.068 7 H 0.094 0.906 8 C 0.311 3.689 9 O -0.409 6.409 10 N -0.346 5.346 11 C 0.000 4.000 12 C -0.094 4.094 13 N -0.240 5.240 14 C -0.040 4.040 15 C 0.012 3.988 16 C -0.514 4.514 17 H 0.099 0.901 18 C -0.122 4.122 19 N -0.519 5.519 20 Si 0.705 3.295 21 H -0.211 1.211 22 H -0.224 1.224 23 H -0.186 1.186 24 C -0.249 4.249 25 C -0.209 4.209 26 C -0.118 4.118 27 C -0.010 4.010 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.038 0.962 49 H 0.186 0.814 50 H 0.094 0.906 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.884 1.489 10.089 11.774 hybrid contribution 1.427 0.223 0.083 1.447 sum -4.457 1.711 10.172 11.237 Atomic orbital electron populations 1.22514 0.87573 1.02304 1.00881 1.65066 1.08396 1.14659 1.33444 1.23157 0.95347 0.89635 1.01389 1.22283 0.96605 0.97323 0.99756 1.22273 0.94148 0.97356 1.01512 1.22646 0.98140 0.92816 0.93150 0.90642 1.20228 0.76392 0.88659 0.83658 1.90643 1.49371 1.73396 1.27477 1.48340 1.71833 1.06900 1.07561 1.21598 0.98222 0.79226 1.00939 1.22521 0.96631 0.99599 0.90660 1.61792 1.46363 1.05902 1.09897 1.21867 0.91228 0.96756 0.94140 1.19234 0.99163 0.92400 0.88041 1.20316 1.14383 0.90588 1.26097 0.90130 1.24915 0.97335 0.94527 0.95395 1.69960 1.33987 1.02227 1.45709 0.87136 0.83219 0.80045 0.79088 1.21073 1.22423 1.18593 1.23135 0.97095 1.02136 1.02511 1.22607 0.91305 1.03331 1.03642 1.23520 0.93789 0.87300 1.07181 1.22039 1.00114 0.96854 0.81955 0.91153 0.91001 0.95353 0.89772 0.93551 0.90780 0.90731 0.90726 0.89765 0.90951 0.89449 0.90302 0.95479 0.92651 0.95680 0.92293 0.89790 0.91712 0.90942 0.90234 0.96170 0.81446 0.90597 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.44 60.06 0.57 0.75 16 2 N -0.49 -6.65 4.92 -231.72 -1.14 -7.79 16 3 C 0.03 0.35 6.49 -2.18 -0.01 0.33 16 4 C -0.12 -1.32 7.00 -25.35 -0.18 -1.50 16 5 C -0.11 -1.53 6.12 -25.35 -0.16 -1.69 16 6 C 0.04 0.63 1.68 -67.22 -0.11 0.51 16 7 H 0.08 0.99 6.89 -51.93 -0.36 0.64 16 8 C 0.52 8.84 6.60 -10.98 -0.07 8.77 16 9 O -0.53 -10.50 16.02 5.56 0.09 -10.41 16 10 N -0.61 -10.07 3.01 -172.50 -0.52 -10.59 16 11 C 0.12 1.93 6.59 -3.61 -0.02 1.91 16 12 C 0.04 0.58 5.59 -3.71 -0.02 0.56 16 13 N -0.52 -9.89 4.57 -234.36 -1.07 -10.96 16 14 C 0.09 1.79 4.50 -3.82 -0.02 1.77 16 15 C 0.01 0.28 1.31 -155.66 -0.20 0.08 16 16 C -0.48 -11.90 7.48 -34.44 -0.26 -12.16 16 17 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 18 C 0.08 2.07 3.35 -17.82 -0.06 2.01 16 19 N -0.88 -23.33 13.84 55.43 0.77 -22.57 16 20 Si 0.87 20.54 23.35 -169.99 -3.97 16.57 16 21 H -0.28 -6.61 6.27 56.52 0.35 -6.26 16 22 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.26 -6.05 7.10 56.52 0.40 -5.65 16 24 C -0.21 -4.23 9.92 -26.73 -0.27 -4.50 16 25 C -0.17 -3.35 9.95 -26.74 -0.27 -3.62 16 26 C 0.01 0.18 4.23 -3.72 -0.02 0.17 16 27 C 0.11 1.88 6.34 -3.63 -0.02 1.86 16 28 H 0.07 0.91 7.96 -51.93 -0.41 0.50 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.29 7.98 -51.93 -0.41 -0.12 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 36 H 0.08 1.11 7.36 -51.93 -0.38 0.73 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.37 7.07 -51.93 -0.37 1.01 16 39 H 0.08 1.15 7.91 -51.93 -0.41 0.74 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 1.03 7.74 -51.93 -0.40 0.63 16 42 H 0.03 0.57 2.59 -51.93 -0.13 0.43 16 43 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 44 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 48 H 0.02 0.44 7.09 -51.93 -0.37 0.07 16 49 H 0.17 3.87 3.48 -51.93 -0.18 3.69 16 50 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 51 H 0.08 1.23 4.85 -51.93 -0.25 0.98 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -28.21 375.39 -10.06 -38.27 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.76 Total: 6.57 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.12 Total: -4.75 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -1.96 Total: -51.91 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -3.97 Total: 16.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.21 -10.06 -38.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602784610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.656 kcal (2) G-P(sol) polarization free energy of solvation -28.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds