Wall clock time and date at job start Fri Apr 10 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00093 * 2 1 4 4 C 1.50701 * 109.47169 * 90.00196 * 3 2 1 5 5 H 1.08000 * 119.99711 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99940 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00183 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99675 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46966 * 60.00679 * 8 6 4 10 10 H 1.48502 * 109.46772 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47409 * 300.00352 * 8 6 4 12 12 C 1.34772 * 120.00214 * 179.97438 * 2 1 3 13 13 O 1.21543 * 120.00274 * 185.80135 * 12 2 1 14 14 C 1.47970 * 120.00037 * 5.80373 * 12 2 1 15 15 N 1.32849 * 119.60411 * 6.20462 * 14 12 2 16 16 C 1.31293 * 121.77137 * 180.02562 * 15 14 12 17 17 C 1.39742 * 120.78050 * 0.02562 * 16 15 14 18 18 C 1.48357 * 120.42944 * 180.02562 * 17 16 15 19 19 N 1.34089 * 126.67819 * 179.69240 * 18 17 16 20 20 N 1.28985 * 107.26014 * 179.83247 * 19 18 17 21 21 N 1.28729 * 108.95926 * 0.43125 * 20 19 18 22 22 H 0.96992 * 125.33436 * 179.68996 * 21 20 19 23 23 N 1.28877 * 109.32675 * 359.72408 * 21 20 19 24 24 C 1.39631 * 119.13871 * 359.97438 * 17 16 15 25 25 C 1.38523 * 118.38183 * 359.72779 * 24 17 16 26 26 Cl 1.73593 * 120.42880 * 180.26117 * 25 24 17 27 27 H 1.09002 * 109.46990 * 95.62205 * 1 2 3 28 28 H 1.08999 * 109.47253 * 215.61772 * 1 2 3 29 29 H 1.08998 * 109.46722 * 335.62498 * 1 2 3 30 30 H 1.09008 * 109.47352 * 209.99935 * 3 2 1 31 31 H 1.09002 * 109.47402 * 329.99701 * 3 2 1 32 32 H 0.96999 * 120.00494 * 179.97438 * 7 6 4 33 33 H 1.08007 * 119.60830 * 180.02562 * 16 15 14 34 34 H 1.08008 * 120.80622 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0974 1.0961 2.2417 6 6 3.1270 2.8774 1.6727 7 7 3.5543 3.6176 0.6732 8 14 3.4377 3.4170 3.4340 9 1 4.2395 2.3818 4.1346 10 1 4.1804 4.7030 3.4339 11 1 2.1400 3.5953 4.1334 12 6 2.1388 -1.1671 0.0005 13 8 3.3496 -1.1698 0.1069 14 6 1.4047 -2.4454 -0.1285 15 7 0.0982 -2.4305 -0.3682 16 6 -0.5950 -3.5389 -0.4900 17 6 0.0237 -4.7861 -0.3699 18 6 -0.7670 -6.0337 -0.5094 19 7 -0.3040 -7.2892 -0.4238 20 7 -1.3078 -8.0800 -0.5988 21 7 -2.3662 -7.3748 -0.7973 22 1 -3.2543 -7.7294 -0.9597 23 7 -2.0608 -6.1237 -0.7473 24 6 1.3959 -4.8429 -0.1179 25 6 2.0940 -3.6521 -0.0021 26 17 3.8027 -3.6608 0.3041 27 1 -0.3633 -0.1007 -1.0227 28 1 -0.3634 -0.8354 0.5985 29 1 -0.3633 0.9361 0.4241 30 1 3.1500 1.1384 -0.5139 31 1 1.6084 2.0284 -0.5139 32 1 4.0311 4.4435 0.8504 33 1 -1.6560 -3.4861 -0.6853 34 1 1.9016 -5.7924 -0.0205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821598137.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:38 Heat of formation + Delta-G solvation = 126.905324 kcal Electronic energy + Delta-G solvation = -23687.767530 eV Core-core repulsion = 19878.264258 eV Total energy + Delta-G solvation = -3809.503272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.069 amu Computer time = -1.80 seconds Orbital eigenvalues (eV) -45.55181 -41.91580 -39.97434 -37.71943 -36.61445 -35.79724 -35.04361 -34.59030 -33.34025 -32.12104 -29.78084 -27.61612 -26.71306 -26.04877 -24.86632 -24.49394 -23.27273 -21.09468 -20.35221 -18.70132 -18.46836 -18.22106 -18.06936 -17.83871 -16.91017 -16.52538 -16.33800 -16.02497 -15.18097 -15.13332 -15.08167 -14.55930 -14.19242 -13.98981 -13.70343 -13.46453 -13.38058 -13.15512 -13.01298 -12.86465 -12.58146 -12.50616 -12.37931 -12.29786 -12.25234 -12.05474 -11.69760 -11.09315 -10.74636 -10.60827 -10.24778 -10.08461 -9.36534 -8.19122 -6.33408 -1.06305 -0.21043 0.06820 0.89949 0.91975 1.35656 1.39004 1.43289 1.50448 1.82597 2.10965 2.39486 2.44360 2.58428 2.92696 3.05019 3.10733 3.44042 3.54083 3.62655 4.01399 4.08422 4.35662 4.50534 4.62168 4.69861 4.88726 4.97841 5.05352 5.24305 5.25901 5.57295 5.59787 5.84894 6.07953 6.35757 6.68020 6.75219 7.02497 7.24061 7.40436 8.87680 Molecular weight = 322.07amu Principal moments of inertia in cm(-1) A = 0.022880 B = 0.003093 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.493863 B = 9051.701406 C = 9696.447718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.587 5.587 3 C 0.261 3.739 4 C -0.541 4.541 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.965 3.035 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.261 1.261 12 C 0.535 3.465 13 O -0.550 6.550 14 C 0.101 3.899 15 N -0.436 5.436 16 C 0.148 3.852 17 C -0.031 4.031 18 C 0.210 3.790 19 N -0.286 5.286 20 N -0.050 5.050 21 N -0.192 5.192 22 H 0.498 0.502 23 N -0.274 5.274 24 C -0.024 4.024 25 C -0.050 4.050 26 Cl -0.023 7.023 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.004 0.996 31 H 0.029 0.971 32 H 0.267 0.733 33 H 0.212 0.788 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.455 -23.230 -3.732 28.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.317 5.317 3 C 0.140 3.860 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.789 3.211 9 H -0.204 1.204 10 H -0.203 1.203 11 H -0.186 1.186 12 C 0.321 3.679 13 O -0.428 6.428 14 C -0.037 4.037 15 N -0.148 5.148 16 C -0.015 4.015 17 C -0.037 4.037 18 C -0.071 4.071 19 N -0.158 5.158 20 N -0.045 5.045 21 N -0.044 5.044 22 H 0.358 0.642 23 N -0.127 5.127 24 C -0.052 4.052 25 C -0.081 4.081 26 Cl 0.006 6.994 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.022 0.978 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.228 0.772 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.069 -22.861 -3.795 28.200 hybrid contribution 0.661 0.084 0.707 0.972 sum -15.408 -22.777 -3.088 27.671 Atomic orbital electron populations 1.22101 0.77199 1.02536 1.02743 1.48083 1.08911 1.05861 1.68836 1.18865 0.91158 0.79681 0.96256 1.21626 1.36866 1.06559 0.92886 0.93039 1.25806 0.94878 0.96351 1.01841 1.70031 1.38885 1.14807 1.32984 0.85507 0.78811 0.77362 0.79376 1.20368 1.20258 1.18567 1.18247 0.86820 0.83779 0.79062 1.90837 1.14451 1.86754 1.50776 1.21131 0.90893 0.92699 0.98988 1.68438 1.04654 1.30516 1.11159 1.23669 1.02065 0.84651 0.91087 1.18353 0.91709 0.89964 1.03657 1.23055 0.87912 0.92909 1.03195 1.76137 1.21683 0.99574 1.18403 1.78922 0.89932 1.21633 1.14035 1.47840 1.13709 1.00703 1.42147 0.64237 1.74910 1.15019 1.02238 1.20509 1.21647 0.92560 0.97886 0.93076 1.21847 0.88682 0.94165 1.03365 1.98441 1.09042 1.98612 1.93259 0.91202 0.88808 0.92351 0.97779 0.95323 0.92364 0.77166 0.80330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.27 9.10 127.77 1.16 4.43 16 2 N -0.59 -26.49 2.86 -854.43 -2.44 -28.93 16 3 C 0.26 14.37 5.09 85.63 0.44 14.80 16 4 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.60 5.46 84.66 0.46 1.06 16 7 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 8 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 9 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 12 C 0.54 23.75 7.62 86.82 0.66 24.41 16 13 O -0.55 -28.40 13.59 -3.85 -0.05 -28.45 16 14 C 0.10 3.37 6.57 41.89 0.28 3.64 16 15 N -0.44 -11.48 6.13 -184.04 -1.13 -12.61 16 16 C 0.15 2.72 10.86 85.14 0.92 3.65 16 17 C -0.03 -0.58 5.90 -19.88 -0.12 -0.69 16 18 C 0.21 3.46 7.95 137.32 1.09 4.56 16 19 N -0.29 -5.19 12.30 -52.21 -0.64 -5.83 16 20 N -0.05 -0.69 13.47 37.02 0.50 -0.19 16 21 N -0.19 -1.40 7.90 37.02 0.29 -1.11 16 22 H 0.50 -1.41 8.96 -347.54 -3.12 -4.52 16 23 N -0.27 -3.28 12.10 -52.16 -0.63 -3.91 16 24 C -0.02 -0.51 9.63 22.67 0.22 -0.29 16 25 C -0.05 -1.47 6.36 22.65 0.14 -1.33 16 26 Cl -0.02 -0.76 26.02 -2.72 -0.07 -0.83 16 27 H 0.07 2.06 7.98 -2.39 -0.02 2.04 16 28 H 0.09 2.83 5.81 -2.39 -0.01 2.82 16 29 H 0.06 2.02 8.03 -2.39 -0.02 2.00 16 30 H 0.00 0.26 7.51 -2.38 -0.02 0.24 16 31 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 32 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 33 H 0.21 2.36 7.89 -2.91 -0.02 2.34 16 34 H 0.18 3.19 7.96 -2.91 -0.02 3.17 16 Total: -1.00 -77.51 320.78 1.71 -75.80 By element: Atomic # 1 Polarization: -6.13 SS G_CDS: -1.92 Total: -8.05 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 5.50 Total: 22.76 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -3.77 Total: -108.77 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.05 Total: -28.45 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.07 Total: -0.83 kcal Total: -77.51 1.71 -75.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821598137.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.702 kcal (2) G-P(sol) polarization free energy of solvation -77.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.80 seconds