Wall clock time and date at job start Fri Apr 10 2020 18:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48501 * 109.46939 * 270.00000 * 3 2 1 5 5 H 1.48496 * 109.47561 * 30.00146 * 3 2 1 6 6 H 1.48498 * 109.46932 * 150.00478 * 3 2 1 7 7 C 1.38796 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00433 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47364 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47469 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.59852 * 55.32441 * 16 15 14 18 18 C 1.53181 * 109.60491 * 175.81279 * 16 15 14 19 19 N 1.46471 * 109.89993 * 182.39582 * 18 16 15 20 20 C 1.46476 * 112.46250 * 288.03793 * 19 18 16 21 21 C 1.53177 * 109.89973 * 71.96369 * 20 19 18 22 22 S 1.81817 * 108.68096 * 297.36284 * 21 20 19 23 23 O 1.42101 * 108.70141 * 298.06381 * 22 21 20 24 24 O 1.42099 * 108.70552 * 166.57332 * 22 21 20 25 25 H 0.96996 * 119.99710 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 27 27 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 28 28 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.46923 * 300.00119 * 14 13 11 30 30 H 1.09004 * 109.47042 * 59.99705 * 14 13 11 31 31 H 1.08992 * 109.47346 * 300.00533 * 15 14 13 32 32 H 1.09004 * 109.46785 * 60.00155 * 15 14 13 33 33 H 1.08993 * 109.40227 * 302.52499 * 18 16 15 34 34 H 1.09002 * 109.39834 * 62.26472 * 18 16 15 35 35 H 1.00901 * 111.00400 * 53.07228 * 19 18 16 36 36 H 1.08997 * 109.39798 * 311.83093 * 20 19 18 37 37 H 1.09000 * 109.39621 * 192.09324 * 20 19 18 38 38 H 1.09001 * 109.60151 * 177.60396 * 21 20 19 39 39 H 1.08999 * 109.74005 * 57.19997 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7724 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2963 -0.0003 13 7 6.0457 -4.4948 -0.0001 14 6 7.4907 -4.7359 0.0006 15 6 7.7564 -6.2426 0.0007 16 6 9.2655 -6.4944 0.0008 17 1 9.7223 -5.9783 0.8452 18 6 9.5356 -7.9985 0.1063 19 7 10.9786 -8.2430 0.1643 20 6 11.6383 -8.0074 -1.1220 21 6 11.6887 -6.5047 -1.4146 22 16 9.9864 -5.8807 -1.5515 23 8 9.3478 -6.5339 -2.6400 24 8 10.0169 -4.4606 -1.5097 25 1 -0.4849 0.8400 0.0004 26 1 3.6440 -3.4314 0.8904 27 1 3.6433 -3.4317 -0.8896 28 1 5.4291 -5.2435 0.0000 29 1 7.9341 -4.2884 -0.8890 30 1 7.9332 -4.2892 0.8911 31 1 7.3131 -6.6897 0.8904 32 1 7.3139 -6.6896 -0.8895 33 1 9.0658 -8.3883 1.0092 34 1 9.1176 -8.5033 -0.7647 35 1 11.4086 -7.6979 0.8964 36 1 11.0819 -8.5116 -1.9120 37 1 12.6532 -8.4035 -1.0862 38 1 12.2179 -6.3321 -2.3518 39 1 12.2031 -5.9888 -0.6039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721727240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:24 Heat of formation + Delta-G solvation = -104.786774 kcal Electronic energy + Delta-G solvation = -22680.668315 eV Core-core repulsion = 19069.853371 eV Total energy + Delta-G solvation = -3610.814945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.085 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -39.40289 -38.71614 -37.40152 -36.59263 -35.84576 -33.47858 -32.42095 -30.92150 -29.58613 -27.50722 -25.59873 -24.20064 -22.92641 -22.42950 -20.50834 -19.46307 -17.90785 -17.67050 -17.47590 -16.57831 -16.39793 -16.18151 -15.54769 -15.43686 -15.35567 -14.94750 -14.85094 -14.40059 -13.93384 -13.80091 -13.48802 -13.25318 -13.04538 -12.79154 -12.68355 -12.55402 -12.47868 -12.30422 -12.25717 -11.87980 -11.64522 -11.32157 -11.24710 -10.98772 -10.60547 -10.56652 -9.84472 -9.57902 -9.42205 -9.03719 -8.96989 -8.48023 -6.90032 -6.27353 -3.98975 -0.58142 2.10173 2.72638 2.97891 3.02969 3.22961 3.32503 3.35500 3.42328 3.52905 3.59635 3.66544 4.02445 4.08974 4.18852 4.34908 4.36755 4.48395 4.59153 4.60954 4.77603 4.90063 4.97736 5.10686 5.11746 5.13690 5.23139 5.31624 5.54133 5.74488 5.78305 6.02132 6.04178 6.42756 6.45489 7.57409 7.95787 8.43085 8.48800 9.18936 10.81828 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.036853 B = 0.002378 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.596340 B =11773.691422 C =12126.198366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.528 3.472 12 O -0.513 6.513 13 N -0.736 5.736 14 C 0.096 3.904 15 C -0.114 4.114 16 C -0.601 4.601 17 H 0.143 0.857 18 C 0.073 3.927 19 N -0.689 5.689 20 C 0.067 3.933 21 C -0.652 4.652 22 S 2.406 3.594 23 O -0.926 6.926 24 O -0.922 6.922 25 H 0.271 0.729 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.401 0.599 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.353 0.647 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.142 0.858 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.654 -21.441 0.826 32.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.314 3.686 12 O -0.387 6.387 13 N -0.391 5.391 14 C -0.028 4.028 15 C -0.153 4.153 16 C -0.713 4.713 17 H 0.161 0.839 18 C -0.058 4.058 19 N -0.318 5.318 20 C -0.063 4.063 21 C -0.783 4.783 22 S 2.586 3.414 23 O -0.923 6.923 24 O -0.919 6.919 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.235 0.765 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.173 0.827 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.160 0.840 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 25.336 -19.947 0.041 32.246 hybrid contribution -0.606 0.021 0.613 0.862 sum 24.730 -19.926 0.653 31.765 Atomic orbital electron populations 1.69942 1.05903 1.27755 1.48126 1.24717 0.94464 0.98988 0.93185 0.86728 0.81883 0.83234 0.79973 1.19186 1.19959 1.15908 1.22317 0.88253 0.97543 1.58730 0.89362 1.84828 1.09271 1.00008 1.97424 1.23277 0.93758 1.04469 1.05911 1.20334 0.90714 0.82187 0.75339 1.90726 1.58729 1.42088 1.47155 1.45841 1.06754 1.08351 1.78196 1.21646 0.82961 0.94089 1.04116 1.21547 0.90759 0.96994 1.05973 1.30854 1.08089 1.09524 1.22842 0.83910 1.22034 0.88722 0.88666 1.06356 1.60009 1.02979 1.62131 1.06646 1.21910 1.02931 0.89322 0.92163 1.31096 1.25195 1.09435 1.12536 1.08727 0.78426 0.76276 0.77969 1.93611 1.72968 1.77167 1.48582 1.93676 1.85637 1.26222 1.86394 0.91954 0.88355 0.88350 0.76478 0.90438 0.90534 0.88217 0.89073 0.87713 0.88419 0.82672 0.88501 0.87979 0.83993 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.79 13.97 55.49 0.78 -26.01 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 22.10 27.74 -169.99 -4.72 17.39 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 7 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 10 C -0.12 -2.43 6.16 36.01 0.22 -2.21 16 11 C 0.53 9.78 7.85 -10.99 -0.09 9.70 16 12 O -0.51 -11.69 15.86 5.56 0.09 -11.60 16 13 N -0.74 -9.62 5.56 -60.29 -0.33 -9.96 16 14 C 0.10 1.12 5.34 -4.04 -0.02 1.10 16 15 C -0.11 -0.76 4.79 -26.74 -0.13 -0.88 16 16 C -0.60 -2.98 2.58 -26.64 -0.07 -3.05 16 17 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 18 C 0.07 0.25 5.70 -3.96 -0.02 0.23 16 19 N -0.69 -2.15 6.71 -114.22 -0.77 -2.91 16 20 C 0.07 0.21 6.41 -3.96 -0.03 0.19 16 21 C -0.65 -2.47 6.49 37.25 0.24 -2.23 16 22 S 2.41 18.85 4.29 -107.50 -0.46 18.39 16 23 O -0.93 -10.09 17.95 -57.80 -1.04 -11.12 16 24 O -0.92 -11.54 16.11 -57.80 -0.93 -12.47 16 25 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 27 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 28 H 0.40 3.78 8.47 -40.82 -0.35 3.43 16 29 H 0.08 1.10 5.82 -51.93 -0.30 0.79 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 33 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.10 0.36 7.93 -51.93 -0.41 -0.05 16 35 H 0.35 0.53 8.67 -39.29 -0.34 0.19 16 36 H 0.10 0.33 7.93 -51.93 -0.41 -0.08 16 37 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -40.41 345.00 -9.46 -49.87 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.61 Total: -1.81 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 0.33 Total: -9.30 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.33 Total: -38.88 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.88 Total: -35.20 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.72 Total: 17.39 kcal Atomic # 16 Polarization: 15.18 SS G_CDS: -2.45 Total: 12.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -40.41 -9.46 -49.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721727240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.913 kcal (2) G-P(sol) polarization free energy of solvation -40.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds