Wall clock time and date at job start Fri Apr 10 2020 18:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86806 * 119.99775 * 2 1 4 4 H 1.48496 * 109.46979 * 269.99791 * 3 2 1 5 5 H 1.48498 * 109.47163 * 29.99965 * 3 2 1 6 6 H 1.48498 * 109.46703 * 150.00186 * 3 2 1 7 7 C 1.38797 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00398 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99832 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00154 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47368 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99902 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00110 * 179.97438 * 11 10 9 14 14 C 1.46930 * 120.63266 * 5.66350 * 13 11 10 15 15 C 1.53187 * 108.77752 * 126.38965 * 14 13 11 16 16 C 1.53040 * 109.31534 * 54.63719 * 15 14 13 17 17 C 1.53040 * 109.53528 * 298.63561 * 16 15 14 18 18 C 1.46923 * 120.63386 * 185.66182 * 13 11 10 19 19 H 1.08996 * 109.59048 * 113.81856 * 18 13 11 20 20 C 1.53003 * 109.69990 * 353.46569 * 18 13 11 21 21 S 1.81402 * 109.46963 * 181.63558 * 20 18 13 22 22 N 1.65594 * 104.44850 * 185.30452 * 21 20 18 23 23 O 1.42102 * 110.54407 * 296.92795 * 21 20 18 24 24 O 1.42095 * 110.54502 * 73.67910 * 21 20 18 25 25 H 0.97007 * 120.00141 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47231 * 59.99369 * 10 9 7 27 27 H 1.08999 * 109.46950 * 300.00195 * 10 9 7 28 28 H 1.09001 * 109.58323 * 6.59917 * 14 13 11 29 29 H 1.08999 * 109.70545 * 246.25298 * 14 13 11 30 30 H 1.08997 * 109.49508 * 294.68133 * 15 14 13 31 31 H 1.09005 * 109.49467 * 174.59016 * 15 14 13 32 32 H 1.08999 * 109.46083 * 178.61610 * 16 15 14 33 33 H 1.09000 * 109.45800 * 58.65054 * 16 15 14 34 34 H 1.09004 * 109.49712 * 301.41378 * 17 16 15 35 35 H 1.08997 * 109.52156 * 181.33068 * 17 16 15 36 36 H 1.08993 * 109.47226 * 301.63412 * 20 18 13 37 37 H 1.08999 * 109.46871 * 61.63724 * 20 18 13 38 38 H 0.97002 * 120.00534 * 0.02562 * 22 21 20 39 39 H 0.97007 * 120.00417 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7722 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2325 0.0008 12 8 6.3441 -2.2962 0.0005 13 7 6.0457 -4.4946 0.0011 14 6 5.1301 -5.6369 -0.1232 15 6 5.5987 -6.5205 -1.2834 16 6 7.0626 -6.9095 -1.0642 17 6 7.9287 -5.6480 -1.0373 18 6 7.4864 -4.7544 0.1258 19 1 7.6863 -5.2592 1.0709 20 6 8.2550 -3.4323 0.0779 21 16 10.0354 -3.7638 0.1836 22 7 10.7306 -2.2634 0.2695 23 8 10.3566 -4.3707 1.4277 24 8 10.5157 -4.3030 -1.0402 25 1 -0.4851 0.8401 0.0004 26 1 3.6439 -3.4314 -0.8893 27 1 3.6433 -3.4317 0.8906 28 1 4.1210 -5.2763 -0.3229 29 1 5.1353 -6.2144 0.8013 30 1 5.5045 -5.9712 -2.2201 31 1 4.9855 -7.4208 -1.3258 32 1 7.3913 -7.5584 -1.8759 33 1 7.1600 -7.4371 -0.1154 34 1 7.8126 -5.1069 -1.9764 35 1 8.9741 -5.9267 -0.9049 36 1 8.0361 -2.9185 -0.8581 37 1 7.9518 -2.8053 0.9163 38 1 10.1738 -1.4692 0.2558 39 1 11.6948 -2.1785 0.3344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694977736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:06 Heat of formation + Delta-G solvation = -128.641281 kcal Electronic energy + Delta-G solvation = -23742.763024 eV Core-core repulsion = 20130.913670 eV Total energy + Delta-G solvation = -3611.849354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.085 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.64536 -38.49411 -38.04705 -37.00132 -34.68891 -34.65964 -34.04578 -33.82967 -30.58887 -28.92132 -27.84559 -25.72900 -23.72007 -22.13829 -20.55273 -20.47503 -19.51224 -18.78086 -18.39709 -17.68345 -17.23600 -17.10536 -16.96531 -16.67557 -16.03209 -15.73306 -15.52746 -15.35565 -15.00940 -14.92846 -14.48278 -14.32844 -13.84280 -13.54768 -13.33267 -13.27713 -13.17124 -13.04204 -13.02929 -12.91710 -12.66600 -12.52814 -12.23251 -11.95215 -11.86509 -11.62774 -11.62392 -11.29251 -11.16813 -10.52352 -10.16655 -9.71133 -8.98238 -8.51196 -6.21706 -0.75558 0.97395 1.31953 1.45032 1.45786 1.53122 1.90101 2.00383 2.24687 2.58548 2.68631 2.87540 3.17772 3.35664 3.58995 3.74002 3.77432 3.96461 4.03856 4.12711 4.19131 4.29479 4.42238 4.49035 4.63979 4.77682 4.81293 4.84172 4.97413 5.11377 5.17047 5.24842 5.40235 5.46340 5.70715 6.11954 6.18500 6.31065 6.93971 7.01579 8.61283 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.003810 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.749223 B = 7347.522369 C = 8696.070515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.233 1.233 7 C -0.530 4.530 8 H 0.060 0.940 9 S -0.166 6.166 10 C -0.112 4.112 11 C 0.537 3.463 12 O -0.540 6.540 13 N -0.596 5.596 14 C 0.093 3.907 15 C -0.133 4.133 16 C -0.116 4.116 17 C -0.163 4.163 18 C 0.157 3.843 19 H 0.106 0.894 20 C -0.592 4.592 21 S 2.619 3.381 22 N -1.242 6.242 23 O -1.001 7.001 24 O -0.993 6.993 25 H 0.276 0.724 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.425 0.575 39 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.864 -12.737 -0.643 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.156 1.156 7 C -0.678 4.678 8 H 0.079 0.921 9 S 0.061 5.939 10 C -0.263 4.263 11 C 0.325 3.675 12 O -0.419 6.419 13 N -0.330 5.330 14 C -0.028 4.028 15 C -0.171 4.171 16 C -0.154 4.154 17 C -0.201 4.201 18 C 0.052 3.948 19 H 0.123 0.877 20 C -0.722 4.722 21 S 2.712 3.288 22 N -0.919 5.919 23 O -0.990 6.990 24 O -0.982 6.982 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.254 0.746 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 19.229 -12.322 -0.640 22.847 hybrid contribution -1.625 0.665 -0.091 1.759 sum 17.604 -11.656 -0.731 21.126 Atomic orbital electron populations 1.70020 1.07436 1.29018 1.49176 1.25570 0.95226 1.02295 0.92868 0.85862 0.80796 0.79508 0.80165 1.18764 1.18661 1.15636 1.22476 0.90495 0.96593 1.58239 0.92129 1.84539 1.06158 1.05656 1.97552 1.23363 0.96168 0.99778 1.06949 1.19959 0.89445 0.82838 0.75252 1.90648 1.57300 1.43623 1.50313 1.47961 1.06742 1.05595 1.72747 1.22175 0.93159 0.86660 1.00824 1.21945 0.97039 1.00449 0.97665 1.21522 0.93994 0.95769 1.04077 1.22479 1.01044 0.98111 0.98476 1.21056 0.80434 0.92408 1.00876 0.87663 1.30796 1.19626 1.06698 1.15123 1.04552 0.77533 0.73107 0.73635 1.52778 1.19153 1.25426 1.94579 1.93559 1.83208 1.76149 1.46109 1.93567 1.79170 1.77872 1.47576 0.91417 0.87281 0.87189 0.88958 0.88621 0.92106 0.87815 0.89691 0.89870 0.90591 0.89971 0.83221 0.82710 0.74595 0.74404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.81 13.97 21.65 0.30 -54.51 16 2 C 0.05 2.61 5.50 84.86 0.47 3.07 16 3 Si 0.91 43.35 27.74 68.60 1.90 45.26 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.23 -10.82 6.74 99.48 0.67 -10.14 16 7 C -0.53 -29.76 10.04 67.95 0.68 -29.08 16 8 H 0.06 3.61 8.03 -2.91 -0.02 3.58 16 9 S -0.17 -7.82 18.55 -56.49 -1.05 -8.87 16 10 C -0.11 -3.89 4.57 71.24 0.33 -3.56 16 11 C 0.54 16.40 7.63 87.66 0.67 17.07 16 12 O -0.54 -18.61 11.28 -3.03 -0.03 -18.64 16 13 N -0.60 -13.31 2.97 -795.03 -2.36 -15.67 16 14 C 0.09 1.51 6.32 86.36 0.55 2.05 16 15 C -0.13 -1.72 6.08 30.67 0.19 -1.54 16 16 C -0.12 -1.49 5.88 30.62 0.18 -1.31 16 17 C -0.16 -2.88 4.67 30.67 0.14 -2.74 16 18 C 0.16 3.14 3.03 44.98 0.14 3.28 16 19 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 20 C -0.59 -12.29 4.01 71.98 0.29 -12.00 16 21 S 2.62 52.23 5.27 -56.49 -0.30 51.93 16 22 N -1.24 -18.14 9.43 37.02 0.35 -17.79 16 23 O -1.00 -26.09 18.10 -127.65 -2.31 -28.40 16 24 O -0.99 -24.83 16.27 -127.65 -2.08 -26.90 16 25 H 0.28 15.27 8.31 -92.70 -0.77 14.50 16 26 H 0.11 3.54 7.46 -2.39 -0.02 3.52 16 27 H 0.11 3.58 8.12 -2.40 -0.02 3.56 16 28 H 0.09 1.56 5.96 -2.39 -0.01 1.54 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 1.47 8.14 -2.38 -0.02 1.46 16 35 H 0.08 1.47 6.12 -2.39 -0.01 1.45 16 36 H 0.15 3.31 6.91 -2.39 -0.02 3.30 16 37 H 0.16 3.40 6.60 -2.39 -0.02 3.39 16 38 H 0.43 4.74 8.83 -96.74 -0.85 3.89 16 39 H 0.42 4.98 8.96 -96.74 -0.87 4.11 16 Total: -1.00 -77.62 334.56 -2.62 -80.24 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.67 Total: 18.10 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 3.62 Total: -24.75 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -1.71 Total: -87.96 kcal Atomic # 8 Polarization: -69.52 SS G_CDS: -4.42 Total: -73.94 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.90 Total: 45.26 kcal Atomic # 16 Polarization: 44.41 SS G_CDS: -1.35 Total: 43.06 kcal Total: -77.62 -2.62 -80.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694977736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.399 kcal (2) G-P(sol) polarization free energy of solvation -77.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds