Wall clock time and date at job start Fri Apr 10 2020 18:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00075 * 2 1 4 4 H 1.48500 * 109.47024 * 269.99868 * 3 2 1 5 5 H 1.48493 * 109.47015 * 30.00352 * 3 2 1 6 6 H 1.48510 * 109.46809 * 149.99966 * 3 2 1 7 7 C 1.38804 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99946 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99685 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99641 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46826 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00313 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99722 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99791 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47158 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47221 * 179.97438 * 15 14 13 17 17 H 1.09003 * 109.73198 * 305.40329 * 16 15 14 18 18 C 1.53182 * 109.60136 * 184.99813 * 16 15 14 19 19 N 1.46476 * 109.89653 * 177.60516 * 18 16 15 20 20 C 1.46467 * 112.46265 * 71.96602 * 19 18 16 21 21 C 1.53184 * 109.89980 * 288.03874 * 20 19 18 22 22 S 1.81812 * 109.60039 * 65.80801 * 16 15 14 23 23 O 1.42098 * 108.70283 * 57.81943 * 22 16 15 24 24 O 1.42095 * 108.70332 * 286.33038 * 22 16 15 25 25 H 0.96997 * 119.99857 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47150 * 60.00059 * 10 9 7 27 27 H 1.08993 * 109.47321 * 300.00130 * 10 9 7 28 28 H 0.97000 * 120.00238 * 359.97438 * 13 11 10 29 29 H 1.09001 * 109.47457 * 59.99553 * 14 13 11 30 30 H 1.09001 * 109.46783 * 299.99420 * 14 13 11 31 31 H 1.09001 * 109.47180 * 59.99533 * 15 14 13 32 32 H 1.08993 * 109.47028 * 299.99764 * 15 14 13 33 33 H 1.09000 * 109.39960 * 57.48089 * 18 16 15 34 34 H 1.08996 * 109.39971 * 297.73758 * 18 16 15 35 35 H 1.00904 * 110.99584 * 196.99666 * 19 18 16 36 36 H 1.09006 * 109.39800 * 48.16585 * 20 19 18 37 37 H 1.08997 * 109.40394 * 167.89980 * 20 19 18 38 38 H 1.08996 * 109.60280 * 182.39538 * 21 20 19 39 39 H 1.09004 * 109.59509 * 302.87614 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5730 -3.2326 -0.0010 12 8 6.3440 -2.2964 -0.0015 13 7 6.0456 -4.4948 -0.0016 14 6 7.4906 -4.7359 -0.0021 15 6 7.7563 -6.2427 -0.0020 16 6 9.2655 -6.4945 -0.0032 17 1 9.7256 -5.9689 -0.8400 18 6 9.5356 -7.9970 -0.1288 19 7 10.9788 -8.2408 -0.1880 20 6 11.6365 -8.0229 1.1024 21 6 11.6863 -6.5242 1.4157 22 16 9.9839 -5.9022 1.5584 23 8 9.3436 -6.5702 2.6368 24 8 10.0144 -4.4817 1.5361 25 1 -0.4850 0.8400 -0.0004 26 1 3.6432 -3.4318 -0.8896 27 1 3.6439 -3.4314 0.8903 28 1 5.4290 -5.2436 -0.0008 29 1 7.9339 -4.2891 0.8878 30 1 7.9332 -4.2886 -0.8922 31 1 7.3129 -6.6898 -0.8917 32 1 7.3138 -6.6895 0.8882 33 1 9.0672 -8.3744 -1.0379 34 1 9.1163 -8.5137 0.7344 35 1 11.1751 -9.1649 -0.5425 36 1 11.0788 -8.5379 1.8846 37 1 12.6514 -8.4185 1.0629 38 1 12.2141 -6.3646 2.3559 39 1 12.2012 -5.9994 0.6109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721727232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:15 Heat of formation + Delta-G solvation = -103.320879 kcal Electronic energy + Delta-G solvation = -22647.723968 eV Core-core repulsion = 19036.972589 eV Total energy + Delta-G solvation = -3610.751379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.085 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -39.34311 -38.49857 -37.27966 -36.49885 -35.78946 -33.42038 -32.40726 -31.02075 -29.70648 -27.62431 -25.58433 -24.20862 -22.49684 -22.25189 -20.47367 -19.18244 -17.91977 -17.69319 -17.41123 -16.40357 -16.32708 -16.20414 -15.99740 -15.47003 -15.39361 -14.93093 -14.73819 -14.20393 -13.88494 -13.52952 -13.39612 -13.18361 -12.99285 -12.76892 -12.67521 -12.53366 -12.43159 -12.34472 -12.22499 -11.78760 -11.57415 -11.22953 -11.07386 -10.97408 -10.57499 -10.46403 -9.82428 -9.49972 -9.42790 -9.00197 -8.94677 -8.45991 -6.88112 -6.25949 -3.97328 -0.43952 2.21621 2.74534 3.01637 3.05685 3.22793 3.34388 3.37444 3.54938 3.58233 3.65824 3.82045 4.07224 4.18941 4.35370 4.36983 4.43214 4.48224 4.60219 4.67636 4.79584 4.97700 5.03991 5.09537 5.13206 5.17147 5.25424 5.34884 5.60640 5.80431 5.80906 6.04401 6.04654 6.42503 6.49551 7.61205 7.97181 8.44504 8.52464 9.20417 10.83238 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.036811 B = 0.002371 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.468143 B =11804.729112 C =12160.372073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.234 1.234 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.528 3.472 12 O -0.513 6.513 13 N -0.736 5.736 14 C 0.097 3.903 15 C -0.118 4.118 16 C -0.555 4.555 17 H 0.151 0.849 18 C 0.072 3.928 19 N -0.704 5.704 20 C 0.067 3.933 21 C -0.605 4.605 22 S 2.405 3.595 23 O -0.934 6.934 24 O -0.924 6.924 25 H 0.270 0.730 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.400 0.600 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.365 0.635 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.137 0.863 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.543 -23.119 -0.423 33.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.158 1.158 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.314 3.686 12 O -0.387 6.387 13 N -0.391 5.391 14 C -0.027 4.027 15 C -0.157 4.157 16 C -0.666 4.666 17 H 0.169 0.831 18 C -0.058 4.058 19 N -0.338 5.338 20 C -0.064 4.064 21 C -0.734 4.734 22 S 2.586 3.414 23 O -0.931 6.931 24 O -0.921 6.921 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.235 0.765 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.186 0.814 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.155 0.845 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 25.417 -20.331 0.058 32.548 hybrid contribution -0.883 -1.834 -0.271 2.054 sum 24.534 -22.165 -0.213 33.064 Atomic orbital electron populations 1.69939 1.05913 1.27745 1.48166 1.24717 0.94461 0.98992 0.93189 0.86731 0.81959 0.83231 0.79925 1.19224 1.19962 1.15839 1.22323 0.88292 0.97532 1.58687 0.89378 1.84830 1.09213 1.00040 1.97421 1.23278 0.93818 1.04436 1.05883 1.20320 0.90683 0.82205 0.75383 1.90727 1.58708 1.42081 1.47139 1.45843 1.06806 1.08316 1.78180 1.21627 0.82843 0.93963 1.04273 1.21599 0.91212 0.97125 1.05785 1.30024 1.06658 1.06643 1.23239 0.83092 1.21699 0.88306 0.91535 1.04285 1.59487 1.10510 1.36480 1.27289 1.21598 1.01957 0.92245 0.90555 1.30294 1.24846 1.06686 1.11602 1.08671 0.78607 0.76228 0.77858 1.93598 1.73157 1.76772 1.49537 1.93669 1.85727 1.26264 1.86453 0.91968 0.88420 0.88338 0.76535 0.90332 0.90361 0.88332 0.89273 0.88047 0.92327 0.81416 0.92466 0.88299 0.84456 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.87 13.97 55.49 0.78 -26.09 16 2 C 0.09 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 22.18 27.74 -169.99 -4.71 17.46 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.23 -6.09 6.74 56.52 0.38 -5.71 16 7 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 10 C -0.12 -2.45 6.16 36.01 0.22 -2.23 16 11 C 0.53 9.88 7.85 -10.98 -0.09 9.80 16 12 O -0.51 -11.78 15.86 5.56 0.09 -11.69 16 13 N -0.74 -9.81 5.56 -60.29 -0.33 -10.14 16 14 C 0.10 1.17 5.37 -4.04 -0.02 1.15 16 15 C -0.12 -0.85 4.79 -26.73 -0.13 -0.98 16 16 C -0.56 -3.34 2.66 -26.63 -0.07 -3.41 16 17 H 0.15 0.74 8.14 -51.93 -0.42 0.32 16 18 C 0.07 0.28 5.67 -3.96 -0.02 0.25 16 19 N -0.70 -2.24 6.60 -114.21 -0.75 -2.99 16 20 C 0.07 0.23 6.38 -3.96 -0.03 0.21 16 21 C -0.60 -2.93 6.58 37.25 0.24 -2.69 16 22 S 2.41 20.80 4.31 -107.50 -0.46 20.34 16 23 O -0.93 -10.69 17.93 -57.80 -1.04 -11.72 16 24 O -0.92 -12.13 16.13 -57.80 -0.93 -13.07 16 25 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 27 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 28 H 0.40 3.86 8.47 -40.82 -0.35 3.51 16 29 H 0.08 1.14 5.85 -51.93 -0.30 0.84 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.61 8.01 -51.93 -0.42 0.19 16 33 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.22 7.93 -51.93 -0.41 -0.19 16 35 H 0.36 0.39 8.89 -39.29 -0.35 0.04 16 36 H 0.06 0.20 7.93 -51.93 -0.41 -0.21 16 37 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -40.41 345.28 -9.46 -49.86 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.62 Total: -1.41 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 0.33 Total: -10.08 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: -0.31 Total: -39.23 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.88 Total: -36.48 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Atomic # 16 Polarization: 17.12 SS G_CDS: -2.46 Total: 14.67 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -40.41 -9.46 -49.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721727232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.457 kcal (2) G-P(sol) polarization free energy of solvation -40.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.69 seconds