Wall clock time and date at job start Fri Apr 10 2020 18:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47295 * 353.35764 * 3 2 1 5 5 C 1.36890 * 119.99748 * 96.55040 * 4 3 2 6 6 H 1.08002 * 120.00071 * 159.34571 * 5 4 3 7 7 C 1.39009 * 120.00409 * 339.35390 * 5 4 3 8 8 N 1.31397 * 119.99309 * 343.06378 * 7 5 4 9 9 Si 1.86798 * 120.00361 * 163.06890 * 7 5 4 10 10 H 1.48503 * 109.46757 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47168 * 119.99639 * 9 7 5 12 12 H 1.48501 * 109.47048 * 239.99756 * 9 7 5 13 13 C 1.34776 * 119.99964 * 276.55031 * 4 3 2 14 14 O 1.21731 * 119.99631 * 186.27822 * 13 4 3 15 15 C 1.46551 * 119.99947 * 6.27502 * 13 4 3 16 16 C 1.36784 * 126.17981 * 182.03470 * 15 13 4 17 17 N 1.30940 * 113.92221 * 180.02562 * 16 15 13 18 18 C 1.29372 * 117.46940 * 359.97438 * 17 16 15 19 19 C 1.50704 * 124.70289 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.50898 * 300.41546 * 19 18 17 21 21 O 1.43366 * 109.62634 * 60.73245 * 19 18 17 22 22 C 1.44197 * 107.29006 * 120.54520 * 21 19 18 23 23 C 1.54914 * 103.22711 * 21.34999 * 22 21 19 24 24 O 1.43745 * 109.63210 * 180.09283 * 19 18 17 25 25 S 1.70921 * 110.59569 * 0.26816 * 18 17 16 26 26 H 4.40642 * 5.51405 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.46450 * 233.35228 * 3 2 1 28 28 H 1.09000 * 109.46511 * 113.36316 * 3 2 1 29 29 H 0.97002 * 119.99349 * 180.02562 * 8 7 5 30 30 H 1.07998 * 123.03526 * 0.04515 * 16 15 13 31 31 H 1.08995 * 109.46901 * 179.61658 * 20 19 18 32 32 H 1.08995 * 109.47200 * 299.61616 * 20 19 18 33 33 H 1.09000 * 109.46909 * 59.61385 * 20 19 18 34 34 H 1.09001 * 110.69545 * 139.82683 * 22 21 19 35 35 H 1.08997 * 110.69532 * 262.86676 * 22 21 19 36 36 H 1.09001 * 110.97959 * 82.63574 * 23 22 21 37 37 H 1.09000 * 110.97921 * 206.41472 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3710 0.1598 5 6 3.4910 -2.1032 -0.9407 6 1 4.1463 -2.9550 -0.8337 7 6 3.0092 -1.7504 -2.1960 8 7 1.9738 -0.9483 -2.3005 9 14 3.8337 -2.4167 -3.7341 10 1 4.9697 -3.2915 -3.3473 11 1 2.8500 -3.2015 -4.5225 12 1 4.3371 -1.2863 -4.5551 13 6 3.2343 -1.9120 1.3902 14 8 3.7465 -3.0069 1.5341 15 6 2.7259 -1.1820 2.5548 16 6 2.7957 -1.5915 3.8580 17 7 2.2632 -0.7500 4.7083 18 6 1.7498 0.3369 4.2300 19 6 1.0966 1.4137 5.0576 20 6 -0.0892 0.8219 5.8222 21 8 2.0479 1.9516 5.9855 22 6 2.1675 3.3615 5.7077 23 6 0.8516 3.6880 4.9583 24 8 0.6382 2.4715 4.1989 25 16 1.9079 0.3786 2.5286 26 1 -1.0498 -0.0004 -0.0001 27 1 3.0090 0.6143 0.8246 28 1 3.0091 0.4084 -0.9434 29 1 1.6373 -0.7024 -3.1765 30 1 3.2493 -2.5244 4.1585 31 1 -0.5569 1.5996 6.4257 32 1 -0.8164 0.4248 5.1141 33 1 0.2612 0.0195 6.4714 34 1 2.2350 3.9323 6.6339 35 1 3.0313 3.5570 5.0724 36 1 0.0346 3.8570 5.6598 37 1 0.9808 4.5458 4.2983 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861520953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:05 Heat of formation + Delta-G solvation = 11.115599 kcal Electronic energy + Delta-G solvation = -25140.404892 eV Core-core repulsion = 21399.171899 eV Total energy + Delta-G solvation = -3741.232992 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.74208 -39.21645 -38.33095 -35.32885 -35.18442 -32.68807 -32.27214 -31.43373 -29.37111 -28.59603 -26.77310 -26.05795 -24.57843 -23.48439 -22.28885 -20.93122 -18.72434 -18.19428 -18.00862 -17.30881 -16.80399 -16.60159 -15.78743 -15.58996 -15.03199 -14.83037 -14.48254 -14.34934 -14.02627 -13.84628 -13.58665 -13.20689 -13.04017 -12.97212 -12.55706 -12.37081 -12.27927 -12.12382 -11.77198 -11.63535 -11.17874 -10.88697 -10.68719 -10.47210 -10.41238 -10.19733 -9.77093 -9.54047 -9.27597 -8.99744 -8.73728 -8.54487 -8.25954 -7.98077 -6.56331 -4.05561 0.77571 1.76370 2.23719 2.94973 3.09851 3.15126 3.21262 3.21832 3.59069 3.66525 3.89545 4.02680 4.13621 4.32347 4.46860 4.67529 4.76097 4.85192 4.88555 5.02639 5.16069 5.21893 5.30322 5.39772 5.57090 5.65067 5.69072 5.70304 5.94128 6.03041 6.06497 6.50300 6.63524 6.84902 6.91235 7.33359 7.80438 8.15833 8.20806 8.65535 8.89154 9.06357 9.65700 10.42685 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.023092 B = 0.004131 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.272957 B = 6777.002968 C = 7402.650542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.124 4.124 3 C 0.221 3.779 4 N -0.421 5.421 5 C -0.302 4.302 6 H 0.112 0.888 7 C 0.031 3.969 8 N -0.851 5.851 9 Si 0.931 3.069 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.510 3.490 14 O -0.571 6.571 15 C -0.251 4.251 16 C 0.069 3.931 17 N -0.451 5.451 18 C -0.053 4.053 19 C 0.345 3.655 20 C -0.156 4.156 21 O -0.359 6.359 22 C 0.015 3.985 23 C 0.017 3.983 24 O -0.365 6.365 25 S 0.253 5.747 26 H 0.203 0.797 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.274 0.726 30 H 0.182 0.818 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 12.586 9.899 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.128 4.128 3 C 0.096 3.904 4 N -0.137 5.137 5 C -0.430 4.430 6 H 0.130 0.870 7 C -0.175 4.175 8 N -0.488 5.488 9 Si 0.757 3.243 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.299 3.701 14 O -0.456 6.456 15 C -0.377 4.377 16 C -0.090 4.090 17 N -0.167 5.167 18 C -0.326 4.326 19 C 0.264 3.736 20 C -0.215 4.215 21 O -0.279 6.279 22 C -0.062 4.062 23 C -0.059 4.059 24 O -0.285 6.285 25 S 0.514 5.486 26 H 0.220 0.780 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.085 0.915 30 H 0.199 0.801 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.273 12.696 9.588 16.474 hybrid contribution 0.288 -0.881 -0.554 1.080 sum -3.985 11.815 9.034 15.397 Atomic orbital electron populations 1.24270 0.95289 1.00662 1.04542 1.22601 0.94059 0.99646 0.96498 1.18528 0.85258 0.84652 1.01956 1.43655 1.53969 1.10765 1.05316 1.19873 1.27114 1.12647 0.83413 0.87021 1.25482 0.94998 0.97235 0.99806 1.70030 1.19438 1.33888 1.25437 0.85781 0.79460 0.78834 0.80268 1.18861 1.20508 1.20300 1.16591 0.85990 0.85860 0.81643 1.90673 1.49275 1.21057 1.84612 1.26741 1.10039 1.00673 1.00232 1.22148 1.00367 1.00057 0.86389 1.65865 1.10416 1.01724 1.38665 1.27336 1.06674 0.98618 0.99942 1.21084 0.86532 0.84840 0.81104 1.22250 0.96193 1.02166 1.00879 1.89042 1.62723 1.21216 1.54967 1.24266 0.98185 0.82363 1.01394 1.24472 0.96751 0.88839 0.95849 1.89300 1.83906 1.15342 1.39981 1.84917 1.48440 1.15041 1.00214 0.77975 0.91713 0.85751 0.91537 0.80144 0.91407 0.90416 0.89652 0.87977 0.90428 0.90236 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.53 19.04 29.55 0.56 -3.97 16 2 C -0.12 -2.68 8.44 -37.12 -0.31 -2.99 16 3 C 0.22 4.85 4.73 -6.83 -0.03 4.82 16 4 N -0.42 -10.63 2.59 -119.46 -0.31 -10.94 16 5 C -0.30 -8.02 9.32 -15.01 -0.14 -8.16 16 6 H 0.11 3.10 7.36 -52.49 -0.39 2.71 16 7 C 0.03 0.76 4.96 -17.45 -0.09 0.68 16 8 N -0.85 -21.03 9.35 55.50 0.52 -20.51 16 9 Si 0.93 19.38 29.59 -169.99 -5.03 14.35 16 10 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 13 C 0.51 13.02 7.52 -12.91 -0.10 12.92 16 14 O -0.57 -16.11 16.54 5.16 0.09 -16.03 16 15 C -0.25 -5.51 6.24 -36.76 -0.23 -5.74 16 16 C 0.07 1.41 11.17 -18.46 -0.21 1.21 16 17 N -0.45 -8.80 10.49 -11.25 -0.12 -8.91 16 18 C -0.05 -0.95 6.24 -13.31 -0.08 -1.04 16 19 C 0.34 5.11 1.43 -27.88 -0.04 5.07 16 20 C -0.16 -1.99 9.17 37.16 0.34 -1.65 16 21 O -0.36 -5.16 10.85 -59.04 -0.64 -5.80 16 22 C 0.01 0.14 8.07 38.17 0.31 0.45 16 23 C 0.02 0.15 7.94 38.17 0.30 0.45 16 24 O -0.37 -4.89 10.32 -59.04 -0.61 -5.50 16 25 S 0.25 4.72 15.22 -107.50 -1.64 3.08 16 26 H 0.20 3.25 7.80 -54.10 -0.42 2.83 16 27 H 0.07 1.29 5.01 -26.52 -0.13 1.15 16 28 H 0.12 2.79 6.48 -51.93 -0.34 2.45 16 29 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.18 3.51 8.06 -52.49 -0.42 3.08 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -32.00 330.52 -6.27 -38.27 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.79 Total: 4.97 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 0.29 Total: 2.04 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.09 Total: -40.37 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -1.16 Total: -27.33 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.64 Total: 3.08 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.00 -6.27 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861520953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.386 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds