Wall clock time and date at job start Fri Apr 10 2020 18:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47295 * 353.35764 * 3 2 1 5 5 C 1.36890 * 119.99748 * 96.55040 * 4 3 2 6 6 H 1.08002 * 120.00071 * 159.34571 * 5 4 3 7 7 C 1.39009 * 120.00409 * 339.35390 * 5 4 3 8 8 N 1.31397 * 119.99309 * 343.06378 * 7 5 4 9 9 Si 1.86798 * 120.00361 * 163.06890 * 7 5 4 10 10 H 1.48503 * 109.46757 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47168 * 119.99639 * 9 7 5 12 12 H 1.48501 * 109.47048 * 239.99756 * 9 7 5 13 13 C 1.34776 * 119.99964 * 276.55031 * 4 3 2 14 14 O 1.21731 * 119.99631 * 186.27822 * 13 4 3 15 15 C 1.46551 * 119.99947 * 6.27502 * 13 4 3 16 16 C 1.36784 * 126.17981 * 182.03470 * 15 13 4 17 17 N 1.30940 * 113.92221 * 180.02562 * 16 15 13 18 18 C 1.29372 * 117.46940 * 359.97438 * 17 16 15 19 19 C 1.50704 * 124.70289 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.50898 * 300.41546 * 19 18 17 21 21 O 1.43366 * 109.62634 * 60.73245 * 19 18 17 22 22 C 1.44197 * 107.29006 * 120.54520 * 21 19 18 23 23 C 1.54914 * 103.22711 * 21.34999 * 22 21 19 24 24 O 1.43745 * 109.63210 * 180.09283 * 19 18 17 25 25 S 1.70921 * 110.59569 * 0.26816 * 18 17 16 26 26 H 4.40642 * 5.51405 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.46450 * 233.35228 * 3 2 1 28 28 H 1.09000 * 109.46511 * 113.36316 * 3 2 1 29 29 H 0.97002 * 119.99349 * 180.02562 * 8 7 5 30 30 H 1.07998 * 123.03526 * 0.04515 * 16 15 13 31 31 H 1.08995 * 109.46901 * 179.61658 * 20 19 18 32 32 H 1.08995 * 109.47200 * 299.61616 * 20 19 18 33 33 H 1.09000 * 109.46909 * 59.61385 * 20 19 18 34 34 H 1.09001 * 110.69545 * 139.82683 * 22 21 19 35 35 H 1.08997 * 110.69532 * 262.86676 * 22 21 19 36 36 H 1.09001 * 110.97959 * 82.63574 * 23 22 21 37 37 H 1.09000 * 110.97921 * 206.41472 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3710 0.1598 5 6 3.4910 -2.1032 -0.9407 6 1 4.1463 -2.9550 -0.8337 7 6 3.0092 -1.7504 -2.1960 8 7 1.9738 -0.9483 -2.3005 9 14 3.8337 -2.4167 -3.7341 10 1 4.9697 -3.2915 -3.3473 11 1 2.8500 -3.2015 -4.5225 12 1 4.3371 -1.2863 -4.5551 13 6 3.2343 -1.9120 1.3902 14 8 3.7465 -3.0069 1.5341 15 6 2.7259 -1.1820 2.5548 16 6 2.7957 -1.5915 3.8580 17 7 2.2632 -0.7500 4.7083 18 6 1.7498 0.3369 4.2300 19 6 1.0966 1.4137 5.0576 20 6 -0.0892 0.8219 5.8222 21 8 2.0479 1.9516 5.9855 22 6 2.1675 3.3615 5.7077 23 6 0.8516 3.6880 4.9583 24 8 0.6382 2.4715 4.1989 25 16 1.9079 0.3786 2.5286 26 1 -1.0498 -0.0004 -0.0001 27 1 3.0090 0.6143 0.8246 28 1 3.0091 0.4084 -0.9434 29 1 1.6373 -0.7024 -3.1765 30 1 3.2493 -2.5244 4.1585 31 1 -0.5569 1.5996 6.4257 32 1 -0.8164 0.4248 5.1141 33 1 0.2612 0.0195 6.4714 34 1 2.2350 3.9323 6.6339 35 1 3.0313 3.5570 5.0724 36 1 0.0346 3.8570 5.6598 37 1 0.9808 4.5458 4.2983 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861520953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:03 Heat of formation + Delta-G solvation = -10.858083 kcal Electronic energy + Delta-G solvation = -25141.357742 eV Core-core repulsion = 21399.171899 eV Total energy + Delta-G solvation = -3742.185842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75998 -40.93046 -39.99987 -37.24088 -36.16313 -34.34727 -33.52107 -33.21389 -30.86375 -29.47662 -28.52397 -27.63030 -26.28194 -24.32650 -23.59170 -22.55665 -20.10564 -19.86749 -19.70691 -18.55710 -18.36235 -17.78780 -17.31669 -16.96942 -16.39925 -16.29580 -16.13863 -15.78136 -15.45975 -15.16430 -14.89557 -14.76772 -14.42982 -14.12384 -14.02569 -13.90094 -13.58118 -13.30870 -13.15200 -12.85951 -12.68256 -12.42452 -12.39961 -12.12738 -11.47069 -11.35452 -11.24347 -11.19203 -11.02940 -10.74886 -10.37810 -10.21989 -10.04705 -9.64465 -8.43839 -6.05589 -0.79518 0.21561 0.68728 1.30332 1.43144 1.49868 1.56324 1.90525 2.18625 2.20287 2.28797 2.36065 2.63763 2.97019 2.98923 3.33187 3.60649 3.66030 3.82266 3.93660 3.97399 4.11763 4.17786 4.30425 4.37393 4.49460 4.68554 4.68976 4.74289 4.75032 4.91824 5.03571 5.12614 5.29899 5.36317 5.88398 5.95369 6.26962 6.61155 6.94978 7.03757 7.15894 7.73413 8.54123 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.023092 B = 0.004131 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.272957 B = 6777.002968 C = 7402.650542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.225 3.775 4 N -0.430 5.430 5 C -0.348 4.348 6 H 0.084 0.916 7 C 0.008 3.992 8 N -0.861 5.861 9 Si 0.995 3.005 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.260 1.260 13 C 0.500 3.500 14 O -0.616 6.616 15 C -0.293 4.293 16 C 0.081 3.919 17 N -0.466 5.466 18 C -0.037 4.037 19 C 0.341 3.659 20 C -0.153 4.153 21 O -0.381 6.381 22 C 0.005 3.995 23 C 0.015 3.985 24 O -0.383 6.383 25 S 0.292 5.708 26 H 0.239 0.761 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.280 0.720 30 H 0.183 0.817 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.911 15.271 10.465 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.168 4.168 3 C 0.101 3.899 4 N -0.145 5.145 5 C -0.476 4.476 6 H 0.102 0.898 7 C -0.197 4.197 8 N -0.496 5.496 9 Si 0.817 3.183 10 H -0.198 1.198 11 H -0.201 1.201 12 H -0.185 1.185 13 C 0.290 3.710 14 O -0.505 6.505 15 C -0.418 4.418 16 C -0.079 4.079 17 N -0.181 5.181 18 C -0.310 4.310 19 C 0.261 3.739 20 C -0.212 4.212 21 O -0.302 6.302 22 C -0.071 4.071 23 C -0.060 4.060 24 O -0.303 6.303 25 S 0.554 5.446 26 H 0.255 0.745 27 H 0.099 0.901 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.200 0.800 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.153 0.847 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.082 15.444 10.136 19.449 hybrid contribution 0.757 -1.535 -0.562 1.801 sum -5.325 13.909 9.574 17.705 Atomic orbital electron populations 1.25146 0.96174 0.98646 1.02627 1.22707 0.94391 1.01452 0.98277 1.18512 0.86065 0.83179 1.02146 1.43779 1.53959 1.11831 1.04942 1.19766 1.29109 1.13717 0.85000 0.89828 1.26158 0.95025 0.97087 1.01478 1.70097 1.19419 1.33709 1.26372 0.84863 0.78155 0.78516 0.76717 1.19810 1.20115 1.18491 1.17053 0.85521 0.85748 0.82676 1.90605 1.51221 1.23103 1.85597 1.26408 1.12846 1.03219 0.99353 1.22313 0.99171 1.00167 0.86216 1.65985 1.11578 1.02380 1.38195 1.28277 1.03846 0.98641 1.00279 1.21227 0.86954 0.84719 0.81033 1.22245 0.95362 1.02795 1.00797 1.89025 1.62769 1.23876 1.54523 1.24613 0.98738 0.80374 1.03340 1.24850 0.96978 0.87723 0.96489 1.89275 1.83729 1.16549 1.40773 1.84636 1.47177 1.12349 1.00441 0.74458 0.90062 0.86749 0.90918 0.79980 0.88265 0.90519 0.90738 0.84674 0.90649 0.87679 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.82 19.04 74.32 1.42 -6.41 16 2 C -0.16 -7.02 8.44 31.13 0.26 -6.76 16 3 C 0.22 10.07 4.73 84.58 0.40 10.47 16 4 N -0.43 -22.67 2.59 -650.08 -1.69 -24.36 16 5 C -0.35 -19.38 9.32 84.09 0.78 -18.60 16 6 H 0.08 4.99 7.36 -2.91 -0.02 4.97 16 7 C 0.01 0.40 4.96 84.94 0.42 0.82 16 8 N -0.86 -42.45 9.35 21.68 0.20 -42.24 16 9 Si 0.99 40.16 29.59 68.60 2.03 42.19 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 11 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 12 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 13 C 0.50 26.84 7.52 86.41 0.65 27.49 16 14 O -0.62 -37.09 16.54 -4.45 -0.07 -37.17 16 15 C -0.29 -13.21 6.24 24.10 0.15 -13.06 16 16 C 0.08 3.39 11.17 84.48 0.94 4.33 16 17 N -0.47 -17.98 10.49 -189.51 -1.99 -19.97 16 18 C -0.04 -1.29 6.24 88.47 0.55 -0.74 16 19 C 0.34 9.27 1.43 29.85 0.04 9.32 16 20 C -0.15 -3.50 9.17 71.98 0.66 -2.84 16 21 O -0.38 -9.97 10.85 -126.22 -1.37 -11.34 16 22 C 0.00 0.08 8.07 72.64 0.59 0.66 16 23 C 0.01 0.19 7.94 72.64 0.58 0.77 16 24 O -0.38 -9.00 10.32 -126.22 -1.30 -10.30 16 25 S 0.29 10.69 15.22 -56.49 -0.86 9.83 16 26 H 0.24 6.82 7.80 -4.43 -0.03 6.79 16 27 H 0.08 3.27 5.01 -18.54 -0.09 3.17 16 28 H 0.11 5.25 6.48 -2.39 -0.02 5.24 16 29 H 0.28 12.84 8.31 -92.71 -0.77 12.07 16 30 H 0.18 7.38 8.06 -2.91 -0.02 7.36 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -72.16 330.52 3.42 -68.74 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.03 Total: 19.17 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 7.44 Total: 5.46 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -3.47 Total: -86.57 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -2.75 Total: -58.81 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 16 Polarization: 10.69 SS G_CDS: -0.86 Total: 9.83 kcal Total: -72.16 3.42 -68.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861520953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.878 kcal (2) G-P(sol) polarization free energy of solvation -72.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds