Wall clock time and date at job start Fri Apr 10 2020 18:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99642 * 2 1 4 4 H 1.48505 * 109.46915 * 269.99741 * 3 2 1 5 5 H 1.48503 * 109.47182 * 29.99711 * 3 2 1 6 6 H 1.48502 * 109.47258 * 149.99991 * 3 2 1 7 7 C 1.37874 * 120.00802 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99186 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00512 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47419 * 179.97438 * 9 7 2 11 11 C 1.34781 * 120.00466 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99286 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00124 * 180.02562 * 11 10 9 14 14 H 1.08996 * 109.47223 * 54.99899 * 13 11 10 15 15 O 1.42902 * 109.47139 * 175.00240 * 13 11 10 16 16 C 1.53003 * 109.47140 * 294.99824 * 13 11 10 17 17 H 1.08996 * 109.47123 * 300.00135 * 16 13 11 18 18 O 1.42909 * 109.47057 * 60.00119 * 16 13 11 19 19 C 1.50703 * 109.47168 * 180.02562 * 16 13 11 20 20 N 1.27931 * 124.23322 * 105.00154 * 19 16 13 21 21 C 1.34666 * 117.84110 * 180.02562 * 20 19 16 22 22 C 1.40965 * 129.69137 * 180.02562 * 21 20 19 23 23 C 1.36181 * 120.42929 * 180.02562 * 22 21 20 24 24 C 1.38794 * 120.77727 * 359.95739 * 23 22 21 25 25 C 1.37659 * 120.06372 * 0.02562 * 24 23 22 26 26 C 1.39333 * 119.95394 * 0.30081 * 25 24 23 27 27 S 1.70645 * 124.23793 * 285.02318 * 19 16 13 28 28 H 0.97000 * 120.00478 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47270 * 59.99840 * 9 7 2 30 30 H 1.08999 * 109.47356 * 299.99859 * 9 7 2 31 31 H 0.97008 * 119.99745 * 359.97438 * 10 9 7 32 32 H 0.96700 * 114.00212 * 59.99790 * 15 13 11 33 33 H 0.96700 * 113.99685 * 60.00489 * 18 16 13 34 34 H 1.08003 * 119.78806 * 359.97438 * 22 21 20 35 35 H 1.07997 * 119.61551 * 179.97438 * 23 22 21 36 36 H 1.08001 * 119.96943 * 180.02562 * 24 23 22 37 37 H 1.08002 * 120.01883 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1938 0.0000 10 7 4.0001 -2.5750 -0.0001 11 6 5.3252 -2.8213 -0.0001 12 8 6.1132 -1.8993 -0.0006 13 6 5.8276 -4.2420 -0.0008 14 1 5.3930 -4.7806 -0.8429 15 8 7.2518 -4.2436 -0.1181 16 6 5.4228 -4.9267 1.3062 17 1 5.8573 -4.3881 2.1482 18 8 3.9985 -4.9252 1.4236 19 6 5.9257 -6.3474 1.3057 20 7 6.9295 -6.7557 1.9857 21 6 7.2682 -8.0554 1.8885 22 6 8.3128 -8.7630 2.5172 23 6 8.4859 -10.0927 2.2796 24 6 7.6398 -10.7761 1.4174 25 6 6.6110 -10.1109 0.7896 26 6 6.4229 -8.7489 1.0155 27 16 5.2280 -7.6126 0.3979 28 1 -0.4851 0.8400 -0.0004 29 1 3.8746 -0.6806 0.8905 30 1 3.8753 -0.6794 -0.8894 31 1 3.3697 -3.3124 -0.0001 32 1 7.7060 -3.7807 0.5991 33 1 3.5443 -5.3882 0.7063 34 1 8.9808 -8.2471 3.1911 35 1 9.2907 -10.6218 2.7681 36 1 7.7887 -11.8308 1.2387 37 1 5.9528 -10.6435 0.1191 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787627916.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:49 Heat of formation + Delta-G solvation = -102.325896 kcal Electronic energy + Delta-G solvation = -23966.947400 eV Core-core repulsion = 20220.795216 eV Total energy + Delta-G solvation = -3746.152185 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66865 -41.10760 -39.06944 -37.53498 -37.37574 -36.05431 -34.40467 -32.11467 -31.91218 -30.73051 -29.30879 -26.82303 -24.87345 -23.95426 -23.30916 -22.35857 -21.77591 -19.78477 -19.61978 -18.76816 -18.40634 -17.96146 -17.53104 -17.10439 -16.64868 -16.33163 -16.05386 -15.87728 -15.74174 -15.37122 -14.99787 -14.90438 -14.56373 -14.53255 -14.21531 -13.98541 -13.50322 -13.21120 -13.07653 -12.86722 -12.85481 -12.70945 -12.55673 -11.95032 -11.88920 -11.65161 -11.59724 -11.17743 -10.90645 -10.88160 -10.62609 -9.98627 -9.69933 -9.15527 -8.38183 -6.44636 -0.71464 0.09829 0.14431 0.55664 1.19733 1.32921 1.35755 1.46633 1.48612 2.12956 2.29031 2.62469 2.64693 2.77073 2.97139 3.30534 3.43090 3.49802 3.68661 3.74348 3.87689 4.06910 4.27860 4.30954 4.42530 4.61187 4.76721 4.89280 5.01895 5.08976 5.24917 5.26346 5.40418 5.44173 5.75630 6.06673 6.22001 6.32849 6.48933 6.55849 6.75138 7.13237 7.29381 8.76290 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.030611 B = 0.002775 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.472028 B =10087.431228 C =10616.252006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.228 3.772 10 N -0.684 5.684 11 C 0.478 3.522 12 O -0.585 6.585 13 C 0.086 3.914 14 H 0.149 0.851 15 O -0.532 6.532 16 C 0.166 3.834 17 H 0.128 0.872 18 O -0.533 6.533 19 C 0.051 3.949 20 N -0.472 5.472 21 C 0.047 3.953 22 C -0.079 4.079 23 C -0.100 4.100 24 C -0.090 4.090 25 C -0.083 4.083 26 C -0.198 4.198 27 S 0.140 5.860 28 H 0.272 0.728 29 H 0.013 0.987 30 H 0.014 0.986 31 H 0.411 0.589 32 H 0.394 0.606 33 H 0.393 0.607 34 H 0.140 0.860 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.176 -25.441 2.230 29.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.758 3.242 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.105 3.895 10 N -0.336 5.336 11 C 0.264 3.736 12 O -0.466 6.466 13 C 0.021 3.979 14 H 0.167 0.833 15 O -0.337 6.337 16 C 0.102 3.898 17 H 0.145 0.855 18 O -0.339 6.339 19 C -0.234 4.234 20 N -0.187 5.187 21 C -0.073 4.073 22 C -0.100 4.100 23 C -0.120 4.120 24 C -0.111 4.111 25 C -0.106 4.106 26 C -0.317 4.317 27 S 0.396 5.604 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.249 0.751 32 H 0.244 0.756 33 H 0.244 0.756 34 H 0.158 0.842 35 H 0.186 0.814 36 H 0.190 0.810 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.930 -24.262 1.884 28.549 hybrid contribution 0.337 0.638 0.525 0.892 sum 15.267 -23.623 2.409 28.230 Atomic orbital electron populations 1.69972 1.07601 1.28521 1.50771 1.25561 0.95511 1.02517 0.93732 0.85910 0.79268 0.79608 0.79409 1.18984 1.19975 1.18577 1.21256 0.89732 0.94686 1.52369 0.91851 1.19163 0.93646 0.80931 0.95782 1.46062 1.06347 1.10062 1.71084 1.21670 0.82899 0.92419 0.76653 1.90668 1.56340 1.47160 1.52475 1.22533 0.84319 0.91439 0.99624 0.83334 1.86559 1.14867 1.78730 1.53585 1.20962 0.82474 0.87372 0.99005 0.85455 1.86856 1.15110 1.79027 1.52896 1.27164 0.96379 1.01685 0.98152 1.65998 1.15125 1.15145 1.22460 1.19571 0.99799 0.87560 1.00359 1.20728 0.95227 0.94981 0.99105 1.21203 1.00237 0.92837 0.97759 1.21675 0.92894 1.01862 0.94667 1.20787 0.99585 0.89593 1.00600 1.24210 1.01380 1.01156 1.04962 1.83507 1.31034 0.99365 1.46450 0.91903 0.96940 0.96801 0.75130 0.75600 0.75617 0.84227 0.81373 0.80962 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.96 21.45 0.30 -54.85 16 2 C 0.03 1.52 5.47 84.65 0.46 1.99 16 3 Si 0.93 43.95 27.47 68.60 1.88 45.83 16 4 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -12.23 6.54 99.48 0.65 -11.58 16 7 C -0.54 -29.51 9.83 25.60 0.25 -29.26 16 8 H 0.06 3.59 7.84 -2.91 -0.02 3.57 16 9 C 0.23 11.07 4.50 85.63 0.38 11.46 16 10 N -0.68 -26.46 5.16 -466.81 -2.41 -28.87 16 11 C 0.48 17.34 7.14 87.65 0.63 17.97 16 12 O -0.58 -25.94 16.32 15.95 0.26 -25.67 16 13 C 0.09 2.24 3.18 29.85 0.09 2.34 16 14 H 0.15 3.14 8.14 -2.39 -0.02 3.12 16 15 O -0.53 -14.75 12.62 -129.99 -1.64 -16.39 16 16 C 0.17 4.05 3.24 29.85 0.10 4.15 16 17 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 18 O -0.53 -12.74 11.22 -148.98 -1.67 -14.41 16 19 C 0.05 1.22 5.90 88.68 0.52 1.74 16 20 N -0.47 -12.57 10.57 -182.51 -1.93 -14.50 16 21 C 0.05 1.10 7.00 39.78 0.28 1.37 16 22 C -0.08 -1.38 10.05 22.46 0.23 -1.15 16 23 C -0.10 -1.05 9.94 21.92 0.22 -0.84 16 24 C -0.09 -0.83 10.04 22.27 0.22 -0.60 16 25 C -0.08 -1.13 10.07 22.40 0.23 -0.90 16 26 C -0.20 -4.00 6.56 22.94 0.15 -3.85 16 27 S 0.14 2.66 22.41 -56.49 -1.27 1.39 16 28 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 30 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 31 H 0.41 13.66 6.56 -92.70 -0.61 13.05 16 32 H 0.39 9.78 8.79 -74.06 -0.65 9.13 16 33 H 0.39 6.40 8.21 -74.06 -0.61 5.79 16 34 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 36 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 37 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -76.37 336.39 -3.47 -79.84 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -0.76 Total: 23.20 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 3.76 Total: 4.42 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -4.04 Total: -98.22 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -3.05 Total: -56.47 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.27 Total: 1.39 kcal Total: -76.37 -3.47 -79.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627916.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.487 kcal (2) G-P(sol) polarization free energy of solvation -76.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds