Wall clock time and date at job start Fri Apr 10 2020 18:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47427 * 270.00328 * 3 2 1 5 5 H 1.48499 * 109.47196 * 30.00276 * 3 2 1 6 6 H 1.48508 * 109.47170 * 150.00233 * 3 2 1 7 7 C 1.37882 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00108 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99862 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47125 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.47144 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54352 * 68.37743 * 11 10 9 13 13 O 1.42101 * 110.54330 * 291.62243 * 11 10 9 14 14 N 1.65595 * 104.44692 * 179.97438 * 11 10 9 15 15 C 1.34784 * 120.00168 * 65.00535 * 14 11 10 16 16 O 1.21280 * 119.99668 * 359.97438 * 15 14 11 17 17 C 1.50703 * 120.00276 * 180.02562 * 15 14 11 18 18 N 1.46491 * 109.46899 * 179.97438 * 17 15 14 19 19 C 1.44545 * 120.61733 * 269.99881 * 18 17 15 20 20 C 1.53419 * 111.71899 * 180.02562 * 19 18 17 21 21 S 1.82066 * 103.93828 * 359.78517 * 20 19 18 22 22 C 1.33005 * 120.61505 * 90.02440 * 18 17 15 23 23 O 1.21623 * 125.19972 * 359.93640 * 22 18 17 24 24 H 0.96996 * 120.00470 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47686 * 59.99828 * 9 7 2 26 26 H 1.09009 * 109.47209 * 299.99956 * 9 7 2 27 27 H 1.08998 * 109.47086 * 59.99861 * 10 9 7 28 28 H 1.08992 * 109.46923 * 299.99950 * 10 9 7 29 29 H 0.97004 * 120.00411 * 245.00113 * 14 11 10 30 30 H 1.08992 * 109.46878 * 59.99172 * 17 15 14 31 31 H 1.09007 * 109.46441 * 299.99463 * 17 15 14 32 32 H 1.09002 * 109.03281 * 300.61906 * 19 18 17 33 33 H 1.08999 * 109.04019 * 59.42901 * 19 18 17 34 34 H 1.09006 * 110.53710 * 118.61245 * 20 19 18 35 35 H 1.08995 * 110.53947 * 241.24259 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 16 5.8356 -2.6365 -0.0038 12 8 6.3352 -2.1468 1.2331 13 8 6.3332 -2.1455 -1.2409 14 7 6.2488 -4.2400 -0.0042 15 6 5.9385 -5.0157 -1.0619 16 8 5.3562 -4.5392 -2.0132 17 6 6.3140 -6.4752 -1.0621 18 7 5.8692 -7.0936 -2.3134 19 6 4.5544 -7.6852 -2.4155 20 6 4.3026 -8.2721 -3.8105 21 16 5.8429 -7.9247 -4.7169 22 6 6.6680 -7.1215 -3.3765 23 8 7.7925 -6.6601 -3.4209 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8745 -0.6799 -0.8912 27 1 3.6579 -3.1498 -0.8924 28 1 3.6586 -3.1509 0.8874 29 1 6.7142 -4.6212 0.7567 30 1 5.8342 -6.9738 -0.2201 31 1 7.3961 -6.5718 -0.9732 32 1 4.4632 -8.4790 -1.6740 33 1 3.8040 -6.9218 -2.2101 34 1 4.1261 -9.3459 -3.7475 35 1 3.4587 -7.7744 -4.2881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776122361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:32 Heat of formation + Delta-G solvation = -129.455158 kcal Electronic energy + Delta-G solvation = -23089.948178 eV Core-core repulsion = 19342.230437 eV Total energy + Delta-G solvation = -3747.717741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 322.054 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03450 -39.46158 -37.07082 -36.87646 -35.82362 -34.69638 -34.02118 -32.11845 -31.55788 -28.75505 -26.08228 -25.28255 -22.90505 -21.38747 -21.01553 -19.55170 -18.63634 -18.44579 -17.94055 -17.26709 -16.80999 -16.51909 -16.07789 -15.39778 -15.31111 -14.93679 -14.73243 -14.52875 -14.38361 -14.28928 -13.76651 -13.47620 -12.89562 -12.75792 -12.69655 -12.57067 -11.99166 -11.93203 -11.81489 -11.35548 -11.33443 -11.29864 -11.05589 -10.79673 -10.48241 -10.26353 -10.18130 -9.71936 -9.57543 -9.41239 -8.70122 -8.59923 -6.20729 -4.22482 0.26170 0.74507 1.42930 1.77198 1.87033 2.38516 2.66015 3.24779 3.31827 3.35327 3.71847 3.74297 3.93348 4.22418 4.32498 4.35463 4.43933 4.65129 4.71494 4.82340 4.92501 5.07974 5.10720 5.35914 5.39963 5.45381 6.17186 6.32116 6.38817 6.73388 6.86709 7.13688 7.24120 7.48746 8.31196 8.79207 9.38520 10.91499 Molecular weight = 322.05amu Principal moments of inertia in cm(-1) A = 0.017782 B = 0.003536 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.285858 B = 7917.589646 C = 8805.803715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.869 3.131 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.567 4.567 11 S 2.561 3.439 12 O -0.951 6.951 13 O -0.934 6.934 14 N -1.055 6.055 15 C 0.514 3.486 16 O -0.475 6.475 17 C 0.099 3.901 18 N -0.598 5.598 19 C 0.097 3.903 20 C -0.100 4.100 21 S -0.165 6.165 22 C 0.549 3.451 23 O -0.479 6.479 24 H 0.267 0.733 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.135 0.865 28 H 0.128 0.872 29 H 0.431 0.569 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.603 -21.329 -0.533 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.045 4.045 10 C -0.702 4.702 11 S 2.661 3.339 12 O -0.942 6.942 13 O -0.924 6.924 14 N -0.817 5.817 15 C 0.298 3.702 16 O -0.345 6.345 17 C -0.033 4.033 18 N -0.335 5.335 19 C -0.027 4.027 20 C -0.249 4.249 21 S 0.061 5.939 22 C 0.227 3.773 23 O -0.355 6.355 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.153 0.847 28 H 0.146 0.854 29 H 0.266 0.734 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.138 0.862 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.631 -20.192 -2.486 22.955 hybrid contribution -0.396 0.644 1.638 1.804 sum 10.235 -19.548 -0.848 22.082 Atomic orbital electron populations 1.69866 1.06195 1.27344 1.49785 1.24962 0.94826 0.99153 0.94024 0.86930 0.80650 0.83660 0.79250 1.19571 1.20674 1.18643 1.20783 0.87520 0.94972 1.52586 0.90372 1.19440 1.00085 0.86943 0.98062 1.30171 1.18505 1.10024 1.11452 1.06839 0.80197 0.72263 0.74609 1.93604 1.79464 1.76119 1.45005 1.93626 1.78393 1.75988 1.44425 1.55378 1.66759 1.32775 1.26796 1.21087 0.77715 0.90076 0.81336 1.90944 1.37215 1.74334 1.31996 1.21544 1.04359 0.89674 0.87680 1.47509 1.16016 1.57812 1.12169 1.21470 0.84132 0.99767 0.97342 1.24208 0.98734 1.06394 0.95529 1.87526 1.15411 1.71352 1.19598 1.21761 0.87928 0.81837 0.85747 1.90901 1.17333 1.48280 1.78981 0.92300 0.94801 0.95118 0.84652 0.85381 0.73417 0.85315 0.85333 0.88694 0.88387 0.86195 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 10 C -0.57 -10.27 5.82 37.16 0.22 -10.05 16 11 S 2.56 42.83 5.11 -107.50 -0.55 42.28 16 12 O -0.95 -17.22 18.08 -57.54 -1.04 -18.26 16 13 O -0.93 -19.60 17.04 -64.78 -1.10 -20.70 16 14 N -1.05 -11.49 5.60 31.22 0.17 -11.32 16 15 C 0.51 6.07 7.64 -10.98 -0.08 5.98 16 16 O -0.48 -7.81 14.53 -11.55 -0.17 -7.98 16 17 C 0.10 0.71 6.04 -5.20 -0.03 0.68 16 18 N -0.60 -5.35 2.27 -180.66 -0.41 -5.76 16 19 C 0.10 0.53 6.80 -4.87 -0.03 0.49 16 20 C -0.10 -0.51 7.42 37.37 0.28 -0.24 16 21 S -0.17 -1.66 23.25 -107.50 -2.50 -4.16 16 22 C 0.55 6.82 8.27 53.27 0.44 7.26 16 23 O -0.48 -7.69 17.28 5.26 0.09 -7.60 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 26 H 0.03 0.73 7.57 -51.92 -0.39 0.34 16 27 H 0.14 2.42 7.19 -51.92 -0.37 2.05 16 28 H 0.13 1.95 8.14 -51.93 -0.42 1.52 16 29 H 0.43 2.64 8.79 -34.47 -0.30 2.33 16 30 H 0.13 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.13 0.81 7.66 -51.93 -0.40 0.41 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -40.99 329.99 -8.14 -49.13 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -3.96 Total: -2.56 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 0.24 Total: -8.80 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.54 Total: -43.02 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -2.22 Total: -54.54 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 41.17 SS G_CDS: -3.05 Total: 38.12 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -40.99 -8.14 -49.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.325 kcal (2) G-P(sol) polarization free energy of solvation -40.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds