Wall clock time and date at job start Fri Apr 10 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48555 * 111.00152 * 2 1 4 4 C 1.54383 * 104.59635 * 200.96059 * 3 2 1 5 5 C 1.54258 * 105.05772 * 23.85040 * 4 3 2 6 6 C 1.48559 * 110.99831 * 244.58192 * 2 1 3 7 7 H 1.09001 * 110.51422 * 40.21348 * 6 2 1 8 8 C 1.50701 * 110.41225 * 277.82218 * 6 2 1 9 9 O 1.21277 * 120.00055 * 344.82211 * 8 6 2 10 10 N 1.34781 * 119.99980 * 164.83086 * 8 6 2 11 11 C 1.47081 * 120.87943 * 179.97438 * 10 8 6 12 12 C 1.53232 * 108.52196 * 231.20245 * 11 10 8 13 13 N 1.46898 * 109.33910 * 306.17204 * 12 11 10 14 14 C 1.46902 * 110.99812 * 187.24925 * 13 12 11 15 15 C 1.52998 * 109.47027 * 161.62756 * 14 13 12 16 16 C 1.50704 * 115.55138 * 66.50283 * 15 14 13 17 17 H 1.08004 * 120.00224 * 220.24791 * 16 15 14 18 18 C 1.37875 * 119.99778 * 40.23918 * 16 15 14 19 19 N 1.31515 * 120.00219 * 195.92924 * 18 16 15 20 20 Si 1.86804 * 119.99941 * 15.93498 * 18 16 15 21 21 H 1.48505 * 109.46754 * 266.41485 * 20 18 16 22 22 H 1.48502 * 109.47370 * 146.41941 * 20 18 16 23 23 H 1.48500 * 109.47264 * 26.41708 * 20 18 16 24 24 C 1.53003 * 117.52340 * 212.20241 * 15 14 13 25 25 C 1.52994 * 60.00004 * 107.48072 * 24 15 14 26 26 C 1.46899 * 111.27134 * 63.10737 * 13 12 11 27 27 C 1.47074 * 120.87984 * 0.02562 * 10 8 6 28 28 H 1.09001 * 109.47386 * 175.41600 * 1 2 3 29 29 H 1.09001 * 109.46877 * 295.41957 * 1 2 3 30 30 H 1.09004 * 109.47200 * 55.41463 * 1 2 3 31 31 H 1.09005 * 110.41314 * 82.18320 * 3 2 1 32 32 H 1.08990 * 110.41460 * 319.74036 * 3 2 1 33 33 H 1.09004 * 110.32040 * 264.96066 * 4 3 2 34 34 H 1.09001 * 110.41142 * 142.79587 * 4 3 2 35 35 H 1.08994 * 110.32938 * 241.10042 * 5 4 3 36 36 H 1.09006 * 110.40786 * 118.93856 * 5 4 3 37 37 H 1.09005 * 109.62751 * 111.49261 * 11 10 8 38 38 H 1.09001 * 109.79092 * 351.00873 * 11 10 8 39 39 H 1.08999 * 109.49407 * 186.21049 * 12 11 10 40 40 H 1.09006 * 109.51326 * 66.14501 * 12 11 10 41 41 H 1.09004 * 109.47147 * 41.63389 * 14 13 12 42 42 H 1.08995 * 109.47557 * 281.63114 * 14 13 12 43 43 H 0.96999 * 119.99842 * 180.02562 * 19 18 16 44 44 H 1.08996 * 117.50275 * 214.97224 * 24 15 14 45 45 H 1.09003 * 117.49436 * 359.97438 * 24 15 14 46 46 H 1.08997 * 117.50185 * 252.51063 * 25 24 15 47 47 H 1.09004 * 117.49607 * 107.49258 * 25 24 15 48 48 H 1.09000 * 109.49567 * 56.84827 * 26 13 12 49 49 H 1.08993 * 109.49637 * 176.93582 * 26 13 12 50 50 H 1.09004 * 109.62360 * 248.50485 * 27 10 8 51 51 H 1.08995 * 109.63297 * 9.08855 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4432 -0.0540 -1.3585 6 6 2.0013 -0.5953 -1.2527 7 1 1.4104 -0.2730 -2.1100 8 6 2.0102 -2.0993 -1.1575 9 8 1.8828 -2.6394 -0.0792 10 7 2.1600 -2.8441 -2.2708 11 6 2.1720 -4.3132 -2.2002 12 6 3.4129 -4.8258 -2.9387 13 7 3.4348 -4.2690 -4.2979 14 6 4.5129 -4.8690 -5.0952 15 6 4.2391 -4.6336 -6.5820 16 6 4.3018 -3.1977 -7.0352 17 1 3.5793 -2.8235 -7.7454 18 6 5.2815 -2.3617 -6.5430 19 7 5.1636 -1.0589 -6.6789 20 14 6.7764 -3.0795 -5.6831 21 1 6.5322 -3.1222 -4.2189 22 1 7.9630 -2.2313 -5.9624 23 1 7.0226 -4.4555 -6.1842 24 6 4.7105 -5.7061 -7.5662 25 6 3.2189 -5.5462 -7.2657 26 6 3.5514 -2.8049 -4.2722 27 6 2.3168 -2.2094 -3.5882 28 1 -0.3634 -1.0244 -0.0821 29 1 -0.3633 0.4411 0.9282 30 1 -0.3634 0.5834 -0.8461 31 1 2.0079 1.7916 1.0121 32 1 1.4099 2.0211 -0.6601 33 1 4.1483 1.1747 0.2935 34 1 3.6955 2.0993 -1.1695 35 1 4.1482 -0.7694 -0.9352 36 1 3.6942 0.1537 -2.3987 37 1 1.2740 -4.7099 -2.6740 38 1 2.2079 -4.6323 -1.1586 39 1 3.3809 -5.9140 -2.9919 40 1 4.3099 -4.5141 -2.4034 41 1 4.5568 -5.9403 -4.8991 42 1 5.4638 -4.4106 -4.8239 43 1 5.8530 -0.4708 -6.3329 44 1 5.0660 -5.3731 -8.5413 45 1 5.2163 -6.5795 -7.1545 46 1 2.7431 -6.3145 -6.6563 47 1 2.5931 -5.1079 -8.0431 48 1 4.4461 -2.5209 -3.7182 49 1 3.6197 -2.4275 -5.2924 50 1 1.4327 -2.4035 -4.1956 51 1 2.4501 -1.1348 -3.4635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602784610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:10 Heat of formation + Delta-G solvation = 15.966345 kcal Electronic energy + Delta-G solvation = -29601.896727 eV Core-core repulsion = 25923.339154 eV Total energy + Delta-G solvation = -3678.557573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63805 -40.05526 -38.94250 -37.74756 -35.21622 -34.50946 -33.24639 -32.29611 -30.57442 -29.35213 -27.89266 -26.69218 -25.57402 -24.69408 -23.28672 -22.94502 -22.00931 -21.69210 -20.88763 -19.81336 -18.68689 -18.10342 -17.39842 -17.20333 -16.86990 -16.20665 -16.10414 -15.91051 -15.70708 -15.55099 -15.20965 -14.97268 -14.82327 -14.80265 -14.41407 -14.27110 -13.99780 -13.57602 -13.35854 -13.17117 -12.99402 -12.84039 -12.64559 -12.57190 -12.40870 -12.29240 -12.27930 -12.13811 -12.06745 -11.98850 -11.77315 -11.63286 -11.26348 -10.93959 -10.78769 -10.52821 -10.17474 -9.73477 -9.51524 -9.07290 -8.32529 -6.16785 1.20196 1.34328 1.41284 1.51598 1.84473 2.27774 2.79567 2.96219 3.05743 3.37435 3.53356 3.64832 3.79674 3.83993 3.94307 4.02322 4.08917 4.16442 4.23495 4.23953 4.36565 4.37461 4.40197 4.45067 4.47412 4.54339 4.59754 4.65089 4.65270 4.74278 4.79191 4.83983 4.86006 4.92385 4.95493 5.00282 5.02666 5.10259 5.15077 5.15181 5.30407 5.34334 5.59769 5.61676 5.70081 5.75039 5.95270 6.12418 6.29391 6.39561 6.44563 6.76651 7.12081 7.32950 8.80257 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.004404 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.015440 B = 6356.186937 C = 7228.993781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.035 3.965 4 C -0.117 4.117 5 C -0.115 4.115 6 C 0.046 3.954 7 H 0.087 0.913 8 C 0.521 3.479 9 O -0.564 6.564 10 N -0.612 5.612 11 C 0.124 3.876 12 C 0.038 3.962 13 N -0.516 5.516 14 C 0.088 3.912 15 C -0.014 4.014 16 C -0.472 4.472 17 H 0.044 0.956 18 C 0.055 3.945 19 N -0.916 5.916 20 Si 0.916 3.084 21 H -0.286 1.286 22 H -0.305 1.305 23 H -0.252 1.252 24 C -0.203 4.203 25 C -0.154 4.154 26 C 0.017 3.983 27 C 0.123 3.877 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.011 0.989 41 H 0.081 0.919 42 H 0.007 0.993 43 H 0.267 0.733 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.073 0.927 48 H -0.004 1.004 49 H 0.140 0.860 50 H 0.082 0.918 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 1.243 9.963 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.240 5.240 3 C -0.092 4.092 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.065 4.065 7 H 0.104 0.896 8 C 0.310 3.690 9 O -0.443 6.443 10 N -0.346 5.346 11 C 0.002 3.998 12 C -0.090 4.090 13 N -0.239 5.239 14 C -0.039 4.039 15 C -0.015 4.015 16 C -0.509 4.509 17 H 0.063 0.937 18 C -0.145 4.145 19 N -0.554 5.554 20 Si 0.746 3.254 21 H -0.214 1.214 22 H -0.234 1.234 23 H -0.176 1.176 24 C -0.241 4.241 25 C -0.191 4.191 26 C -0.111 4.111 27 C 0.000 4.000 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.029 0.971 41 H 0.099 0.901 42 H 0.024 0.976 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.114 0.886 47 H 0.091 0.909 48 H 0.014 0.986 49 H 0.158 0.842 50 H 0.101 0.899 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.603 0.720 10.830 12.704 hybrid contribution 1.600 0.435 -0.185 1.669 sum -5.003 1.156 10.645 11.818 Atomic orbital electron populations 1.22512 0.86629 1.01534 1.02373 1.65055 1.09537 1.16409 1.32994 1.23234 0.94953 0.88413 1.02612 1.22305 0.97118 0.96408 0.99704 1.22257 0.93206 0.98214 1.01711 1.22625 0.98764 0.90942 0.94195 0.89553 1.20728 0.75385 0.89852 0.83068 1.90618 1.50922 1.74244 1.28490 1.48394 1.71468 1.07388 1.07367 1.21650 0.98373 0.78858 1.00967 1.22597 0.96319 1.01111 0.89020 1.61819 1.45640 1.05235 1.11242 1.21839 0.90610 0.98119 0.93338 1.19223 1.01983 0.91032 0.89274 1.20334 1.13065 0.92572 1.24937 0.93733 1.25239 0.98772 0.94494 0.95987 1.70032 1.34711 1.03174 1.47462 0.86477 0.80894 0.79737 0.78268 1.21399 1.23370 1.17573 1.23149 0.97738 1.01780 1.01454 1.22623 0.91032 1.02533 1.02914 1.23253 0.94277 0.88214 1.05372 1.21904 0.98788 0.97349 0.81912 0.93055 0.89445 0.93854 0.88427 0.91952 0.90620 0.88897 0.93014 0.89979 0.89477 0.89427 0.87550 0.97092 0.90073 0.97582 0.92389 0.90631 0.89385 0.88575 0.90853 0.98564 0.84244 0.89931 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.44 127.69 1.21 1.59 16 2 N -0.52 -13.21 4.92 -887.04 -4.36 -17.57 16 3 C 0.03 0.67 6.49 86.45 0.56 1.23 16 4 C -0.12 -2.37 7.00 31.49 0.22 -2.15 16 5 C -0.12 -3.05 6.12 31.49 0.19 -2.86 16 6 C 0.05 1.28 1.68 44.32 0.07 1.35 16 7 H 0.09 2.16 6.89 -2.39 -0.02 2.14 16 8 C 0.52 17.40 6.60 87.66 0.58 17.98 16 9 O -0.56 -22.19 16.02 -3.02 -0.05 -22.24 16 10 N -0.61 -19.73 3.01 -818.04 -2.46 -22.19 16 11 C 0.12 3.71 6.59 86.35 0.57 4.28 16 12 C 0.04 1.20 5.59 86.38 0.48 1.69 16 13 N -0.52 -19.07 4.57 -895.37 -4.09 -23.16 16 14 C 0.09 3.45 4.50 86.30 0.39 3.84 16 15 C -0.01 -0.59 1.31 -52.93 -0.07 -0.66 16 16 C -0.47 -23.84 7.48 25.60 0.19 -23.64 16 17 H 0.04 2.53 8.06 -2.91 -0.02 2.50 16 18 C 0.06 2.85 3.35 84.65 0.28 3.14 16 19 N -0.92 -49.73 13.84 21.45 0.30 -49.43 16 20 Si 0.92 42.62 23.35 68.60 1.60 44.22 16 21 H -0.29 -13.33 6.27 99.48 0.62 -12.71 16 22 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 23 H -0.25 -11.18 7.10 99.48 0.71 -10.48 16 24 C -0.20 -7.67 9.92 30.59 0.30 -7.36 16 25 C -0.15 -5.64 9.95 30.59 0.30 -5.34 16 26 C 0.02 0.67 4.23 86.37 0.37 1.03 16 27 C 0.12 4.05 6.34 86.33 0.55 4.60 16 28 H 0.05 1.29 7.96 -2.39 -0.02 1.27 16 29 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.04 0.79 7.98 -2.39 -0.02 0.77 16 31 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.06 1.01 7.90 -2.39 -0.02 0.99 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.58 7.85 -2.39 -0.02 1.56 16 36 H 0.08 2.16 7.36 -2.38 -0.02 2.14 16 37 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.09 2.65 7.07 -2.39 -0.02 2.64 16 39 H 0.11 2.77 7.91 -2.39 -0.02 2.75 16 40 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 41 H 0.08 2.74 7.74 -2.39 -0.02 2.72 16 42 H 0.01 0.29 2.59 -2.39 -0.01 0.28 16 43 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 45 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 46 H 0.10 3.08 8.14 -2.39 -0.02 3.07 16 47 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 48 H 0.00 -0.17 7.09 -2.39 -0.02 -0.19 16 49 H 0.14 6.55 3.48 -2.39 -0.01 6.54 16 50 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 51 H 0.09 2.78 4.85 -2.39 -0.01 2.76 16 Total: -1.00 -61.45 375.39 -2.04 -63.49 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.82 Total: 28.17 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 6.20 Total: -1.29 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -10.62 Total: -112.36 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.60 Total: 44.22 kcal Total: -61.45 -2.04 -63.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602784610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.455 kcal (2) G-P(sol) polarization free energy of solvation -61.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds