Wall clock time and date at job start Fri Apr 10 2020 18:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35109 * 126.40808 * 2 1 4 4 Cl 1.73596 * 125.66537 * 359.97438 * 3 2 1 5 5 N 1.30621 * 108.66802 * 180.28264 * 3 2 1 6 6 C 1.34200 * 109.25633 * 359.73383 * 5 3 2 7 7 C 1.34601 * 108.05615 * 359.97438 * 6 5 3 8 8 S 1.76199 * 126.58442 * 180.02562 * 7 6 5 9 9 O 1.42096 * 106.40321 * 336.48124 * 8 7 6 10 10 O 1.42108 * 106.39883 * 203.56132 * 8 7 6 11 11 N 1.65597 * 107.22117 * 90.02282 * 8 7 6 12 12 C 1.46499 * 119.99926 * 64.72196 * 11 8 7 13 13 C 1.50700 * 109.46995 * 165.27893 * 12 11 8 14 14 O 1.21283 * 120.00108 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99877 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99725 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00280 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99537 * 180.02562 * 16 15 13 19 19 N 1.31405 * 120.00211 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99451 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47023 * 90.00497 * 20 18 16 22 22 H 1.48501 * 109.46925 * 209.99878 * 20 18 16 23 23 H 1.48498 * 109.47569 * 330.00026 * 20 18 16 24 24 H 1.08997 * 109.47317 * 270.16548 * 1 2 3 25 25 H 1.09000 * 109.46742 * 30.17165 * 1 2 3 26 26 H 1.09001 * 109.46755 * 150.16404 * 1 2 3 27 27 H 1.08000 * 125.97122 * 180.02562 * 6 5 3 28 28 H 0.97001 * 120.00224 * 245.00409 * 11 8 7 29 29 H 1.09007 * 109.47241 * 285.27714 * 12 11 8 30 30 H 1.08995 * 109.47308 * 45.27753 * 12 11 8 31 31 H 0.96996 * 120.00031 * 0.02562 * 15 13 12 32 32 H 0.97004 * 119.99852 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0874 0.0000 4 17 1.7326 2.7391 -0.0006 5 7 3.5110 0.6894 -0.0061 6 6 3.5466 -0.6522 -0.0043 7 6 2.2783 -1.1031 0.0038 8 16 1.7629 -2.7880 0.0100 9 8 2.8376 -3.5384 -0.5387 10 8 0.4475 -2.8071 -0.5275 11 7 1.6278 -3.2535 1.5934 12 6 0.6233 -2.6287 2.4575 13 6 0.4543 -3.4522 3.7082 14 8 1.1082 -4.4620 3.8624 15 7 -0.4235 -3.0666 4.6555 16 6 -0.5776 -3.8162 5.7930 17 1 0.0047 -4.7153 5.9303 18 6 -1.4830 -3.4189 6.7694 19 7 -2.1919 -2.3251 6.6021 20 14 -1.6935 -4.4406 8.3190 21 1 -0.7447 -3.9654 9.3578 22 1 -3.0850 -4.3011 8.8186 23 1 -1.4182 -5.8673 8.0126 24 1 -0.3634 0.0030 1.0276 25 1 -0.3633 0.8885 -0.5165 26 1 -0.3633 -0.8915 -0.5113 27 1 4.4371 -1.2632 -0.0078 28 1 2.2166 -3.9371 1.9499 29 1 0.9492 -1.6236 2.7256 30 1 -0.3277 -2.5731 1.9278 31 1 -0.9468 -2.2593 4.5320 32 1 -2.8242 -2.0480 7.2836 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796218327.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:15 Heat of formation + Delta-G solvation = -74.085998 kcal Electronic energy + Delta-G solvation = -22720.494667 eV Core-core repulsion = 18869.593863 eV Total energy + Delta-G solvation = -3850.900804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.033 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -43.43667 -40.27741 -38.59271 -38.25940 -37.18488 -36.36626 -35.48224 -35.36388 -33.32656 -31.09508 -28.83076 -28.21009 -26.18815 -23.69752 -22.94836 -21.43510 -20.62737 -20.06807 -19.38794 -18.84702 -17.69122 -17.52722 -17.30895 -17.11481 -16.51693 -16.26658 -16.05098 -15.87533 -15.36368 -15.13086 -14.36454 -14.21432 -14.11966 -13.92304 -13.60826 -13.42538 -13.36462 -13.23169 -13.14075 -12.91739 -12.83337 -12.58702 -12.42787 -12.12024 -11.58783 -11.54612 -11.12449 -10.82549 -10.47340 -10.16956 -10.05722 -8.49292 -5.97884 -0.93610 -0.04591 0.02264 1.37764 1.43361 1.45021 1.55974 1.57764 1.83292 1.95149 2.29934 2.49010 2.99122 3.17469 3.19452 3.53249 3.66137 3.92114 4.11185 4.23925 4.31396 4.36635 4.57527 4.69016 4.70438 5.10291 5.38098 5.41259 5.83662 5.98104 6.26905 6.52973 7.08181 7.48263 8.01003 8.67325 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.003643 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.330752 B = 7683.275359 C = 8850.407717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.389 5.389 3 C 0.276 3.724 4 Cl 0.069 6.931 5 N -0.500 5.500 6 C 0.109 3.891 7 C -0.594 4.594 8 S 2.755 3.245 9 O -0.959 6.959 10 O -0.963 6.963 11 N -1.095 6.095 12 C 0.114 3.886 13 C 0.434 3.566 14 O -0.623 6.623 15 N -0.561 5.561 16 C -0.336 4.336 17 H 0.083 0.917 18 C -0.006 4.006 19 N -0.914 5.914 20 Si 0.990 3.010 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.273 1.273 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.216 0.784 28 H 0.429 0.571 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.401 0.599 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 10.095 -13.319 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.071 5.071 3 C -0.014 4.014 4 Cl 0.096 6.904 5 N -0.222 5.222 6 C -0.048 4.048 7 C -0.790 4.790 8 S 2.839 3.161 9 O -0.948 6.948 10 O -0.952 6.952 11 N -0.859 5.859 12 C -0.016 4.016 13 C 0.220 3.780 14 O -0.510 6.510 15 N -0.197 5.197 16 C -0.466 4.466 17 H 0.101 0.899 18 C -0.207 4.207 19 N -0.554 5.554 20 Si 0.814 3.186 21 H -0.197 1.197 22 H -0.197 1.197 23 H -0.198 1.198 24 H 0.133 0.867 25 H 0.141 0.859 26 H 0.143 0.857 27 H 0.233 0.767 28 H 0.267 0.733 29 H 0.125 0.875 30 H 0.139 0.861 31 H 0.235 0.765 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.660 9.862 -13.892 17.426 hybrid contribution -0.596 0.123 1.273 1.411 sum 3.064 9.985 -12.619 16.381 Atomic orbital electron populations 1.23290 0.72603 1.09136 1.07684 1.45112 1.09113 1.02832 1.50094 1.24092 0.86845 0.86123 1.04333 1.98456 1.88508 1.06674 1.96737 1.70380 1.17515 1.12564 1.21757 1.22873 0.96381 0.90167 0.95352 1.33802 1.00519 1.14972 1.29708 1.00240 0.73027 0.71434 0.71396 1.93609 1.56798 1.68187 1.76245 1.93518 1.38453 1.86223 1.77032 1.55128 1.47536 1.53060 1.30151 1.20987 0.93801 0.96333 0.90510 1.20487 0.83360 0.87829 0.86351 1.90499 1.50593 1.29382 1.80545 1.41831 1.35991 1.25184 1.16735 1.19687 1.22646 1.07939 0.96316 0.89949 1.25981 0.95178 0.97606 1.01922 1.69641 1.25265 1.23628 1.36840 0.84967 0.77875 0.78277 0.77502 1.19748 1.19675 1.19762 0.86713 0.85883 0.85662 0.76732 0.73253 0.87549 0.86135 0.76461 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 10.74 127.77 1.37 1.55 16 2 N -0.39 -7.92 3.16 -538.01 -1.70 -9.62 16 3 C 0.28 6.09 8.51 180.21 1.53 7.63 16 4 Cl 0.07 1.15 28.77 -2.72 -0.08 1.07 16 5 N -0.50 -12.69 11.26 -191.05 -2.15 -14.84 16 6 C 0.11 2.51 11.63 83.50 0.97 3.48 16 7 C -0.59 -13.37 6.99 83.04 0.58 -12.79 16 8 S 2.76 66.90 5.83 -56.49 -0.33 66.57 16 9 O -0.96 -27.31 17.86 -128.00 -2.29 -29.60 16 10 O -0.96 -25.25 14.88 -128.00 -1.90 -27.15 16 11 N -1.09 -29.63 5.93 -190.79 -1.13 -30.76 16 12 C 0.11 3.24 6.70 85.63 0.57 3.82 16 13 C 0.43 18.33 7.85 87.66 0.69 19.02 16 14 O -0.62 -31.05 15.30 -3.04 -0.05 -31.10 16 15 N -0.56 -25.97 5.29 -306.98 -1.62 -27.59 16 16 C -0.34 -17.76 9.68 84.04 0.81 -16.94 16 17 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 18 C -0.01 -0.30 5.50 84.93 0.47 0.17 16 19 N -0.91 -45.91 13.05 21.66 0.28 -45.62 16 20 Si 0.99 40.52 29.55 68.60 2.03 42.55 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.12 1.15 7.81 -2.39 -0.02 1.13 16 26 H 0.13 1.96 5.64 -2.39 -0.01 1.94 16 27 H 0.22 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.43 12.54 7.70 -96.74 -0.75 11.80 16 29 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 30 H 0.12 2.86 7.76 -2.39 -0.02 2.84 16 31 H 0.40 17.17 7.90 -92.71 -0.73 16.44 16 32 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 Total: -1.00 -69.93 316.44 -2.20 -72.13 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -0.26 Total: 28.04 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 7.00 Total: 5.93 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -6.32 Total: -128.43 kcal Atomic # 8 Polarization: -83.61 SS G_CDS: -4.24 Total: -87.85 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: 66.90 SS G_CDS: -0.33 Total: 66.57 kcal Atomic # 17 Polarization: 1.15 SS G_CDS: -0.08 Total: 1.07 kcal Total: -69.93 -2.20 -72.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796218327.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.959 kcal (2) G-P(sol) polarization free energy of solvation -69.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds