Wall clock time and date at job start Fri Apr 10 2020 18:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 119.99973 * 2 1 4 4 H 1.48496 * 109.47290 * 270.00697 * 3 2 1 5 5 H 1.48501 * 109.46837 * 30.00448 * 3 2 1 6 6 H 1.48492 * 109.47388 * 150.00124 * 3 2 1 7 7 C 1.38953 * 120.00513 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99616 * 359.97438 * 7 2 1 9 9 N 1.37088 * 120.00438 * 179.97438 * 7 2 1 10 10 C 1.34770 * 120.00466 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99719 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00682 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47562 * 180.02562 * 12 10 9 14 14 C 1.34772 * 120.00304 * 180.02562 * 13 12 10 15 15 O 1.21800 * 119.99837 * 5.28598 * 14 13 12 16 16 C 1.41654 * 120.00256 * 185.29220 * 14 13 12 17 17 C 1.38721 * 126.80671 * 92.77648 * 16 14 13 18 18 Cl 1.73605 * 125.91143 * 359.97438 * 17 16 14 19 19 N 1.32411 * 108.16977 * 180.02562 * 17 16 14 20 20 C 1.33210 * 109.83474 * 359.97438 * 19 17 16 21 21 C 1.40662 * 131.77414 * 179.97438 * 20 19 17 22 22 C 1.36288 * 119.38151 * 180.02562 * 21 20 19 23 23 C 1.40166 * 119.61252 * 359.97438 * 22 21 20 24 24 C 1.35264 * 120.12253 * 0.02562 * 23 22 21 25 25 N 1.35951 * 120.63812 * 359.97438 * 24 23 22 26 26 H 0.97002 * 120.00199 * 359.97438 * 1 2 3 27 27 H 0.97008 * 120.00000 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.46816 * 59.99620 * 12 10 9 29 29 H 1.09000 * 109.46650 * 300.00390 * 12 10 9 30 30 H 0.97005 * 119.99992 * 0.02562 * 13 12 10 31 31 H 1.07994 * 120.30875 * 0.02562 * 21 20 19 32 32 H 1.08004 * 120.19090 * 180.27698 * 22 21 20 33 33 H 1.07994 * 119.94287 * 180.02562 * 23 22 21 34 34 H 1.07999 * 119.68216 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4954 2.0465 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5608 -2.3704 -0.0022 13 7 6.0492 -3.7516 -0.0026 14 6 7.3742 -3.9978 -0.0031 15 8 8.1649 -3.0765 0.0939 16 6 7.8473 -5.3282 -0.1166 17 6 8.1940 -5.9901 -1.2854 18 17 8.1241 -5.3290 -2.8891 19 7 8.5862 -7.2138 -0.9661 20 6 8.5130 -7.3821 0.3533 21 6 8.8122 -8.4835 1.1755 22 6 8.6407 -8.3777 2.5234 23 6 8.1702 -7.1756 3.0696 24 6 7.8880 -6.1277 2.2622 25 7 8.0563 -6.2249 0.9166 26 1 -0.4850 0.8400 0.0004 27 1 3.8648 -0.3632 -0.0014 28 1 5.9247 -1.8561 0.8872 29 1 5.9233 -1.8569 -0.8927 30 1 5.4188 -4.4889 -0.0025 31 1 9.1744 -9.4042 0.7428 32 1 8.8706 -9.2137 3.1674 33 1 8.0327 -7.0859 4.1370 34 1 7.5255 -5.2050 2.6905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804820034.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:23 Heat of formation + Delta-G solvation = 25.764355 kcal Electronic energy + Delta-G solvation = -23538.535362 eV Core-core repulsion = 19692.353538 eV Total energy + Delta-G solvation = -3846.181824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.062 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.29863 -39.77384 -38.41109 -37.86934 -36.74486 -34.66876 -34.18381 -33.85263 -31.87144 -30.73783 -30.02462 -27.79838 -24.93732 -24.15837 -23.56082 -22.63160 -20.74206 -19.78064 -19.03143 -18.27109 -17.49258 -17.14369 -16.72228 -16.20954 -15.85100 -15.55784 -15.35241 -14.99634 -14.92904 -14.71953 -14.10019 -13.78160 -13.20392 -13.11783 -12.95207 -12.59178 -12.35866 -12.25354 -12.18867 -11.59952 -11.52131 -11.46450 -11.28459 -10.74956 -10.69119 -10.22571 -10.10810 -9.75780 -9.14374 -9.11641 -8.85944 -8.36511 -8.30362 -6.45885 -3.98866 0.25477 0.57336 1.31284 1.83572 2.10862 2.55121 2.94967 3.00107 3.03041 3.08588 3.22793 3.48165 3.77323 3.98782 4.13451 4.30936 4.44019 4.47174 4.61623 4.75604 5.00323 5.08361 5.26277 5.50935 5.55603 5.63050 5.66228 5.68692 5.71420 5.94230 6.29324 6.45054 7.16961 7.36046 7.44978 7.91974 8.04158 8.38698 8.75998 9.23646 9.56192 10.66102 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.003073 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.379723 B = 9107.968046 C = 9839.874831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.578 6.578 12 C 0.104 3.896 13 N -0.689 5.689 14 C 0.596 3.404 15 O -0.523 6.523 16 C -0.105 4.105 17 C 0.168 3.832 18 Cl 0.023 6.977 19 N -0.481 5.481 20 C 0.251 3.749 21 C -0.081 4.081 22 C -0.088 4.088 23 C -0.132 4.132 24 C 0.064 3.936 25 N -0.327 5.327 26 H 0.276 0.724 27 H 0.375 0.625 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.415 0.585 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.590 -12.936 5.165 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.211 5.211 10 C 0.222 3.778 11 O -0.462 6.462 12 C -0.024 4.024 13 N -0.343 5.343 14 C 0.379 3.621 15 O -0.398 6.398 16 C -0.222 4.222 17 C 0.003 3.997 18 Cl 0.051 6.949 19 N -0.202 5.202 20 C 0.010 3.990 21 C -0.101 4.101 22 C -0.112 4.112 23 C -0.153 4.153 24 C -0.060 4.060 25 N 0.002 4.998 26 H 0.087 0.913 27 H 0.208 0.792 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.254 0.746 31 H 0.176 0.824 32 H 0.168 0.832 33 H 0.177 0.823 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 18.719 -13.269 4.513 23.384 hybrid contribution -0.074 1.759 0.326 1.791 sum 18.645 -11.510 4.839 22.440 Atomic orbital electron populations 1.69612 1.05737 1.27903 1.47845 1.25069 0.95530 0.98190 0.97030 0.86674 0.79888 0.83739 0.79216 1.19312 1.19935 1.19225 1.19441 0.78883 0.96838 1.48818 0.86044 1.42105 1.07731 1.06077 1.65169 1.19548 0.87847 0.84984 0.85434 1.90558 1.69062 1.30855 1.55733 1.21092 0.94221 0.83251 1.03827 1.45788 1.06391 1.09835 1.72319 1.15334 0.82660 0.85940 0.78203 1.90888 1.55510 1.45008 1.48396 1.19447 1.21636 0.94268 0.86856 1.21145 1.00760 0.90459 0.87347 1.98423 1.96597 1.82758 1.17100 1.70137 1.24097 1.16755 1.09244 1.20755 1.02029 0.87704 0.88550 1.20358 1.01249 0.96421 0.92105 1.21173 0.97371 0.98189 0.94466 1.20959 1.01180 0.92133 1.00995 1.21810 1.01921 1.02379 0.79872 1.42474 1.39682 1.11577 1.06107 0.91306 0.79204 0.89239 0.89141 0.74622 0.82370 0.83229 0.82312 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.56 13.96 55.50 0.77 -23.79 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 3 Si 0.88 18.60 27.74 -169.99 -4.71 13.88 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.13 6.52 56.52 0.37 -4.76 16 7 C -0.31 -8.42 10.16 -14.94 -0.15 -8.57 16 8 H 0.12 3.75 7.39 -52.48 -0.39 3.37 16 9 N -0.57 -12.96 5.09 -10.96 -0.06 -13.01 16 10 C 0.44 9.29 7.85 -10.99 -0.09 9.21 16 11 O -0.58 -14.30 15.24 5.54 0.08 -14.22 16 12 C 0.10 1.72 6.16 -5.19 -0.03 1.69 16 13 N -0.69 -11.02 5.51 -64.39 -0.36 -11.37 16 14 C 0.60 9.49 7.14 -14.96 -0.11 9.39 16 15 O -0.52 -9.50 17.10 5.10 0.09 -9.42 16 16 C -0.11 -1.56 6.52 -83.42 -0.54 -2.11 16 17 C 0.17 2.53 7.77 -17.12 -0.13 2.39 16 18 Cl 0.02 0.32 29.11 -51.86 -1.51 -1.19 16 19 N -0.48 -6.95 11.25 -9.38 -0.11 -7.05 16 20 C 0.25 3.04 7.77 -156.06 -1.21 1.83 16 21 C -0.08 -0.64 10.10 -39.37 -0.40 -1.04 16 22 C -0.09 -0.48 10.07 -39.56 -0.40 -0.88 16 23 C -0.13 -0.79 10.00 -39.92 -0.40 -1.19 16 24 C 0.06 0.58 10.82 -16.79 -0.18 0.40 16 25 N -0.33 -4.05 2.96 -60.11 -0.18 -4.23 16 26 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.37 7.42 5.76 -40.82 -0.24 7.19 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.41 6.81 7.40 -40.82 -0.30 6.51 16 31 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.15 0.31 8.06 -52.48 -0.42 -0.11 16 33 H 0.16 0.44 8.06 -52.49 -0.42 0.02 16 34 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -34.13 325.93 -7.43 -41.56 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -2.63 Total: 11.68 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: -3.74 Total: 12.24 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.08 Total: -59.45 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: 0.17 Total: -23.64 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.71 Total: 13.88 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.51 Total: -1.19 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.13 -7.43 -41.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820034.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.323 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds