Wall clock time and date at job start Fri Apr 10 2020 18:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86806 * 119.99813 * 2 1 4 4 H 1.48498 * 109.46841 * 240.00188 * 3 2 1 5 5 H 1.48495 * 109.46985 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47060 * 120.00206 * 3 2 1 7 7 C 1.38633 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99537 * 179.97438 * 7 2 1 9 9 O 1.34807 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.35659 * 117.00149 * 174.94529 * 9 7 2 11 11 C 1.39071 * 119.91306 * 185.27399 * 10 9 7 12 12 C 1.37722 * 120.08447 * 179.76350 * 11 10 9 13 13 C 1.39811 * 119.91441 * 0.50895 * 12 11 10 14 14 C 1.47353 * 120.09093 * 179.71942 * 13 12 11 15 15 N 1.29838 * 119.99727 * 0.02562 * 14 13 12 16 16 N 1.40098 * 119.99640 * 179.97438 * 15 14 13 17 17 C 1.34782 * 119.99951 * 180.02562 * 16 15 14 18 18 S 1.71194 * 120.00331 * 180.02562 * 17 16 15 19 19 N 1.34782 * 119.99619 * 359.97438 * 17 16 15 20 20 C 1.46499 * 119.99841 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47418 * 180.02562 * 20 19 17 22 22 N 1.34765 * 120.00318 * 180.02562 * 21 20 19 23 23 O 1.21280 * 119.99626 * 359.97438 * 21 20 19 24 24 C 1.39812 * 119.82185 * 359.74710 * 13 12 11 25 25 C 1.37716 * 119.91300 * 359.97438 * 24 13 12 26 26 H 0.97006 * 120.00279 * 0.02562 * 1 2 3 27 27 H 1.07995 * 119.95533 * 359.97438 * 11 10 9 28 28 H 1.08003 * 120.04008 * 180.22997 * 12 11 10 29 29 H 1.07999 * 120.00529 * 180.02562 * 14 13 12 30 30 H 0.97000 * 120.00679 * 359.97438 * 16 15 14 31 31 H 0.97003 * 120.00320 * 0.02562 * 19 17 16 32 32 H 1.09006 * 109.47154 * 300.00177 * 20 19 17 33 33 H 1.09000 * 109.46978 * 60.00192 * 20 19 17 34 34 H 0.97006 * 120.00188 * 359.97438 * 22 21 20 35 35 H 0.97002 * 120.00136 * 179.97438 * 22 21 20 36 36 H 1.08004 * 120.04559 * 179.97438 * 24 13 12 37 37 H 1.08003 * 119.95965 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6965 1.2124 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2004 -0.0010 9 8 1.3349 -2.3680 -0.0005 10 6 2.0696 -3.5034 -0.1076 11 6 1.4318 -4.7337 -0.2244 12 6 2.1743 -5.8881 -0.3382 13 6 3.5708 -5.8231 -0.3254 14 6 4.3689 -7.0563 -0.4406 15 7 3.7753 -8.2054 -0.5548 16 7 4.5342 -9.3779 -0.6649 17 6 3.9180 -10.5707 -0.7838 18 16 4.8452 -12.0036 -0.9177 19 7 2.5718 -10.6355 -0.7963 20 6 1.9021 -11.9321 -0.9251 21 6 0.4088 -11.7296 -0.9130 22 7 -0.4160 -12.7901 -1.0192 23 8 -0.0507 -10.6122 -0.8068 24 6 4.2081 -4.5847 -0.2024 25 6 3.4586 -3.4343 -0.0949 26 1 -0.4851 0.8401 -0.0004 27 1 0.3531 -4.7836 -0.2293 28 1 1.6783 -6.8429 -0.4326 29 1 5.4476 -7.0045 -0.4302 30 1 5.5030 -9.3313 -0.6562 31 1 2.0464 -9.8237 -0.7201 32 1 2.1971 -12.4019 -1.8634 33 1 2.1888 -12.5735 -0.0917 34 1 -0.0485 -13.6838 -1.1038 35 1 -1.3772 -12.6597 -1.0110 36 1 5.2867 -4.5303 -0.1917 37 1 3.9501 -2.4774 0.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731928159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:39 Heat of formation + Delta-G solvation = 18.106088 kcal Electronic energy + Delta-G solvation = -22752.797539 eV Core-core repulsion = 19044.160428 eV Total energy + Delta-G solvation = -3708.637111 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29660 -39.34898 -38.80693 -37.11303 -35.87077 -34.23695 -33.07943 -32.41437 -30.49999 -29.21695 -27.88897 -25.81348 -24.19947 -22.51951 -21.99475 -21.58699 -20.49257 -19.13643 -18.52055 -17.97809 -17.65471 -17.06052 -16.74310 -16.22567 -15.80964 -15.35690 -14.92404 -14.76654 -14.73894 -14.42964 -13.93791 -13.77353 -13.71384 -13.43834 -12.99145 -12.64256 -12.11686 -11.92379 -11.53513 -11.38020 -11.30002 -10.95845 -10.89868 -10.63160 -10.62785 -10.36981 -10.23388 -9.60264 -9.39894 -8.96642 -8.46274 -8.09042 -7.85299 -7.29454 -6.72111 -4.27729 0.76995 1.54632 1.56694 2.05886 2.06537 2.33616 2.64545 2.72598 2.99195 3.02550 3.03804 3.16021 3.75956 4.26852 4.38803 4.63014 4.84437 4.84846 4.87390 4.98525 5.04530 5.40458 5.49448 5.63771 5.93467 5.98371 6.16215 6.22902 6.36324 6.42902 6.64271 6.71493 6.80631 6.96967 6.99608 7.05946 7.17641 7.52669 7.67771 7.72302 7.82400 8.71824 9.37245 10.43909 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.002241 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.416653 B =12492.136289 C =13889.905478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.098 0.902 9 O -0.158 6.158 10 C 0.172 3.828 11 C -0.201 4.201 12 C -0.020 4.020 13 C -0.189 4.189 14 C 0.195 3.805 15 N -0.330 5.330 16 N -0.534 5.534 17 C 0.603 3.397 18 S -0.657 6.657 19 N -0.657 5.657 20 C 0.102 3.898 21 C 0.511 3.489 22 N -0.846 5.846 23 O -0.532 6.532 24 C -0.025 4.025 25 C -0.242 4.242 26 H 0.276 0.724 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.411 0.589 31 H 0.425 0.575 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.406 0.594 35 H 0.408 0.592 36 H 0.116 0.884 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 -17.982 -1.485 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.116 0.884 9 O -0.058 6.058 10 C 0.114 3.886 11 C -0.221 4.221 12 C -0.040 4.040 13 C -0.194 4.194 14 C -0.010 4.010 15 N -0.138 5.138 16 N -0.255 5.255 17 C 0.240 3.760 18 S -0.533 6.533 19 N -0.290 5.290 20 C -0.026 4.026 21 C 0.294 3.706 22 N -0.411 5.411 23 O -0.408 6.408 24 C -0.046 4.046 25 C -0.262 4.262 26 H 0.086 0.914 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.255 0.745 31 H 0.268 0.732 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.235 0.765 35 H 0.240 0.760 36 H 0.134 0.866 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.606 -18.438 -1.529 18.684 hybrid contribution 0.861 1.755 0.099 1.957 sum 3.467 -16.684 -1.429 17.100 Atomic orbital electron populations 1.70030 1.06161 1.28544 1.43354 1.25418 0.95929 0.99248 0.95884 0.85696 0.78780 0.79108 0.79462 1.19191 1.20038 1.19194 1.21439 0.92127 0.80519 1.52810 0.88445 1.83941 1.35051 1.11856 1.74947 1.19611 0.90357 0.87862 0.90731 1.20195 1.00033 0.90021 1.11827 1.20843 0.92333 0.97263 0.93573 1.17746 0.92717 0.89599 1.19327 1.24491 0.97607 0.90254 0.88670 1.74865 1.22940 0.93150 1.22894 1.46139 1.08578 1.02161 1.68598 1.21771 0.85652 0.88554 0.79993 1.93565 1.64661 1.19220 1.75827 1.44445 1.03752 1.11594 1.69161 1.21413 0.88544 0.85658 1.07033 1.20519 0.89269 0.85104 0.75714 1.43653 1.10596 1.09764 1.77111 1.90837 1.77597 1.23689 1.48644 1.20806 0.98530 0.90925 0.94343 1.21055 0.93595 0.99020 1.12517 0.91411 0.85938 0.85924 0.86721 0.74483 0.73247 0.86293 0.86284 0.76473 0.76015 0.86650 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.25 13.67 55.48 0.76 -22.49 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.95 18.85 29.55 -169.99 -5.02 13.83 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.39 -10.05 9.48 30.88 0.29 -9.76 16 8 H 0.10 2.25 5.19 -52.48 -0.27 1.97 16 9 O -0.16 -4.16 9.75 0.40 0.00 -4.15 16 10 C 0.17 3.77 6.65 -38.96 -0.26 3.51 16 11 C -0.20 -3.93 9.97 -39.46 -0.39 -4.32 16 12 C -0.02 -0.33 9.57 -39.18 -0.37 -0.71 16 13 C -0.19 -2.86 5.87 -105.01 -0.62 -3.48 16 14 C 0.20 2.39 10.75 -14.69 -0.16 2.23 16 15 N -0.33 -4.26 9.46 32.14 0.30 -3.95 16 16 N -0.53 -6.33 6.26 29.96 0.19 -6.14 16 17 C 0.60 7.64 7.97 -86.91 -0.69 6.94 16 18 S -0.66 -9.67 29.32 -107.50 -3.15 -12.83 16 19 N -0.66 -7.48 5.49 -63.21 -0.35 -7.82 16 20 C 0.10 0.83 5.61 -5.19 -0.03 0.80 16 21 C 0.51 4.33 8.17 -10.99 -0.09 4.24 16 22 N -0.85 -3.53 8.87 31.22 0.28 -3.25 16 23 O -0.53 -7.06 16.50 5.56 0.09 -6.97 16 24 C -0.03 -0.39 9.78 -39.18 -0.38 -0.77 16 25 C -0.24 -4.58 9.15 -39.46 -0.36 -4.94 16 26 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 28 H 0.12 1.92 7.55 -52.48 -0.40 1.53 16 29 H 0.12 1.02 8.02 -52.49 -0.42 0.60 16 30 H 0.41 4.18 8.63 -182.60 -1.58 2.61 16 31 H 0.42 5.44 6.48 -40.82 -0.26 5.17 16 32 H 0.12 0.85 7.99 -51.93 -0.42 0.43 16 33 H 0.12 0.85 7.99 -51.93 -0.41 0.43 16 34 H 0.41 0.41 8.83 -40.82 -0.36 0.05 16 35 H 0.41 1.48 8.93 -40.82 -0.36 1.11 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.13 2.48 5.62 -52.48 -0.29 2.18 16 LS Contribution 348.33 15.07 5.25 5.25 Total: -1.00 -33.20 348.33 -9.57 -42.77 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.76 Total: 11.03 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -3.16 Total: -5.28 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 1.18 Total: -43.65 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.10 Total: -11.12 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -3.15 Total: -12.83 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.20 -9.57 -42.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731928159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.880 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds