Wall clock time and date at job start Fri Apr 10 2020 18:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47427 * 270.00328 * 3 2 1 5 5 H 1.48499 * 109.47196 * 30.00276 * 3 2 1 6 6 H 1.48508 * 109.47170 * 150.00233 * 3 2 1 7 7 C 1.37882 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00108 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99862 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47125 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.47144 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54352 * 68.37743 * 11 10 9 13 13 O 1.42101 * 110.54330 * 291.62243 * 11 10 9 14 14 N 1.65595 * 104.44692 * 179.97438 * 11 10 9 15 15 C 1.34784 * 120.00168 * 65.00535 * 14 11 10 16 16 O 1.21280 * 119.99668 * 359.97438 * 15 14 11 17 17 C 1.50703 * 120.00276 * 180.02562 * 15 14 11 18 18 N 1.46491 * 109.46899 * 179.97438 * 17 15 14 19 19 C 1.44545 * 120.61733 * 269.99881 * 18 17 15 20 20 C 1.53419 * 111.71899 * 180.02562 * 19 18 17 21 21 S 1.82066 * 103.93828 * 359.78517 * 20 19 18 22 22 C 1.33005 * 120.61505 * 90.02440 * 18 17 15 23 23 O 1.21623 * 125.19972 * 359.93640 * 22 18 17 24 24 H 0.96996 * 120.00470 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47686 * 59.99828 * 9 7 2 26 26 H 1.09009 * 109.47209 * 299.99956 * 9 7 2 27 27 H 1.08998 * 109.47086 * 59.99861 * 10 9 7 28 28 H 1.08992 * 109.46923 * 299.99950 * 10 9 7 29 29 H 0.97004 * 120.00411 * 245.00113 * 14 11 10 30 30 H 1.08992 * 109.46878 * 59.99172 * 17 15 14 31 31 H 1.09007 * 109.46441 * 299.99463 * 17 15 14 32 32 H 1.09002 * 109.03281 * 300.61906 * 19 18 17 33 33 H 1.08999 * 109.04019 * 59.42901 * 19 18 17 34 34 H 1.09006 * 110.53710 * 118.61245 * 20 19 18 35 35 H 1.08995 * 110.53947 * 241.24259 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 16 5.8356 -2.6365 -0.0038 12 8 6.3352 -2.1468 1.2331 13 8 6.3332 -2.1455 -1.2409 14 7 6.2488 -4.2400 -0.0042 15 6 5.9385 -5.0157 -1.0619 16 8 5.3562 -4.5392 -2.0132 17 6 6.3140 -6.4752 -1.0621 18 7 5.8692 -7.0936 -2.3134 19 6 4.5544 -7.6852 -2.4155 20 6 4.3026 -8.2721 -3.8105 21 16 5.8429 -7.9247 -4.7169 22 6 6.6680 -7.1215 -3.3765 23 8 7.7925 -6.6601 -3.4209 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8745 -0.6799 -0.8912 27 1 3.6579 -3.1498 -0.8924 28 1 3.6586 -3.1509 0.8874 29 1 6.7142 -4.6212 0.7567 30 1 5.8342 -6.9738 -0.2201 31 1 7.3961 -6.5718 -0.9732 32 1 4.4632 -8.4790 -1.6740 33 1 3.8040 -6.9218 -2.2101 34 1 4.1261 -9.3459 -3.7475 35 1 3.4587 -7.7744 -4.2881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776122361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:30 Heat of formation + Delta-G solvation = -164.090314 kcal Electronic energy + Delta-G solvation = -23091.450071 eV Core-core repulsion = 19342.230437 eV Total energy + Delta-G solvation = -3749.219634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 322.054 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.88666 -40.40176 -38.36075 -37.80632 -37.29421 -35.99099 -35.71002 -33.53442 -32.65063 -29.44413 -27.96708 -25.89839 -23.81153 -23.17506 -21.81289 -20.79166 -19.60386 -19.34373 -19.27271 -18.69857 -17.86939 -17.38779 -17.26372 -16.66802 -16.54457 -16.32489 -15.77788 -15.43518 -15.35768 -15.27608 -15.19394 -14.85810 -14.00370 -13.88991 -13.78638 -13.44214 -13.31832 -13.26756 -13.17028 -13.12465 -13.04624 -12.35677 -12.17751 -11.99084 -11.98165 -11.75809 -11.69139 -11.23108 -11.13566 -10.86488 -10.35190 -9.30482 -8.38544 -6.44265 -1.08591 -0.00196 0.83076 0.89268 0.99545 1.30613 1.32803 1.35976 1.41755 1.95439 2.27627 2.48912 2.92753 2.95596 3.16373 3.27759 3.73431 3.91429 3.94982 3.97529 3.99443 4.23785 4.46354 4.50049 4.60558 4.72690 4.84314 4.98920 5.03285 5.43386 5.60296 5.65444 6.13691 6.28667 6.40846 6.61010 7.20003 8.76755 Molecular weight = 322.05amu Principal moments of inertia in cm(-1) A = 0.017782 B = 0.003536 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.285858 B = 7917.589646 C = 8805.803715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.017 3.983 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.526 4.526 8 H 0.053 0.947 9 C -0.017 4.017 10 C -0.572 4.572 11 S 2.595 3.405 12 O -0.964 6.964 13 O -0.980 6.980 14 N -1.031 6.031 15 C 0.510 3.490 16 O -0.526 6.526 17 C 0.100 3.900 18 N -0.593 5.593 19 C 0.086 3.914 20 C -0.083 4.083 21 S -0.212 6.212 22 C 0.536 3.464 23 O -0.532 6.532 24 H 0.270 0.730 25 H 0.041 0.959 26 H 0.024 0.976 27 H 0.134 0.866 28 H 0.157 0.843 29 H 0.455 0.545 30 H 0.194 0.806 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.055 -23.194 1.135 25.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.182 4.182 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.565 4.565 8 H 0.071 0.929 9 C -0.056 4.056 10 C -0.705 4.705 11 S 2.693 3.307 12 O -0.954 6.954 13 O -0.970 6.970 14 N -0.800 5.800 15 C 0.296 3.704 16 O -0.399 6.399 17 C -0.031 4.031 18 N -0.328 5.328 19 C -0.036 4.036 20 C -0.231 4.231 21 S 0.014 5.986 22 C 0.216 3.784 23 O -0.413 6.413 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.152 0.848 28 H 0.175 0.825 29 H 0.296 0.704 30 H 0.211 0.789 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.114 0.886 34 H 0.174 0.826 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.052 -22.080 -0.764 24.704 hybrid contribution -0.625 1.069 1.126 1.673 sum 10.427 -21.012 0.362 23.460 Atomic orbital electron populations 1.69984 1.07773 1.28425 1.51462 1.25812 0.95618 1.02829 0.93939 0.86082 0.80148 0.79694 0.79671 1.19178 1.19585 1.17030 1.21102 0.89877 0.94017 1.51533 0.92909 1.19393 0.97583 0.90684 0.97967 1.30119 1.20557 1.06877 1.12932 1.05524 0.78727 0.73221 0.73208 1.93583 1.79155 1.77496 1.45197 1.93576 1.78749 1.78066 1.46601 1.54777 1.66525 1.30717 1.27973 1.22103 0.76261 0.91833 0.80159 1.90938 1.39728 1.75379 1.33809 1.21971 1.05877 0.86326 0.88903 1.47732 1.16618 1.56643 1.11789 1.21890 0.82154 1.01054 0.98545 1.24504 0.95442 1.08775 0.94356 1.87628 1.18922 1.71206 1.20830 1.22128 0.87804 0.81686 0.86813 1.90855 1.19500 1.50635 1.80317 0.92046 0.94095 0.95765 0.84796 0.82497 0.70390 0.78879 0.84102 0.83777 0.88608 0.82588 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.90 13.96 21.45 0.30 -56.60 16 2 C 0.02 0.98 5.47 84.66 0.46 1.44 16 3 Si 0.92 43.67 27.47 68.60 1.88 45.55 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 7 C -0.53 -29.36 9.66 25.60 0.25 -29.11 16 8 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 9 C -0.02 -0.80 4.05 29.85 0.12 -0.67 16 10 C -0.57 -20.09 5.82 71.98 0.42 -19.67 16 11 S 2.59 82.99 5.11 -56.49 -0.29 82.70 16 12 O -0.96 -32.89 18.08 -127.65 -2.31 -35.19 16 13 O -0.98 -40.96 17.04 -120.72 -2.06 -43.02 16 14 N -1.03 -19.69 5.60 -173.52 -0.97 -20.66 16 15 C 0.51 10.85 7.64 87.66 0.67 11.52 16 16 O -0.53 -16.92 14.53 13.33 0.19 -16.72 16 17 C 0.10 1.05 6.04 85.64 0.52 1.56 16 18 N -0.59 -9.02 2.27 -844.70 -1.91 -10.94 16 19 C 0.09 0.60 6.80 86.88 0.59 1.19 16 20 C -0.08 -0.61 7.42 72.12 0.54 -0.07 16 21 S -0.21 -4.16 23.25 -56.49 -1.31 -5.48 16 22 C 0.54 13.06 8.27 130.07 1.08 14.14 16 23 O -0.53 -17.52 17.28 -4.10 -0.07 -17.59 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H 0.04 1.84 7.20 -2.39 -0.02 1.82 16 26 H 0.02 1.15 7.57 -2.38 -0.02 1.13 16 27 H 0.13 4.76 7.19 -2.39 -0.02 4.74 16 28 H 0.16 4.45 8.14 -2.39 -0.02 4.43 16 29 H 0.45 3.82 8.79 -96.74 -0.85 2.97 16 30 H 0.19 -0.48 8.08 -2.39 -0.02 -0.50 16 31 H 0.14 1.28 7.66 -2.38 -0.02 1.26 16 32 H 0.14 -0.32 8.14 -2.39 -0.02 -0.33 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.16 0.05 8.14 -2.38 -0.02 0.03 16 35 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -94.80 329.99 -1.67 -96.47 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: 0.23 Total: 1.15 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 4.64 Total: -19.67 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -2.59 Total: -88.20 kcal Atomic # 8 Polarization: -108.28 SS G_CDS: -4.24 Total: -112.53 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Atomic # 16 Polarization: 78.83 SS G_CDS: -1.60 Total: 77.23 kcal Total: -94.80 -1.67 -96.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.615 kcal (2) G-P(sol) polarization free energy of solvation -94.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds