Wall clock time and date at job start Fri Apr 10 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48531 * 110.99589 * 2 1 4 4 C 1.54939 * 103.22218 * 159.72309 * 3 2 1 5 5 C 1.54587 * 102.92051 * 322.58123 * 4 3 2 6 6 C 1.47897 * 110.99899 * 117.39540 * 2 1 3 7 7 H 1.09005 * 110.08127 * 333.60289 * 6 2 1 8 8 C 1.50703 * 109.91889 * 94.80529 * 6 2 1 9 9 O 1.21281 * 119.99832 * 17.58644 * 8 6 2 10 10 N 1.34773 * 119.99753 * 197.58902 * 8 6 2 11 11 C 1.47086 * 120.88051 * 179.97438 * 10 8 6 12 12 C 1.53235 * 108.52198 * 231.20722 * 11 10 8 13 13 N 1.46899 * 109.34309 * 306.16701 * 12 11 10 14 14 C 1.46900 * 111.00422 * 187.25390 * 13 12 11 15 15 C 1.52991 * 109.47188 * 163.79352 * 14 13 12 16 16 C 1.50701 * 115.55107 * 306.35826 * 15 14 13 17 17 H 1.07999 * 120.00439 * 144.24518 * 16 15 14 18 18 C 1.37876 * 119.99908 * 324.25465 * 16 15 14 19 19 N 1.31517 * 120.00223 * 351.20061 * 18 16 15 20 20 Si 1.86801 * 120.00057 * 171.21079 * 18 16 15 21 21 H 1.48502 * 109.46981 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47300 * 119.99862 * 20 18 16 23 23 H 1.48508 * 109.47036 * 239.99551 * 20 18 16 24 24 C 1.53004 * 117.49900 * 160.69139 * 15 14 13 25 25 C 1.53000 * 117.50039 * 92.03288 * 15 14 13 26 26 C 1.46902 * 111.26760 * 63.10492 * 13 12 11 27 27 C 1.47077 * 120.88553 * 0.02562 * 10 8 6 28 28 H 1.08994 * 109.47430 * 302.60458 * 1 2 3 29 29 H 1.08995 * 109.46993 * 62.60960 * 1 2 3 30 30 H 1.09005 * 109.46577 * 182.60163 * 1 2 3 31 31 H 1.08996 * 110.67279 * 41.28224 * 3 2 1 32 32 H 1.09005 * 110.66337 * 278.14986 * 3 2 1 33 33 H 1.09009 * 110.71669 * 204.22442 * 4 3 2 34 34 H 1.09000 * 110.72905 * 80.94753 * 4 3 2 35 35 H 1.09004 * 110.30882 * 263.04167 * 5 4 3 36 36 H 1.09002 * 110.39197 * 140.92405 * 5 4 3 37 37 H 1.08995 * 109.62757 * 111.49326 * 11 10 8 38 38 H 1.09001 * 109.78690 * 351.01078 * 11 10 8 39 39 H 1.09003 * 109.49323 * 186.21113 * 12 11 10 40 40 H 1.09001 * 109.51907 * 66.14527 * 12 11 10 41 41 H 1.08999 * 109.47046 * 283.79526 * 14 13 12 42 42 H 1.08994 * 109.46632 * 43.78960 * 14 13 12 43 43 H 0.96996 * 120.00498 * 185.00481 * 19 18 16 44 44 H 1.09000 * 117.49599 * 359.97438 * 24 15 14 45 45 H 1.08999 * 117.49858 * 145.01783 * 24 15 14 46 46 H 1.09006 * 117.49734 * 214.98212 * 25 15 14 47 47 H 1.08995 * 117.49815 * 359.97390 * 25 15 14 48 48 H 1.09005 * 109.49472 * 56.85368 * 26 13 12 49 49 H 1.08994 * 109.49604 * 176.93970 * 26 13 12 50 50 H 1.09000 * 109.62825 * 248.50354 * 27 10 8 51 51 H 1.09005 * 109.62903 * 8.88999 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 0.5227 5 6 3.2982 0.1054 1.5930 6 6 1.9991 -0.6353 1.2259 7 1 1.2771 -0.5432 2.0373 8 6 2.2939 -2.0899 0.9641 9 8 2.3971 -2.4921 -0.1755 10 7 2.4428 -2.9436 1.9962 11 6 2.7302 -4.3671 1.7630 12 6 1.7256 -5.2039 2.5621 13 7 1.7561 -4.7867 3.9703 14 6 0.9351 -5.6775 4.8012 15 6 1.2981 -5.4790 6.2742 16 6 2.7609 -5.6201 6.6079 17 1 3.2045 -4.9933 7.3673 18 6 3.5330 -6.5493 5.9434 19 7 2.9646 -7.4277 5.1467 20 14 5.3866 -6.5606 6.1751 21 1 5.7745 -5.4786 7.1154 22 1 5.8083 -7.8726 6.7284 23 1 6.0505 -6.3393 4.8653 24 6 0.2862 -5.9499 7.3208 25 6 0.4878 -4.4535 7.0695 26 6 1.3331 -3.3881 4.1210 27 6 2.3210 -2.4769 3.3856 28 1 -0.3634 0.5537 0.8657 29 1 -0.3633 0.4728 -0.9124 30 1 -0.3633 -1.0267 0.0467 31 1 1.4237 2.0205 0.6728 32 1 2.0041 1.7976 -1.0096 33 1 3.8122 2.1353 0.9715 34 1 4.1116 0.8836 -0.2788 35 1 3.2136 0.5487 2.5852 36 1 4.1468 -0.5778 1.5557 37 1 3.7430 -4.5953 2.0950 38 1 2.6332 -4.5940 0.7013 39 1 1.9914 -6.2585 2.4894 40 1 0.7240 -5.0527 2.1596 41 1 -0.1191 -5.4441 4.6522 42 1 1.1216 -6.7132 4.5174 43 1 3.4976 -8.1265 4.7362 44 1 -0.6383 -6.4007 6.9598 45 1 0.6786 -6.3614 8.2507 46 1 1.0127 -3.8810 7.8343 47 1 -0.3036 -3.9198 6.5432 48 1 0.3370 -3.2615 3.6966 49 1 1.3142 -3.1257 5.1787 50 1 3.2944 -2.5231 3.8740 51 1 1.9543 -1.4504 3.3963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602784612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:17 Heat of formation + Delta-G solvation = 7.108018 kcal Electronic energy + Delta-G solvation = -29212.713065 eV Core-core repulsion = 25533.771365 eV Total energy + Delta-G solvation = -3678.941699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.56440 -39.83093 -38.78864 -37.62528 -35.05233 -33.96337 -33.16166 -32.30971 -30.54011 -28.97931 -27.38435 -26.65285 -25.43262 -24.74460 -23.27652 -22.80588 -22.10384 -21.45374 -20.75574 -19.80622 -18.48567 -17.88681 -17.26820 -16.99061 -16.57039 -16.03312 -15.94720 -15.78962 -15.71981 -15.50280 -15.07599 -14.94515 -14.63669 -14.50848 -14.38098 -13.95435 -13.60635 -13.42258 -13.15926 -12.97555 -12.85378 -12.81063 -12.58493 -12.43217 -12.33092 -12.22328 -12.19172 -12.17783 -12.13036 -11.98033 -11.76102 -11.72267 -11.12157 -10.86119 -10.72779 -10.43850 -9.86211 -9.70272 -9.38437 -8.79258 -7.85652 -5.92773 1.46009 1.52458 1.58260 1.61464 1.88756 2.54635 3.00373 3.08081 3.33665 3.42995 3.60731 3.77773 3.85917 3.86664 4.06882 4.09710 4.20451 4.24472 4.32590 4.37289 4.40134 4.46120 4.48087 4.52164 4.58504 4.65787 4.72419 4.76568 4.80035 4.85362 4.86858 4.91710 4.93459 4.99610 4.99752 5.00817 5.10168 5.16301 5.21265 5.23822 5.39260 5.48698 5.60241 5.71311 5.79429 6.01173 6.09638 6.40389 6.48416 6.55089 6.70494 7.05575 7.20940 7.68735 9.14112 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.003739 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.566833 B = 7486.674801 C = 7953.519143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.530 5.530 3 C 0.038 3.962 4 C -0.118 4.118 5 C -0.119 4.119 6 C 0.052 3.948 7 H 0.092 0.908 8 C 0.517 3.483 9 O -0.571 6.571 10 N -0.610 5.610 11 C 0.128 3.872 12 C 0.060 3.940 13 N -0.510 5.510 14 C 0.117 3.883 15 C 0.043 3.957 16 C -0.483 4.483 17 H 0.042 0.958 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.934 3.066 21 H -0.274 1.274 22 H -0.291 1.291 23 H -0.287 1.287 24 C -0.212 4.212 25 C -0.192 4.192 26 C 0.045 3.955 27 C 0.119 3.881 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.018 0.982 41 H -0.010 1.010 42 H 0.087 0.913 43 H 0.254 0.746 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.021 0.979 49 H 0.091 0.909 50 H 0.075 0.925 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 17.628 -6.406 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.255 5.255 3 C -0.089 4.089 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.059 4.059 7 H 0.109 0.891 8 C 0.305 3.695 9 O -0.449 6.449 10 N -0.344 5.344 11 C 0.005 3.995 12 C -0.069 4.069 13 N -0.233 5.233 14 C -0.010 4.010 15 C 0.042 3.958 16 C -0.520 4.520 17 H 0.060 0.940 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.762 3.238 21 H -0.199 1.199 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.251 4.251 25 C -0.229 4.229 26 C -0.084 4.084 27 C -0.004 4.004 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.008 0.992 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.039 0.961 49 H 0.110 0.890 50 H 0.093 0.907 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.587 16.985 -7.499 18.746 hybrid contribution -0.252 -0.522 0.661 0.880 sum -2.839 16.462 -6.838 18.051 Atomic orbital electron populations 1.22506 0.86631 1.01365 1.02301 1.64259 1.09150 1.16342 1.35741 1.23341 0.95180 0.88024 1.02326 1.22498 0.96468 0.98898 0.97753 1.22414 0.94352 0.97568 1.01377 1.22399 0.99740 0.90453 0.93343 0.89074 1.21079 0.75743 0.88686 0.83944 1.90627 1.52059 1.79085 1.23124 1.48312 1.70218 1.08689 1.07148 1.21473 0.98529 0.79887 0.99639 1.22221 0.96361 0.99320 0.88988 1.61531 1.54959 1.01486 1.05341 1.21457 0.89015 0.98101 0.92449 1.18988 0.91285 0.96704 0.88777 1.20452 0.92675 1.19440 1.19469 0.93975 1.25159 1.00083 0.95089 0.94009 1.69896 1.35656 1.15482 1.31996 0.85910 0.83390 0.77148 0.77306 1.19875 1.21784 1.21378 1.22964 1.02042 0.97022 1.03073 1.22922 1.03847 0.91143 1.04963 1.22496 0.95217 0.89332 1.01373 1.21986 1.00576 0.98322 0.79475 0.93414 0.89874 0.93487 0.91470 0.89211 0.87829 0.91996 0.87499 0.92119 0.91964 0.90128 0.90966 0.96410 0.99201 0.89480 0.93672 0.91125 0.91383 0.90503 0.89870 0.96059 0.89044 0.90691 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.40 127.69 1.20 1.59 16 2 N -0.53 -12.05 4.75 -888.43 -4.22 -16.27 16 3 C 0.04 0.59 6.56 86.65 0.57 1.16 16 4 C -0.12 -1.78 7.06 31.80 0.22 -1.55 16 5 C -0.12 -2.11 6.16 31.47 0.19 -1.92 16 6 C 0.05 1.19 1.96 44.31 0.09 1.27 16 7 H 0.09 1.74 6.21 -2.38 -0.01 1.72 16 8 C 0.52 16.26 6.75 87.66 0.59 16.85 16 9 O -0.57 -22.69 16.01 -3.03 -0.05 -22.73 16 10 N -0.61 -19.02 3.01 -818.02 -2.46 -21.48 16 11 C 0.13 4.50 6.59 86.35 0.57 5.07 16 12 C 0.06 2.27 5.60 86.38 0.48 2.75 16 13 N -0.51 -20.29 4.15 -895.36 -3.71 -24.00 16 14 C 0.12 5.17 4.05 86.30 0.35 5.51 16 15 C 0.04 1.97 1.58 -52.93 -0.08 1.89 16 16 C -0.48 -24.70 8.72 25.60 0.22 -24.48 16 17 H 0.04 2.20 7.83 -2.91 -0.02 2.18 16 18 C 0.06 2.97 5.18 84.65 0.44 3.41 16 19 N -0.89 -47.12 10.71 21.45 0.23 -46.89 16 20 Si 0.93 42.42 29.55 68.60 2.03 44.44 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 C -0.21 -9.07 9.96 30.62 0.30 -8.77 16 25 C -0.19 -7.43 8.37 30.62 0.26 -7.18 16 26 C 0.04 1.45 5.42 86.37 0.47 1.92 16 27 C 0.12 3.22 6.33 86.34 0.55 3.77 16 28 H 0.05 0.71 8.01 -2.39 -0.02 0.70 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.07 16 31 H 0.07 0.78 7.96 -2.39 -0.02 0.76 16 32 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.08 2.90 7.07 -2.39 -0.02 2.88 16 39 H 0.07 2.94 7.93 -2.39 -0.02 2.92 16 40 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 41 H -0.01 -0.42 7.99 -2.39 -0.02 -0.44 16 42 H 0.09 4.37 5.72 -2.39 -0.01 4.36 16 43 H 0.25 13.09 8.32 -92.71 -0.77 12.32 16 44 H 0.07 2.84 8.14 -2.39 -0.02 2.83 16 45 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 46 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 47 H 0.08 2.87 8.03 -2.39 -0.02 2.85 16 48 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.09 3.05 5.93 -2.39 -0.01 3.03 16 50 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 51 H 0.11 2.20 5.45 -2.38 -0.01 2.18 16 Total: -1.00 -62.98 389.16 -0.88 -63.86 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.89 Total: 21.76 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 6.42 Total: 1.30 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -10.17 Total: -108.64 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -62.98 -0.88 -63.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602784612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.971 kcal (2) G-P(sol) polarization free energy of solvation -62.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds