Wall clock time and date at job start Fri Apr 10 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48501 * 109.46939 * 270.00000 * 3 2 1 5 5 H 1.48496 * 109.47561 * 30.00146 * 3 2 1 6 6 H 1.48498 * 109.46932 * 150.00478 * 3 2 1 7 7 C 1.38796 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00433 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47364 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47469 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.59852 * 55.32441 * 16 15 14 18 18 C 1.53181 * 109.60491 * 175.81279 * 16 15 14 19 19 N 1.46471 * 109.89993 * 182.39582 * 18 16 15 20 20 C 1.46476 * 112.46250 * 288.03793 * 19 18 16 21 21 C 1.53177 * 109.89973 * 71.96369 * 20 19 18 22 22 S 1.81817 * 108.68096 * 297.36284 * 21 20 19 23 23 O 1.42101 * 108.70141 * 298.06381 * 22 21 20 24 24 O 1.42099 * 108.70552 * 166.57332 * 22 21 20 25 25 H 0.96996 * 119.99710 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 27 27 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 28 28 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.46923 * 300.00119 * 14 13 11 30 30 H 1.09004 * 109.47042 * 59.99705 * 14 13 11 31 31 H 1.08992 * 109.47346 * 300.00533 * 15 14 13 32 32 H 1.09004 * 109.46785 * 60.00155 * 15 14 13 33 33 H 1.08993 * 109.40227 * 302.52499 * 18 16 15 34 34 H 1.09002 * 109.39834 * 62.26472 * 18 16 15 35 35 H 1.00901 * 111.00400 * 53.07228 * 19 18 16 36 36 H 1.08997 * 109.39798 * 311.83093 * 20 19 18 37 37 H 1.09000 * 109.39621 * 192.09324 * 20 19 18 38 38 H 1.09001 * 109.60151 * 177.60396 * 21 20 19 39 39 H 1.08999 * 109.74005 * 57.19997 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7724 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2963 -0.0003 13 7 6.0457 -4.4948 -0.0001 14 6 7.4907 -4.7359 0.0006 15 6 7.7564 -6.2426 0.0007 16 6 9.2655 -6.4944 0.0008 17 1 9.7223 -5.9783 0.8452 18 6 9.5356 -7.9985 0.1063 19 7 10.9786 -8.2430 0.1643 20 6 11.6383 -8.0074 -1.1220 21 6 11.6887 -6.5047 -1.4146 22 16 9.9864 -5.8807 -1.5515 23 8 9.3478 -6.5339 -2.6400 24 8 10.0169 -4.4606 -1.5097 25 1 -0.4849 0.8400 0.0004 26 1 3.6440 -3.4314 0.8904 27 1 3.6433 -3.4317 -0.8896 28 1 5.4291 -5.2435 0.0000 29 1 7.9341 -4.2884 -0.8890 30 1 7.9332 -4.2892 0.8911 31 1 7.3131 -6.6897 0.8904 32 1 7.3139 -6.6896 -0.8895 33 1 9.0658 -8.3883 1.0092 34 1 9.1176 -8.5033 -0.7647 35 1 11.4086 -7.6979 0.8964 36 1 11.0819 -8.5116 -1.9120 37 1 12.6532 -8.4035 -1.0862 38 1 12.2179 -6.3321 -2.3518 39 1 12.2031 -5.9888 -0.6039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721727240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:21 Heat of formation + Delta-G solvation = -141.047330 kcal Electronic energy + Delta-G solvation = -22682.240691 eV Core-core repulsion = 19069.853371 eV Total energy + Delta-G solvation = -3612.387321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.085 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.75571 -39.12772 -38.09801 -37.30837 -36.70601 -34.68591 -34.37002 -31.70936 -30.61048 -28.30416 -27.81395 -24.75166 -23.30546 -23.02872 -21.88364 -20.07243 -19.87270 -18.22897 -18.06039 -17.82876 -17.52078 -17.09828 -16.85221 -16.70939 -16.10160 -15.87599 -15.65086 -15.38735 -15.14194 -14.94175 -14.75165 -14.34177 -13.92378 -13.76623 -13.56229 -13.36324 -13.21782 -13.18557 -13.12799 -13.03147 -12.69431 -12.64771 -12.47296 -12.37182 -11.87803 -11.81948 -11.18419 -11.13729 -10.96089 -10.55120 -10.24373 -9.72169 -9.01947 -8.52726 -6.23804 -1.10490 0.96169 1.30416 1.45172 1.49774 1.53410 1.61526 2.11595 2.24325 2.56725 2.69539 2.85421 2.88143 3.07209 3.23334 3.53953 3.65054 3.83429 3.86162 3.89501 4.01122 4.15862 4.22327 4.27738 4.44240 4.46572 4.53475 4.69136 4.81853 4.92288 4.94037 5.00846 5.28596 5.69969 5.80287 6.10482 6.32252 6.39974 6.92583 7.13686 8.59554 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.036853 B = 0.002378 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.596340 B =11773.691422 C =12126.198366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.238 1.238 7 C -0.527 4.527 8 H 0.065 0.935 9 S -0.181 6.181 10 C -0.110 4.110 11 C 0.530 3.470 12 O -0.563 6.563 13 N -0.710 5.710 14 C 0.088 3.912 15 C -0.110 4.110 16 C -0.578 4.578 17 H 0.168 0.832 18 C 0.075 3.925 19 N -0.689 5.689 20 C 0.064 3.936 21 C -0.626 4.626 22 S 2.376 3.624 23 O -0.972 6.972 24 O -0.985 6.985 25 H 0.277 0.723 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.422 0.578 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.365 0.635 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.151 0.849 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.578 -23.678 2.274 35.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.162 1.162 7 C -0.674 4.674 8 H 0.083 0.917 9 S 0.045 5.955 10 C -0.260 4.260 11 C 0.315 3.685 12 O -0.441 6.441 13 N -0.365 5.365 14 C -0.036 4.036 15 C -0.149 4.149 16 C -0.692 4.692 17 H 0.186 0.814 18 C -0.056 4.056 19 N -0.318 5.318 20 C -0.067 4.067 21 C -0.760 4.760 22 S 2.565 3.435 23 O -0.969 6.969 24 O -0.982 6.982 25 H 0.087 0.913 26 H 0.139 0.861 27 H 0.133 0.867 28 H 0.260 0.740 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.153 0.847 32 H 0.113 0.887 33 H 0.145 0.855 34 H 0.113 0.887 35 H 0.187 0.813 36 H 0.110 0.890 37 H 0.141 0.859 38 H 0.169 0.831 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 27.229 -22.222 1.463 35.176 hybrid contribution -1.116 0.487 0.190 1.232 sum 26.113 -21.735 1.652 34.015 Atomic orbital electron populations 1.70012 1.07197 1.29021 1.49122 1.25549 0.95294 1.02206 0.92938 0.85878 0.80677 0.79735 0.80146 1.18899 1.18122 1.16198 1.22439 0.89997 0.96783 1.58226 0.91703 1.84804 1.06729 1.06343 1.97605 1.23267 0.95300 0.99624 1.07850 1.20120 0.89728 0.83370 0.75277 1.90713 1.59476 1.43966 1.49963 1.45596 1.08171 1.07110 1.75610 1.21844 0.81246 0.97684 1.02829 1.21591 0.92273 0.93159 1.07860 1.30704 1.06712 1.11048 1.20786 0.81396 1.22135 0.89302 0.86861 1.07290 1.60027 1.02713 1.62227 1.06855 1.22052 1.04072 0.88315 0.92252 1.30911 1.20866 1.10073 1.14173 1.09089 0.80429 0.75155 0.78843 1.93548 1.74904 1.77182 1.51271 1.93605 1.87050 1.30055 1.87513 0.91335 0.86100 0.86674 0.74031 0.93298 0.90538 0.84738 0.88750 0.85549 0.88740 0.81309 0.88993 0.85903 0.83128 0.82251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.20 13.97 21.65 0.30 -55.90 16 2 C 0.05 2.71 5.50 84.86 0.47 3.18 16 3 Si 0.91 45.89 27.74 68.60 1.90 47.79 16 4 H -0.26 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.24 -11.99 6.74 99.48 0.67 -11.32 16 7 C -0.53 -31.05 10.04 67.95 0.68 -30.36 16 8 H 0.06 3.99 8.03 -2.91 -0.02 3.97 16 9 S -0.18 -9.42 18.55 -56.49 -1.05 -10.47 16 10 C -0.11 -4.21 6.16 71.24 0.44 -3.77 16 11 C 0.53 19.25 7.85 87.66 0.69 19.94 16 12 O -0.56 -25.97 15.86 -3.04 -0.05 -26.02 16 13 N -0.71 -17.41 5.56 -463.05 -2.57 -19.98 16 14 C 0.09 1.96 5.34 86.38 0.46 2.42 16 15 C -0.11 -1.18 4.79 30.59 0.15 -1.03 16 16 C -0.58 -4.24 2.58 30.65 0.08 -4.16 16 17 H 0.17 0.43 8.14 -2.39 -0.02 0.41 16 18 C 0.08 0.25 5.70 86.45 0.49 0.74 16 19 N -0.69 -1.69 6.71 -515.28 -3.46 -5.15 16 20 C 0.06 0.21 6.41 86.44 0.55 0.77 16 21 C -0.63 -3.41 6.49 72.04 0.47 -2.94 16 22 S 2.38 36.83 4.29 -56.49 -0.24 36.59 16 23 O -0.97 -21.95 17.95 -127.41 -2.29 -24.24 16 24 O -0.99 -26.12 16.11 -127.41 -2.05 -28.18 16 25 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 26 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 27 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 28 H 0.42 6.77 8.47 -92.71 -0.79 5.99 16 29 H 0.05 1.43 5.82 -2.39 -0.01 1.42 16 30 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 1.01 8.03 -2.38 -0.02 0.99 16 33 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.09 0.44 7.93 -2.39 -0.02 0.42 16 35 H 0.37 -0.49 8.67 -89.69 -0.78 -1.27 16 36 H 0.09 0.44 7.93 -2.39 -0.02 0.42 16 37 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.16 0.12 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -91.83 345.00 -5.55 -97.38 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -0.52 Total: 3.40 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 4.48 Total: -15.21 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -5.73 Total: -81.03 kcal Atomic # 8 Polarization: -74.05 SS G_CDS: -4.39 Total: -78.44 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Atomic # 16 Polarization: 27.41 SS G_CDS: -1.29 Total: 26.12 kcal Total: -91.83 -5.55 -97.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721727240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.671 kcal (2) G-P(sol) polarization free energy of solvation -91.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds