Wall clock time and date at job start Fri Apr 10 2020 18:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48531 * 110.99589 * 2 1 4 4 C 1.54939 * 103.22218 * 159.72309 * 3 2 1 5 5 C 1.54587 * 102.92051 * 322.58123 * 4 3 2 6 6 C 1.47897 * 110.99899 * 117.39540 * 2 1 3 7 7 H 1.09005 * 110.08127 * 333.60289 * 6 2 1 8 8 C 1.50703 * 109.91889 * 94.80529 * 6 2 1 9 9 O 1.21281 * 119.99832 * 17.58644 * 8 6 2 10 10 N 1.34773 * 119.99753 * 197.58902 * 8 6 2 11 11 C 1.47086 * 120.88051 * 179.97438 * 10 8 6 12 12 C 1.53235 * 108.52198 * 231.20722 * 11 10 8 13 13 N 1.46899 * 109.34309 * 306.16701 * 12 11 10 14 14 C 1.46900 * 111.00422 * 187.25390 * 13 12 11 15 15 C 1.52991 * 109.47188 * 163.79352 * 14 13 12 16 16 C 1.50701 * 115.55107 * 306.35826 * 15 14 13 17 17 H 1.07999 * 120.00439 * 144.24518 * 16 15 14 18 18 C 1.37876 * 119.99908 * 324.25465 * 16 15 14 19 19 N 1.31517 * 120.00223 * 351.20061 * 18 16 15 20 20 Si 1.86801 * 120.00057 * 171.21079 * 18 16 15 21 21 H 1.48502 * 109.46981 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47300 * 119.99862 * 20 18 16 23 23 H 1.48508 * 109.47036 * 239.99551 * 20 18 16 24 24 C 1.53004 * 117.49900 * 160.69139 * 15 14 13 25 25 C 1.53000 * 117.50039 * 92.03288 * 15 14 13 26 26 C 1.46902 * 111.26760 * 63.10492 * 13 12 11 27 27 C 1.47077 * 120.88553 * 0.02562 * 10 8 6 28 28 H 1.08994 * 109.47430 * 302.60458 * 1 2 3 29 29 H 1.08995 * 109.46993 * 62.60960 * 1 2 3 30 30 H 1.09005 * 109.46577 * 182.60163 * 1 2 3 31 31 H 1.08996 * 110.67279 * 41.28224 * 3 2 1 32 32 H 1.09005 * 110.66337 * 278.14986 * 3 2 1 33 33 H 1.09009 * 110.71669 * 204.22442 * 4 3 2 34 34 H 1.09000 * 110.72905 * 80.94753 * 4 3 2 35 35 H 1.09004 * 110.30882 * 263.04167 * 5 4 3 36 36 H 1.09002 * 110.39197 * 140.92405 * 5 4 3 37 37 H 1.08995 * 109.62757 * 111.49326 * 11 10 8 38 38 H 1.09001 * 109.78690 * 351.01078 * 11 10 8 39 39 H 1.09003 * 109.49323 * 186.21113 * 12 11 10 40 40 H 1.09001 * 109.51907 * 66.14527 * 12 11 10 41 41 H 1.08999 * 109.47046 * 283.79526 * 14 13 12 42 42 H 1.08994 * 109.46632 * 43.78960 * 14 13 12 43 43 H 0.96996 * 120.00498 * 185.00481 * 19 18 16 44 44 H 1.09000 * 117.49599 * 359.97438 * 24 15 14 45 45 H 1.08999 * 117.49858 * 145.01783 * 24 15 14 46 46 H 1.09006 * 117.49734 * 214.98212 * 25 15 14 47 47 H 1.08995 * 117.49815 * 359.97390 * 25 15 14 48 48 H 1.09005 * 109.49472 * 56.85368 * 26 13 12 49 49 H 1.08994 * 109.49604 * 176.93970 * 26 13 12 50 50 H 1.09000 * 109.62825 * 248.50354 * 27 10 8 51 51 H 1.09005 * 109.62903 * 8.88999 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 0.5227 5 6 3.2982 0.1054 1.5930 6 6 1.9991 -0.6353 1.2259 7 1 1.2771 -0.5432 2.0373 8 6 2.2939 -2.0899 0.9641 9 8 2.3971 -2.4921 -0.1755 10 7 2.4428 -2.9436 1.9962 11 6 2.7302 -4.3671 1.7630 12 6 1.7256 -5.2039 2.5621 13 7 1.7561 -4.7867 3.9703 14 6 0.9351 -5.6775 4.8012 15 6 1.2981 -5.4790 6.2742 16 6 2.7609 -5.6201 6.6079 17 1 3.2045 -4.9933 7.3673 18 6 3.5330 -6.5493 5.9434 19 7 2.9646 -7.4277 5.1467 20 14 5.3866 -6.5606 6.1751 21 1 5.7745 -5.4786 7.1154 22 1 5.8083 -7.8726 6.7284 23 1 6.0505 -6.3393 4.8653 24 6 0.2862 -5.9499 7.3208 25 6 0.4878 -4.4535 7.0695 26 6 1.3331 -3.3881 4.1210 27 6 2.3210 -2.4769 3.3856 28 1 -0.3634 0.5537 0.8657 29 1 -0.3633 0.4728 -0.9124 30 1 -0.3633 -1.0267 0.0467 31 1 1.4237 2.0205 0.6728 32 1 2.0041 1.7976 -1.0096 33 1 3.8122 2.1353 0.9715 34 1 4.1116 0.8836 -0.2788 35 1 3.2136 0.5487 2.5852 36 1 4.1468 -0.5778 1.5557 37 1 3.7430 -4.5953 2.0950 38 1 2.6332 -4.5940 0.7013 39 1 1.9914 -6.2585 2.4894 40 1 0.7240 -5.0527 2.1596 41 1 -0.1191 -5.4441 4.6522 42 1 1.1216 -6.7132 4.5174 43 1 3.4976 -8.1265 4.7362 44 1 -0.6383 -6.4007 6.9598 45 1 0.6786 -6.3614 8.2507 46 1 1.0127 -3.8810 7.8343 47 1 -0.3036 -3.9198 6.5432 48 1 0.3370 -3.2615 3.6966 49 1 1.3142 -3.1257 5.1787 50 1 3.2944 -2.5231 3.8740 51 1 1.9543 -1.4504 3.3963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602784612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:20 Heat of formation + Delta-G solvation = 24.753803 kcal Electronic energy + Delta-G solvation = -29211.947886 eV Core-core repulsion = 25533.771365 eV Total energy + Delta-G solvation = -3678.176521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40488 -38.58825 -37.44706 -36.07090 -33.60174 -32.35538 -32.01724 -31.00016 -29.49897 -27.56784 -25.86155 -25.45574 -23.91981 -23.39169 -22.09176 -21.38346 -21.12325 -20.20851 -18.93029 -18.58067 -17.26650 -16.21898 -16.09115 -15.97010 -14.89704 -14.69627 -14.61839 -14.44971 -14.26087 -14.03144 -13.89782 -13.85739 -13.43046 -13.22387 -12.97246 -12.66764 -12.41581 -12.20075 -12.01166 -11.69270 -11.54149 -11.41466 -11.28327 -11.15515 -11.00126 -10.95239 -10.93597 -10.68582 -10.67834 -10.49094 -10.42902 -9.98014 -9.50935 -9.34155 -8.97191 -8.66726 -8.53304 -8.32938 -7.99908 -7.24002 -5.90913 -3.93233 2.83843 3.08597 3.32869 3.42303 3.44704 3.88424 4.37656 4.41378 4.46425 4.60415 4.70259 4.80775 4.96683 5.12825 5.18493 5.19754 5.28702 5.36539 5.41896 5.44481 5.56203 5.59192 5.62985 5.63526 5.68898 5.72446 5.80502 5.84973 5.94780 5.95742 6.11538 6.14445 6.28387 6.35034 6.38946 6.49016 6.54271 6.57089 6.65743 6.75415 6.77531 6.86934 6.93829 7.15146 7.31962 7.55088 7.69554 7.99492 8.11434 8.16400 8.47028 8.54258 9.00563 9.67215 11.11603 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.003739 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.566833 B = 7486.674801 C = 7953.519143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.499 5.499 3 C 0.036 3.964 4 C -0.121 4.121 5 C -0.119 4.119 6 C 0.048 3.952 7 H 0.075 0.925 8 C 0.520 3.480 9 O -0.528 6.528 10 N -0.610 5.610 11 C 0.120 3.880 12 C 0.050 3.950 13 N -0.494 5.494 14 C 0.105 3.895 15 C 0.069 3.931 16 C -0.472 4.472 17 H 0.054 0.946 18 C 0.091 3.909 19 N -0.878 5.878 20 Si 0.888 3.112 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.284 1.284 24 C -0.207 4.207 25 C -0.220 4.220 26 C 0.043 3.957 27 C 0.112 3.888 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.017 0.983 41 H -0.014 1.014 42 H 0.117 0.883 43 H 0.256 0.744 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.016 0.984 49 H 0.094 0.906 50 H 0.080 0.920 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 14.685 -6.988 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.223 5.223 3 C -0.092 4.092 4 C -0.159 4.159 5 C -0.158 4.158 6 C -0.064 4.064 7 H 0.093 0.907 8 C 0.307 3.693 9 O -0.403 6.403 10 N -0.344 5.344 11 C -0.002 4.002 12 C -0.079 4.079 13 N -0.217 5.217 14 C -0.022 4.022 15 C 0.069 3.931 16 C -0.509 4.509 17 H 0.072 0.928 18 C -0.112 4.112 19 N -0.515 5.515 20 Si 0.717 3.283 21 H -0.201 1.201 22 H -0.216 1.216 23 H -0.210 1.210 24 C -0.246 4.246 25 C -0.258 4.258 26 C -0.086 4.086 27 C -0.011 4.011 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.035 0.965 41 H 0.004 0.996 42 H 0.135 0.865 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.034 0.966 49 H 0.112 0.888 50 H 0.098 0.902 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.148 14.018 -8.104 16.334 hybrid contribution -0.363 0.411 0.848 1.010 sum -2.512 14.428 -7.256 16.344 Atomic orbital electron populations 1.22524 0.87346 1.02312 1.00846 1.64330 1.08167 1.14309 1.35484 1.23269 0.95093 0.89413 1.01384 1.22480 0.96742 0.98235 0.98490 1.22346 0.96291 0.97678 0.99457 1.22393 0.98194 0.93179 0.92636 0.90746 1.20275 0.77104 0.87152 0.84786 1.90652 1.50182 1.78064 1.21440 1.48245 1.70501 1.09374 1.06298 1.21712 0.99575 0.78641 1.00289 1.22366 0.96127 1.00054 0.89332 1.61597 1.54835 1.00174 1.05128 1.21757 0.88636 0.99171 0.92629 1.18944 0.92068 0.94155 0.87976 1.20300 0.91123 1.19749 1.19722 0.92823 1.24704 0.97584 0.95081 0.93859 1.69770 1.35062 1.15218 1.31471 0.86624 0.86449 0.77437 0.77787 1.20109 1.21593 1.20963 1.22967 1.02137 0.95511 1.03954 1.22961 1.04630 0.91978 1.06190 1.22467 0.94255 0.90766 1.01126 1.21933 1.01289 0.97046 0.80838 0.95366 0.90902 0.91315 0.93578 0.89671 0.90617 0.90398 0.90310 0.90348 0.90849 0.89652 0.89197 0.96482 0.99639 0.86517 0.93331 0.92075 0.90463 0.90865 0.92012 0.96633 0.88753 0.90197 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.40 60.07 0.56 0.76 16 2 N -0.50 -6.19 4.75 -232.16 -1.10 -7.30 16 3 C 0.04 0.34 6.56 -1.90 -0.01 0.32 16 4 C -0.12 -1.09 7.06 -24.87 -0.18 -1.27 16 5 C -0.12 -1.24 6.16 -25.38 -0.16 -1.39 16 6 C 0.05 0.60 1.96 -67.80 -0.13 0.47 16 7 H 0.07 0.85 6.21 -51.93 -0.32 0.53 16 8 C 0.52 8.40 6.75 -10.99 -0.07 8.33 16 9 O -0.53 -10.39 16.01 5.56 0.09 -10.30 16 10 N -0.61 -9.76 3.01 -172.49 -0.52 -10.28 16 11 C 0.12 2.08 6.59 -3.60 -0.02 2.06 16 12 C 0.05 0.93 5.60 -3.70 -0.02 0.91 16 13 N -0.49 -9.90 4.15 -234.35 -0.97 -10.87 16 14 C 0.10 2.31 4.05 -3.83 -0.02 2.30 16 15 C 0.07 1.61 1.58 -155.66 -0.25 1.36 16 16 C -0.47 -12.10 8.72 -34.44 -0.30 -12.41 16 17 H 0.05 1.41 7.83 -52.49 -0.41 1.00 16 18 C 0.09 2.32 5.18 -17.82 -0.09 2.23 16 19 N -0.88 -22.80 10.71 55.43 0.59 -22.20 16 20 Si 0.89 20.57 29.55 -169.99 -5.02 15.55 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 C -0.21 -4.53 9.96 -26.69 -0.27 -4.80 16 25 C -0.22 -4.51 8.37 -26.69 -0.22 -4.74 16 26 C 0.04 0.74 5.42 -3.72 -0.02 0.72 16 27 C 0.11 1.64 6.33 -3.62 -0.02 1.62 16 28 H 0.03 0.26 8.01 -51.93 -0.42 -0.16 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.37 7.96 -51.93 -0.41 -0.04 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.91 7.68 -51.93 -0.40 0.51 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.48 7.07 -51.93 -0.37 1.11 16 39 H 0.09 1.75 7.93 -51.93 -0.41 1.34 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 41 H -0.01 -0.31 7.99 -51.93 -0.42 -0.72 16 42 H 0.12 2.87 5.72 -51.93 -0.30 2.57 16 43 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 46 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 48 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.09 1.69 5.93 -51.93 -0.31 1.38 16 50 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 51 H 0.07 0.87 5.45 -51.93 -0.28 0.59 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -28.96 389.16 -11.38 -40.34 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -9.09 Total: 2.73 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.22 Total: -3.52 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -2.00 Total: -50.65 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.96 -11.38 -40.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602784612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.091 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds