Wall clock time and date at job start Fri Apr 10 2020 18:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35620 * 124.92462 * 2 1 4 4 C 1.35391 * 107.15526 * 180.02562 * 3 2 1 5 5 I 2.09502 * 127.23589 * 180.02562 * 4 3 2 6 6 C 1.41591 * 105.53148 * 359.97438 * 4 3 2 7 7 C 1.47505 * 126.47186 * 180.02562 * 6 4 3 8 8 O 1.21533 * 120.00124 * 0.02562 * 7 6 4 9 9 O 1.34754 * 119.99836 * 179.72477 * 7 6 4 10 10 C 1.34869 * 116.99805 * 180.27371 * 9 7 6 11 11 H 1.08003 * 120.00073 * 0.02562 * 10 9 7 12 12 C 1.38800 * 119.99898 * 179.97438 * 10 9 7 13 13 N 1.31421 * 120.00093 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46904 * 90.00751 * 14 12 10 16 16 H 1.48499 * 109.46984 * 210.00188 * 14 12 10 17 17 H 1.48495 * 109.47185 * 330.00419 * 14 12 10 18 18 N 1.28474 * 124.92946 * 180.31461 * 2 1 3 19 19 H 1.08998 * 109.47028 * 90.00169 * 1 2 3 20 20 H 1.09002 * 109.46549 * 210.00339 * 1 2 3 21 21 H 1.09001 * 109.46898 * 329.99812 * 1 2 3 22 22 H 1.07993 * 126.42057 * 0.02562 * 3 2 1 23 23 H 0.96993 * 120.00408 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2415 1.1120 0.0000 4 6 3.5308 0.6988 -0.0006 5 53 5.2470 1.9003 -0.0002 6 6 3.4755 -0.7161 -0.0003 7 6 4.6265 -1.6385 -0.0002 8 8 5.7589 -1.1973 0.0001 9 8 4.4224 -2.9705 0.0057 10 6 5.5176 -3.7577 0.0112 11 1 6.5020 -3.3134 0.0111 12 6 5.3795 -5.1388 0.0179 13 7 4.1816 -5.6794 0.0184 14 14 6.8963 -6.2290 0.0262 15 1 7.2955 -6.5110 1.4285 16 1 6.5918 -7.5060 -0.6680 17 1 8.0072 -5.5370 -0.6752 18 7 2.2007 -1.0533 -0.0058 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3632 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 1.8960 2.1351 0.0004 23 1 4.0851 -6.6445 0.0235 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869687604.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:19 Heat of formation + Delta-G solvation = 0.696714 kcal Electronic energy + Delta-G solvation = -13348.205300 eV Core-core repulsion = 10636.790448 eV Total energy + Delta-G solvation = -2711.414852 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 321.960 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.72647 -40.76535 -37.26540 -34.71772 -34.32227 -32.85058 -29.64268 -28.71140 -27.18035 -24.22025 -22.11455 -21.37292 -19.83486 -18.85198 -17.69576 -17.42639 -16.57922 -16.27319 -16.18548 -14.75566 -14.40124 -14.18575 -13.78715 -13.60234 -13.18996 -13.10310 -12.37515 -12.19942 -12.06253 -11.96590 -11.56202 -11.47568 -10.70544 -10.42733 -10.36753 -9.89265 -8.54665 -6.32663 0.17020 0.37604 0.83848 1.33488 1.42498 1.51541 1.61122 2.12781 2.19465 2.70900 3.01686 3.50293 3.74516 4.29711 4.38426 4.43139 4.60446 4.70459 4.97804 5.18467 5.74877 5.80403 6.52272 6.77671 6.89226 7.75695 8.66436 Molecular weight = 321.96amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.005971 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.102331 B = 4688.308411 C = 6076.253504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.275 5.275 3 C 0.052 3.948 4 C -0.199 4.199 5 I 0.030 6.970 6 C 0.014 3.986 7 C 0.465 3.535 8 O -0.539 6.539 9 O -0.231 6.231 10 C -0.418 4.418 11 H 0.089 0.911 12 C -0.006 4.006 13 N -0.901 5.901 14 Si 1.023 2.977 15 H -0.259 1.259 16 H -0.260 1.260 17 H -0.260 1.260 18 N -0.267 5.267 19 H 0.107 0.893 20 H 0.095 0.905 21 H 0.144 0.856 22 H 0.243 0.757 23 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 18.833 0.050 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.064 5.064 3 C -0.095 4.095 4 C -0.349 4.349 5 I 0.174 6.826 6 C -0.145 4.145 7 C 0.311 3.689 8 O -0.434 6.434 9 O -0.138 6.138 10 C -0.493 4.493 11 H 0.107 0.893 12 C -0.206 4.206 13 N -0.538 5.538 14 Si 0.841 3.159 15 H -0.183 1.183 16 H -0.184 1.184 17 H -0.184 1.184 18 N -0.105 5.105 19 H 0.125 0.875 20 H 0.114 0.886 21 H 0.162 0.838 22 H 0.260 0.740 23 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.661 18.576 0.044 19.734 hybrid contribution 0.053 -0.852 -0.012 0.853 sum -6.608 17.724 0.032 18.916 Atomic orbital electron populations 1.22795 0.69203 1.07765 1.06658 1.46372 1.09783 1.02032 1.48241 1.23488 0.87530 0.95634 1.02820 1.24941 0.98708 0.93310 1.17895 1.96397 1.30951 1.56321 1.98895 1.20758 0.89973 0.92257 1.11465 1.20094 0.87433 0.82655 0.78715 1.90659 1.23699 1.77940 1.51073 1.84008 1.38029 1.15760 1.76015 1.21600 0.85456 0.87835 1.54451 0.89325 1.26675 1.02532 0.96876 0.94552 1.70115 1.24475 1.12865 1.46350 0.84565 0.75186 0.76566 0.79621 1.18326 1.18364 1.18409 1.73869 1.02799 1.15138 1.18648 0.87502 0.88647 0.83784 0.74038 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 11.32 127.77 1.45 2.41 14 2 N -0.28 -7.45 3.72 -368.93 -1.37 -8.82 14 3 C 0.05 1.26 11.47 83.45 0.96 2.21 14 4 C -0.20 -6.96 6.65 22.44 0.15 -6.81 14 5 I 0.03 0.95 38.98 -18.82 -0.73 0.21 14 6 C 0.01 0.66 7.16 42.41 0.30 0.97 14 7 C 0.47 26.35 7.90 70.27 0.56 26.91 14 8 O -0.54 -30.74 14.51 19.73 0.29 -30.46 14 9 O -0.23 -14.94 9.75 10.96 0.11 -14.83 14 10 C -0.42 -26.65 9.65 67.95 0.66 -25.99 14 11 H 0.09 5.63 6.86 -2.91 -0.02 5.61 14 12 C -0.01 -0.36 5.50 84.89 0.47 0.11 14 13 N -0.90 -55.81 13.67 21.63 0.30 -55.51 14 14 Si 1.02 44.96 29.55 68.60 2.03 46.99 14 15 H -0.26 -10.72 7.11 99.48 0.71 -10.01 14 16 H -0.26 -10.53 7.11 99.48 0.71 -9.82 14 17 H -0.26 -11.10 7.11 99.48 0.71 -10.40 14 18 N -0.27 -11.08 11.99 -48.24 -0.58 -11.66 14 19 H 0.11 1.03 8.14 -2.39 -0.02 1.01 14 20 H 0.09 1.40 8.14 -2.39 -0.02 1.39 14 21 H 0.14 0.52 8.13 -2.39 -0.02 0.50 14 22 H 0.24 2.82 8.06 -2.91 -0.02 2.80 14 23 H 0.28 15.57 8.31 -92.71 -0.77 14.80 14 Total: -1.00 -84.23 250.78 5.82 -78.41 By element: Atomic # 1 Polarization: -5.38 SS G_CDS: 1.25 Total: -4.13 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 4.53 Total: -0.20 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -1.65 Total: -76.00 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: 0.39 Total: -45.29 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 53 Polarization: 0.95 SS G_CDS: -0.73 Total: 0.21 kcal Total: -84.23 5.82 -78.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869687604.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.110 kcal (2) G-P(sol) polarization free energy of solvation -84.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds