Wall clock time and date at job start Fri Apr 10 2020 18:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47248 * 299.99832 * 3 2 1 6 6 H 1.48501 * 109.47068 * 59.99849 * 3 2 1 7 7 C 1.38796 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00151 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 S 1.81396 * 109.47360 * 179.97438 * 15 14 13 17 17 O 1.42094 * 110.54259 * 291.62586 * 16 15 14 18 18 O 1.42106 * 110.54167 * 68.37612 * 16 15 14 19 19 N 1.65606 * 104.45103 * 179.97438 * 16 15 14 20 20 C 1.47016 * 125.64780 * 269.69439 * 19 16 15 21 21 C 1.54311 * 107.27721 * 180.96885 * 20 19 16 22 22 C 1.55156 * 102.86331 * 22.52360 * 21 20 19 23 23 C 1.47419 * 125.64796 * 90.00055 * 19 16 15 24 24 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46925 * 60.00021 * 10 9 7 26 26 H 1.09002 * 109.47115 * 300.00178 * 10 9 7 27 27 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 28 28 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 29 29 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 30 30 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 31 31 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 32 32 H 1.09005 * 109.88595 * 300.51015 * 20 19 16 33 33 H 1.08993 * 109.88616 * 61.67467 * 20 19 16 34 34 H 1.09000 * 110.92734 * 264.11198 * 21 20 19 35 35 H 1.08996 * 110.59610 * 140.78371 * 21 20 19 36 36 H 1.09003 * 111.00798 * 206.23126 * 22 21 20 37 37 H 1.08998 * 111.00714 * 82.37798 * 22 21 20 38 38 H 1.09002 * 110.36704 * 274.67779 * 23 19 16 39 39 H 1.09006 * 110.36471 * 36.88438 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3028 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.3305 -7.7151 0.0034 15 6 3.5025 -8.6985 0.0046 16 16 2.8664 -10.3973 0.0056 17 8 2.2318 -10.6914 1.2425 18 8 2.2329 -10.6933 -1.2315 19 7 4.2234 -11.3467 0.0062 20 6 4.9218 -11.8438 -1.1882 21 6 6.1088 -12.7012 -0.7013 22 6 5.6750 -13.1100 0.7311 23 6 4.9273 -11.8385 1.2044 24 1 -0.4850 0.8400 -0.0004 25 1 3.1238 -3.7310 0.8925 26 1 3.1252 -3.7318 -0.8874 27 1 3.8010 -6.1835 0.0043 28 1 1.7209 -7.8747 0.8928 29 1 1.7228 -7.8757 -0.8871 30 1 4.1118 -8.5388 -0.8850 31 1 4.1105 -8.5381 0.8949 32 1 4.2442 -12.4518 -1.7877 33 1 5.2904 -11.0047 -1.7782 34 1 7.0271 -12.1147 -0.6735 35 1 6.2308 -13.5810 -1.3331 36 1 6.5425 -13.3100 1.3600 37 1 5.0059 -13.9701 0.7063 38 1 5.6368 -11.0917 1.5608 39 1 4.2126 -12.0866 1.9892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888869550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:22 Heat of formation + Delta-G solvation = -107.422263 kcal Electronic energy + Delta-G solvation = -22101.273738 eV Core-core repulsion = 18490.344510 eV Total energy + Delta-G solvation = -3610.929228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.085 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -39.28915 -38.83976 -37.50177 -36.32635 -35.37870 -32.45258 -31.55537 -31.45787 -29.51897 -28.82485 -25.53039 -23.89214 -22.88646 -21.76308 -20.67702 -19.31569 -18.22843 -17.94884 -17.15170 -16.69257 -16.33502 -16.15893 -15.76773 -15.46842 -14.82667 -14.49875 -14.34324 -14.14952 -13.98284 -13.81467 -13.32049 -13.15705 -12.69593 -12.58185 -12.55012 -12.48884 -12.39804 -12.09009 -11.85011 -11.74142 -11.69301 -11.43247 -11.25731 -11.08889 -11.04690 -10.77934 -9.84028 -9.61188 -9.42541 -9.12248 -9.06075 -8.26495 -6.53095 -6.23943 -3.95012 -0.27139 2.17538 2.94258 2.99022 3.20003 3.25017 3.29549 3.41886 3.59066 3.69130 3.90764 4.06843 4.10107 4.17748 4.36871 4.44986 4.73084 4.89185 4.92025 4.98301 5.06154 5.11241 5.20791 5.27273 5.29835 5.33507 5.38503 5.42244 5.55022 5.65514 5.68537 5.82868 5.86544 6.07803 6.38963 7.55081 7.57870 8.32963 8.48803 9.21329 10.83524 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.034888 B = 0.002070 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.387003 B =13520.751490 C =13922.143104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.512 6.512 13 N -0.734 5.734 14 C 0.133 3.867 15 C -0.649 4.649 16 S 2.635 3.365 17 O -0.943 6.943 18 O -0.943 6.943 19 N -1.014 6.014 20 C 0.117 3.883 21 C -0.130 4.130 22 C -0.130 4.130 23 C 0.111 3.889 24 H 0.268 0.732 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.401 0.599 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.023 -26.543 0.120 31.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.386 6.386 13 N -0.390 5.390 14 C 0.007 3.993 15 C -0.777 4.777 16 S 2.727 3.273 17 O -0.933 6.933 18 O -0.933 6.933 19 N -0.853 5.853 20 C -0.008 4.008 21 C -0.169 4.169 22 C -0.169 4.169 23 C -0.014 4.014 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.236 0.764 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.876 -27.012 0.113 30.368 hybrid contribution 3.130 1.900 -0.024 3.662 sum 17.006 -25.112 0.089 30.329 Atomic orbital electron populations 1.70027 1.05951 1.27404 1.46807 1.25007 0.95050 0.99082 0.94525 0.86098 0.79525 0.81825 0.77919 1.19645 1.20550 1.20551 1.22898 0.94927 0.91580 1.58982 0.90850 1.85451 1.04734 0.96346 1.96722 1.23530 1.06743 0.95000 1.05072 1.20415 0.86536 0.86304 0.75084 1.90726 1.15291 1.85508 1.47030 1.45916 1.10146 1.04447 1.78498 1.20830 0.92982 0.81470 1.03997 1.31003 1.10606 1.23797 1.12283 1.04415 0.72632 0.75821 0.74418 1.93618 1.71763 1.82638 1.45328 1.93622 1.71869 1.82552 1.45276 1.58720 1.47799 1.65416 1.13404 1.21761 0.94160 0.98159 0.86756 1.22644 0.97496 0.99929 0.96796 1.22767 1.00396 0.97382 0.96338 1.22111 0.95976 0.95919 0.87357 0.92187 0.89044 0.89056 0.76428 0.89988 0.90001 0.84286 0.84270 0.90672 0.91531 0.90468 0.89984 0.89799 0.90412 0.91408 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.53 9.88 7.85 -10.99 -0.09 9.79 16 12 O -0.51 -11.73 15.86 5.56 0.09 -11.64 16 13 N -0.73 -9.55 5.56 -60.29 -0.33 -9.88 16 14 C 0.13 1.56 5.68 -4.04 -0.02 1.54 16 15 C -0.65 -4.59 6.29 37.16 0.23 -4.36 16 16 S 2.63 24.25 5.65 -107.50 -0.61 23.64 16 17 O -0.94 -11.67 17.28 -57.54 -0.99 -12.66 16 18 O -0.94 -11.77 17.60 -57.54 -1.01 -12.78 16 19 N -1.01 -6.78 3.62 -111.43 -0.40 -7.18 16 20 C 0.12 0.62 6.89 -3.07 -0.02 0.60 16 21 C -0.13 -0.43 6.95 -24.90 -0.17 -0.60 16 22 C -0.13 -0.47 7.08 -24.58 -0.17 -0.65 16 23 C 0.11 0.57 7.08 -2.53 -0.02 0.55 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 26 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 27 H 0.40 3.76 8.47 -40.82 -0.35 3.41 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.14 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.14 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.51 7.67 -51.93 -0.40 0.11 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -39.31 357.30 -10.01 -49.31 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.78 Total: -2.43 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 0.16 Total: -8.86 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.00 Total: -42.45 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.92 Total: -37.08 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 22.65 SS G_CDS: -2.82 Total: 19.83 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.31 -10.01 -49.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888869550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.109 kcal (2) G-P(sol) polarization free energy of solvation -39.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds