Wall clock time and date at job start Fri Apr 10 2020 18:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86806 * 119.99775 * 2 1 4 4 H 1.48496 * 109.46979 * 269.99791 * 3 2 1 5 5 H 1.48498 * 109.47163 * 29.99965 * 3 2 1 6 6 H 1.48498 * 109.46703 * 150.00186 * 3 2 1 7 7 C 1.38797 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00398 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99832 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00154 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47368 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99902 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00110 * 179.97438 * 11 10 9 14 14 C 1.46930 * 120.63266 * 5.66350 * 13 11 10 15 15 C 1.53187 * 108.77752 * 126.38965 * 14 13 11 16 16 C 1.53040 * 109.31534 * 54.63719 * 15 14 13 17 17 C 1.53040 * 109.53528 * 298.63561 * 16 15 14 18 18 C 1.46923 * 120.63386 * 185.66182 * 13 11 10 19 19 H 1.08996 * 109.59048 * 113.81856 * 18 13 11 20 20 C 1.53003 * 109.69990 * 353.46569 * 18 13 11 21 21 S 1.81402 * 109.46963 * 181.63558 * 20 18 13 22 22 N 1.65594 * 104.44850 * 185.30452 * 21 20 18 23 23 O 1.42102 * 110.54407 * 296.92795 * 21 20 18 24 24 O 1.42095 * 110.54502 * 73.67910 * 21 20 18 25 25 H 0.97007 * 120.00141 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47231 * 59.99369 * 10 9 7 27 27 H 1.08999 * 109.46950 * 300.00195 * 10 9 7 28 28 H 1.09001 * 109.58323 * 6.59917 * 14 13 11 29 29 H 1.08999 * 109.70545 * 246.25298 * 14 13 11 30 30 H 1.08997 * 109.49508 * 294.68133 * 15 14 13 31 31 H 1.09005 * 109.49467 * 174.59016 * 15 14 13 32 32 H 1.08999 * 109.46083 * 178.61610 * 16 15 14 33 33 H 1.09000 * 109.45800 * 58.65054 * 16 15 14 34 34 H 1.09004 * 109.49712 * 301.41378 * 17 16 15 35 35 H 1.08997 * 109.52156 * 181.33068 * 17 16 15 36 36 H 1.08993 * 109.47226 * 301.63412 * 20 18 13 37 37 H 1.08999 * 109.46871 * 61.63724 * 20 18 13 38 38 H 0.97002 * 120.00534 * 0.02562 * 22 21 20 39 39 H 0.97007 * 120.00417 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7722 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2325 0.0008 12 8 6.3441 -2.2962 0.0005 13 7 6.0457 -4.4946 0.0011 14 6 5.1301 -5.6369 -0.1232 15 6 5.5987 -6.5205 -1.2834 16 6 7.0626 -6.9095 -1.0642 17 6 7.9287 -5.6480 -1.0373 18 6 7.4864 -4.7544 0.1258 19 1 7.6863 -5.2592 1.0709 20 6 8.2550 -3.4323 0.0779 21 16 10.0354 -3.7638 0.1836 22 7 10.7306 -2.2634 0.2695 23 8 10.3566 -4.3707 1.4277 24 8 10.5157 -4.3030 -1.0402 25 1 -0.4851 0.8401 0.0004 26 1 3.6439 -3.4314 -0.8893 27 1 3.6433 -3.4317 0.8906 28 1 4.1210 -5.2763 -0.3229 29 1 5.1353 -6.2144 0.8013 30 1 5.5045 -5.9712 -2.2201 31 1 4.9855 -7.4208 -1.3258 32 1 7.3913 -7.5584 -1.8759 33 1 7.1600 -7.4371 -0.1154 34 1 7.8126 -5.1069 -1.9764 35 1 8.9741 -5.9267 -0.9049 36 1 8.0361 -2.9185 -0.8581 37 1 7.9518 -2.8053 0.9163 38 1 10.1738 -1.4692 0.2558 39 1 11.6948 -2.1785 0.3344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694977736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:07 Heat of formation + Delta-G solvation = -99.723849 kcal Electronic energy + Delta-G solvation = -23741.509070 eV Core-core repulsion = 20130.913670 eV Total energy + Delta-G solvation = -3610.595400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.085 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -40.60547 -37.48540 -37.07291 -36.02562 -33.74821 -33.31001 -32.98776 -32.51124 -29.30946 -28.05037 -25.69559 -24.88329 -22.85472 -21.27668 -19.63378 -19.37737 -18.00000 -17.65888 -17.46405 -16.67835 -16.25005 -15.97032 -15.63349 -15.11589 -14.96712 -14.76770 -14.49402 -14.30557 -13.81412 -13.55895 -13.29309 -13.00165 -12.83981 -12.46896 -12.24669 -12.20657 -12.04421 -12.00768 -11.64638 -11.45630 -11.34451 -11.24115 -11.08148 -10.92789 -10.89296 -10.67624 -10.56908 -9.92721 -9.07964 -8.99527 -8.73965 -8.60060 -7.01344 -6.36026 -4.08896 0.11988 2.53176 2.67921 2.71932 3.04190 3.26218 3.42041 3.43967 3.51910 4.02740 4.21721 4.25500 4.40663 4.51154 4.59681 4.69379 4.74909 4.83845 5.02224 5.03265 5.12031 5.22744 5.33525 5.47265 5.54363 5.62606 5.63842 5.65260 5.76717 5.77193 5.86810 5.89542 6.04546 6.35933 6.87353 7.25456 7.86814 8.21003 8.34380 9.09793 10.73218 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.003810 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.749223 B = 7347.522369 C = 8696.070515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.097 3.903 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.539 3.461 12 O -0.516 6.516 13 N -0.607 5.607 14 C 0.104 3.896 15 C -0.138 4.138 16 C -0.116 4.116 17 C -0.161 4.161 18 C 0.167 3.833 19 H 0.089 0.911 20 C -0.595 4.595 21 S 2.590 3.410 22 N -1.250 6.250 23 O -0.973 6.973 24 O -0.969 6.969 25 H 0.271 0.729 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.416 0.584 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.498 -11.850 -0.735 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.327 3.673 12 O -0.392 6.392 13 N -0.344 5.344 14 C -0.018 4.018 15 C -0.176 4.176 16 C -0.154 4.154 17 C -0.200 4.200 18 C 0.062 3.938 19 H 0.107 0.893 20 C -0.725 4.725 21 S 2.682 3.318 22 N -0.923 5.923 23 O -0.962 6.962 24 O -0.958 6.958 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.173 0.827 37 H 0.177 0.823 38 H 0.242 0.758 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 17.853 -11.399 -0.731 21.194 hybrid contribution -1.234 0.546 -0.055 1.350 sum 16.619 -10.853 -0.786 19.864 Atomic orbital electron populations 1.69933 1.05931 1.27843 1.47820 1.24708 0.94439 0.98950 0.93127 0.86733 0.81842 0.83328 0.79901 1.19221 1.19899 1.15995 1.22287 0.88107 0.97554 1.59058 0.89375 1.84713 1.09564 0.99799 1.97437 1.23380 0.93870 1.04481 1.05770 1.20330 0.90704 0.81668 0.74569 1.90648 1.57266 1.42523 1.48803 1.47994 1.05648 1.06259 1.74464 1.21854 0.93855 0.87210 0.98922 1.21959 0.96572 1.00033 0.99046 1.21470 0.94610 0.96589 1.02728 1.22456 1.00527 0.97438 0.99532 1.20769 0.81462 0.92121 0.99456 0.89301 1.30886 1.19499 1.06597 1.15567 1.05584 0.78214 0.73148 0.74839 1.53037 1.18482 1.25910 1.94906 1.93593 1.82752 1.74929 1.44903 1.93596 1.78736 1.76836 1.46673 0.91866 0.88422 0.88305 0.88659 0.90883 0.90993 0.90187 0.90901 0.91324 0.89705 0.90039 0.82709 0.82283 0.75752 0.75431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.86 13.97 55.49 0.78 -25.08 16 2 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 3 Si 0.86 21.02 27.74 -169.99 -4.72 16.31 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.24 -5.72 6.74 56.52 0.38 -5.34 16 7 C -0.52 -14.47 10.04 30.94 0.31 -14.16 16 8 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 9 S -0.14 -3.36 18.55 -107.50 -1.99 -5.36 16 10 C -0.12 -2.22 4.57 36.01 0.16 -2.06 16 11 C 0.54 8.55 7.63 -10.99 -0.08 8.47 16 12 O -0.52 -9.11 11.28 5.56 0.06 -9.04 16 13 N -0.61 -7.36 2.97 -165.22 -0.49 -7.85 16 14 C 0.10 0.98 6.32 -3.71 -0.02 0.95 16 15 C -0.14 -1.09 6.08 -26.61 -0.16 -1.25 16 16 C -0.12 -0.92 5.88 -26.69 -0.16 -1.07 16 17 C -0.16 -1.58 4.67 -26.61 -0.12 -1.70 16 18 C 0.17 1.83 3.03 -67.60 -0.20 1.62 16 19 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 20 C -0.59 -6.50 4.01 37.16 0.15 -6.35 16 21 S 2.59 27.27 5.27 -107.50 -0.57 26.70 16 22 N -1.25 -9.96 9.43 60.35 0.57 -9.39 16 23 O -0.97 -13.26 18.10 -57.54 -1.04 -14.30 16 24 O -0.97 -12.63 16.27 -57.54 -0.94 -13.57 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.10 1.63 7.46 -51.92 -0.39 1.24 16 27 H 0.10 1.66 8.12 -51.92 -0.42 1.24 16 28 H 0.10 0.91 5.96 -51.93 -0.31 0.60 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.79 6.12 -51.93 -0.32 0.48 16 36 H 0.15 1.76 6.91 -51.93 -0.36 1.40 16 37 H 0.16 1.82 6.60 -51.92 -0.34 1.48 16 38 H 0.42 2.60 8.83 -34.47 -0.30 2.30 16 39 H 0.42 2.75 8.96 -34.47 -0.31 2.44 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -36.32 334.56 -8.81 -45.13 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.29 Total: 4.32 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.23 Total: -12.90 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.85 Total: -42.33 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.92 Total: -36.92 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.72 Total: 16.31 kcal Atomic # 16 Polarization: 23.90 SS G_CDS: -2.56 Total: 21.34 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.32 -8.81 -45.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694977736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.592 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds