Wall clock time and date at job start Fri Apr 10 2020 18:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99642 * 2 1 4 4 H 1.48505 * 109.46915 * 269.99741 * 3 2 1 5 5 H 1.48503 * 109.47182 * 29.99711 * 3 2 1 6 6 H 1.48502 * 109.47258 * 149.99991 * 3 2 1 7 7 C 1.37874 * 120.00802 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99186 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00512 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47419 * 179.97438 * 9 7 2 11 11 C 1.34781 * 120.00466 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99286 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00124 * 180.02562 * 11 10 9 14 14 H 1.08996 * 109.47223 * 54.99899 * 13 11 10 15 15 O 1.42902 * 109.47139 * 175.00240 * 13 11 10 16 16 C 1.53003 * 109.47140 * 294.99824 * 13 11 10 17 17 H 1.08996 * 109.47123 * 300.00135 * 16 13 11 18 18 O 1.42909 * 109.47057 * 60.00119 * 16 13 11 19 19 C 1.50703 * 109.47168 * 180.02562 * 16 13 11 20 20 N 1.27931 * 124.23322 * 105.00154 * 19 16 13 21 21 C 1.34666 * 117.84110 * 180.02562 * 20 19 16 22 22 C 1.40965 * 129.69137 * 180.02562 * 21 20 19 23 23 C 1.36181 * 120.42929 * 180.02562 * 22 21 20 24 24 C 1.38794 * 120.77727 * 359.95739 * 23 22 21 25 25 C 1.37659 * 120.06372 * 0.02562 * 24 23 22 26 26 C 1.39333 * 119.95394 * 0.30081 * 25 24 23 27 27 S 1.70645 * 124.23793 * 285.02318 * 19 16 13 28 28 H 0.97000 * 120.00478 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47270 * 59.99840 * 9 7 2 30 30 H 1.08999 * 109.47356 * 299.99859 * 9 7 2 31 31 H 0.97008 * 119.99745 * 359.97438 * 10 9 7 32 32 H 0.96700 * 114.00212 * 59.99790 * 15 13 11 33 33 H 0.96700 * 113.99685 * 60.00489 * 18 16 13 34 34 H 1.08003 * 119.78806 * 359.97438 * 22 21 20 35 35 H 1.07997 * 119.61551 * 179.97438 * 23 22 21 36 36 H 1.08001 * 119.96943 * 180.02562 * 24 23 22 37 37 H 1.08002 * 120.01883 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1938 0.0000 10 7 4.0001 -2.5750 -0.0001 11 6 5.3252 -2.8213 -0.0001 12 8 6.1132 -1.8993 -0.0006 13 6 5.8276 -4.2420 -0.0008 14 1 5.3930 -4.7806 -0.8429 15 8 7.2518 -4.2436 -0.1181 16 6 5.4228 -4.9267 1.3062 17 1 5.8573 -4.3881 2.1482 18 8 3.9985 -4.9252 1.4236 19 6 5.9257 -6.3474 1.3057 20 7 6.9295 -6.7557 1.9857 21 6 7.2682 -8.0554 1.8885 22 6 8.3128 -8.7630 2.5172 23 6 8.4859 -10.0927 2.2796 24 6 7.6398 -10.7761 1.4174 25 6 6.6110 -10.1109 0.7896 26 6 6.4229 -8.7489 1.0155 27 16 5.2280 -7.6126 0.3979 28 1 -0.4851 0.8400 -0.0004 29 1 3.8746 -0.6806 0.8905 30 1 3.8753 -0.6794 -0.8894 31 1 3.3697 -3.3124 -0.0001 32 1 7.7060 -3.7807 0.5991 33 1 3.5443 -5.3882 0.7063 34 1 8.9808 -8.2471 3.1911 35 1 9.2907 -10.6218 2.7681 36 1 7.7887 -11.8308 1.2387 37 1 5.9528 -10.6435 0.1191 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787627916.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:49 Heat of formation + Delta-G solvation = -73.244525 kcal Electronic energy + Delta-G solvation = -23965.686337 eV Core-core repulsion = 20220.795216 eV Total energy + Delta-G solvation = -3744.891122 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -40.80297 -39.91334 -37.96127 -36.71205 -36.19800 -34.28981 -32.39393 -31.51209 -31.00924 -29.43123 -27.83064 -25.69805 -24.03563 -22.74321 -21.97093 -21.53337 -20.26569 -18.97258 -18.17727 -17.72212 -17.15242 -16.78533 -16.13737 -16.08346 -15.66397 -15.07474 -14.95558 -14.72214 -14.53121 -14.22811 -13.97200 -13.57044 -13.45806 -13.08402 -12.85286 -12.44656 -12.34316 -12.30401 -12.20316 -11.71985 -11.63440 -11.22342 -11.05815 -10.79665 -10.54111 -10.45354 -10.00282 -9.95351 -9.51557 -9.27710 -8.93907 -8.79851 -8.47477 -8.23563 -6.22417 -4.24789 0.02644 0.75822 0.84764 1.33988 1.96018 2.85280 3.25389 3.30224 3.31836 3.34516 3.40752 3.73554 3.79569 4.20574 4.32259 4.35734 4.40966 4.46673 4.58585 4.72321 4.81351 4.91804 5.12812 5.14491 5.24957 5.42993 5.48673 5.73052 5.80132 5.97340 6.28984 6.73924 7.02115 7.02809 7.11038 7.27363 7.33395 7.38689 8.05598 8.44091 8.67147 8.80761 9.37107 10.89399 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.030611 B = 0.002775 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.472028 B =10087.431228 C =10616.252006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.219 3.781 10 N -0.686 5.686 11 C 0.477 3.523 12 O -0.546 6.546 13 C 0.068 3.932 14 H 0.124 0.876 15 O -0.525 6.525 16 C 0.154 3.846 17 H 0.139 0.861 18 O -0.520 6.520 19 C 0.073 3.927 20 N -0.450 5.450 21 C 0.085 3.915 22 C -0.062 4.062 23 C -0.108 4.108 24 C -0.102 4.102 25 C -0.071 4.071 26 C -0.179 4.179 27 S 0.111 5.889 28 H 0.268 0.732 29 H 0.027 0.973 30 H 0.022 0.978 31 H 0.398 0.602 32 H 0.387 0.613 33 H 0.378 0.622 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.879 -23.066 2.509 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.099 0.901 9 C 0.096 3.904 10 N -0.336 5.336 11 C 0.260 3.740 12 O -0.425 6.425 13 C 0.002 3.998 14 H 0.141 0.859 15 O -0.331 6.331 16 C 0.089 3.911 17 H 0.157 0.843 18 O -0.324 6.324 19 C -0.213 4.213 20 N -0.164 5.164 21 C -0.036 4.036 22 C -0.082 4.082 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.094 4.094 26 C -0.298 4.298 27 S 0.368 5.632 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.234 0.766 32 H 0.237 0.763 33 H 0.226 0.774 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.637 -21.851 2.169 25.848 hybrid contribution 0.688 0.116 0.412 0.811 sum 14.325 -21.735 2.581 26.159 Atomic orbital electron populations 1.69873 1.06182 1.27430 1.49361 1.24784 0.94785 0.99125 0.93882 0.86835 0.80584 0.83336 0.79028 1.19863 1.20881 1.18544 1.21053 0.88336 0.95279 1.53338 0.90106 1.19552 0.95473 0.78436 0.96889 1.46245 1.05307 1.11445 1.70627 1.20873 0.83967 0.90661 0.78506 1.90692 1.55559 1.45240 1.51055 1.22612 0.84653 0.94737 0.97759 0.85879 1.86575 1.14665 1.78794 1.53017 1.21281 0.82495 0.86916 1.00393 0.84313 1.86889 1.15055 1.78591 1.51866 1.27403 0.95630 1.01517 0.96744 1.66042 1.14559 1.13868 1.21895 1.19202 0.98129 0.87667 0.98589 1.20431 0.95387 0.93765 0.98655 1.20754 0.99829 0.93807 0.98522 1.21159 0.94490 1.00247 0.96522 1.20371 0.98579 0.90487 0.99973 1.23883 1.01297 0.99933 1.04718 1.83798 1.31554 1.00481 1.47349 0.92245 0.95540 0.96017 0.76641 0.76329 0.77351 0.84648 0.84677 0.84663 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.54 -14.60 9.83 -34.45 -0.34 -14.93 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 C 0.22 5.27 4.50 -5.20 -0.02 5.25 16 10 N -0.69 -13.30 5.16 -61.48 -0.32 -13.61 16 11 C 0.48 8.70 7.14 -10.99 -0.08 8.62 16 12 O -0.55 -12.05 16.32 -14.30 -0.23 -12.29 16 13 C 0.07 0.91 3.18 -27.88 -0.09 0.82 16 14 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 15 O -0.53 -7.42 12.62 -55.09 -0.69 -8.11 16 16 C 0.15 1.88 3.24 -27.88 -0.09 1.79 16 17 H 0.14 1.78 8.14 -51.93 -0.42 1.36 16 18 O -0.52 -6.32 11.22 -35.23 -0.40 -6.72 16 19 C 0.07 0.88 5.90 -13.90 -0.08 0.80 16 20 N -0.45 -5.95 10.57 -9.08 -0.10 -6.04 16 21 C 0.08 1.01 7.00 -84.96 -0.59 0.42 16 22 C -0.06 -0.57 10.05 -39.29 -0.39 -0.97 16 23 C -0.11 -0.74 9.94 -40.12 -0.40 -1.14 16 24 C -0.10 -0.67 10.04 -39.59 -0.40 -1.06 16 25 C -0.07 -0.58 10.07 -39.39 -0.40 -0.98 16 26 C -0.18 -1.93 6.56 -38.55 -0.25 -2.18 16 27 S 0.11 1.12 22.41 -107.50 -2.41 -1.29 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 30 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 31 H 0.40 6.68 6.56 -40.82 -0.27 6.41 16 32 H 0.39 4.78 8.79 45.56 0.40 5.19 16 33 H 0.38 3.25 8.21 45.56 0.37 3.62 16 34 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -35.08 336.39 -8.58 -43.66 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -2.37 Total: 9.62 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -3.23 Total: -1.48 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.36 Total: -45.07 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.32 Total: -27.12 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.41 Total: -1.29 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.08 -8.58 -43.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627916.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.586 kcal (2) G-P(sol) polarization free energy of solvation -35.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds