Wall clock time and date at job start Fri Apr 10 2020 18:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47248 * 299.99832 * 3 2 1 6 6 H 1.48501 * 109.47068 * 59.99849 * 3 2 1 7 7 C 1.38796 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00151 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 S 1.81396 * 109.47360 * 179.97438 * 15 14 13 17 17 O 1.42094 * 110.54259 * 291.62586 * 16 15 14 18 18 O 1.42106 * 110.54167 * 68.37612 * 16 15 14 19 19 N 1.65606 * 104.45103 * 179.97438 * 16 15 14 20 20 C 1.47016 * 125.64780 * 269.69439 * 19 16 15 21 21 C 1.54311 * 107.27721 * 180.96885 * 20 19 16 22 22 C 1.55156 * 102.86331 * 22.52360 * 21 20 19 23 23 C 1.47419 * 125.64796 * 90.00055 * 19 16 15 24 24 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46925 * 60.00021 * 10 9 7 26 26 H 1.09002 * 109.47115 * 300.00178 * 10 9 7 27 27 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 28 28 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 29 29 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 30 30 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 31 31 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 32 32 H 1.09005 * 109.88595 * 300.51015 * 20 19 16 33 33 H 1.08993 * 109.88616 * 61.67467 * 20 19 16 34 34 H 1.09000 * 110.92734 * 264.11198 * 21 20 19 35 35 H 1.08996 * 110.59610 * 140.78371 * 21 20 19 36 36 H 1.09003 * 111.00798 * 206.23126 * 22 21 20 37 37 H 1.08998 * 111.00714 * 82.37798 * 22 21 20 38 38 H 1.09002 * 110.36704 * 274.67779 * 23 19 16 39 39 H 1.09006 * 110.36471 * 36.88438 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3028 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.3305 -7.7151 0.0034 15 6 3.5025 -8.6985 0.0046 16 16 2.8664 -10.3973 0.0056 17 8 2.2318 -10.6914 1.2425 18 8 2.2329 -10.6933 -1.2315 19 7 4.2234 -11.3467 0.0062 20 6 4.9218 -11.8438 -1.1882 21 6 6.1088 -12.7012 -0.7013 22 6 5.6750 -13.1100 0.7311 23 6 4.9273 -11.8385 1.2044 24 1 -0.4850 0.8400 -0.0004 25 1 3.1238 -3.7310 0.8925 26 1 3.1252 -3.7318 -0.8874 27 1 3.8010 -6.1835 0.0043 28 1 1.7209 -7.8747 0.8928 29 1 1.7228 -7.8757 -0.8871 30 1 4.1118 -8.5388 -0.8850 31 1 4.1105 -8.5381 0.8949 32 1 4.2442 -12.4518 -1.7877 33 1 5.2904 -11.0047 -1.7782 34 1 7.0271 -12.1147 -0.6735 35 1 6.2308 -13.5810 -1.3331 36 1 6.5425 -13.3100 1.3600 37 1 5.0059 -13.9701 0.7063 38 1 5.6368 -11.0917 1.5608 39 1 4.2126 -12.0866 1.9892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888869550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:21 Heat of formation + Delta-G solvation = -139.493030 kcal Electronic energy + Delta-G solvation = -22102.664431 eV Core-core repulsion = 18490.344510 eV Total energy + Delta-G solvation = -3612.319921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.085 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71359 -39.21638 -38.34780 -37.17543 -36.57432 -34.58958 -32.71169 -31.87931 -30.19899 -29.86253 -27.67995 -24.78627 -23.38747 -22.05863 -22.03997 -20.06040 -19.80713 -18.90789 -18.12725 -17.53095 -17.35152 -17.24249 -16.88434 -16.78089 -16.43037 -15.80051 -15.53789 -14.91226 -14.79096 -14.62832 -14.46387 -14.18572 -13.73644 -13.60425 -13.46708 -13.36386 -13.27117 -13.16755 -12.94979 -12.87498 -12.70073 -12.61685 -12.18873 -12.11205 -12.01071 -11.71567 -11.50560 -11.16432 -11.05304 -10.31091 -10.27943 -9.97857 -8.68225 -8.35201 -6.13746 -0.99016 1.25243 1.41764 1.45910 1.52006 1.54985 1.58828 2.18365 2.26768 2.75198 2.96392 2.99223 3.22137 3.31398 3.63536 3.63636 3.91053 3.94116 4.14236 4.19047 4.27894 4.39898 4.42105 4.49371 4.61506 4.63021 4.64114 4.92554 5.02376 5.05292 5.09440 5.20216 5.22291 5.37532 5.41958 5.49363 6.19731 6.40402 7.06179 7.14494 8.74283 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.034888 B = 0.002070 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.387003 B =13520.751490 C =13922.143104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.010 3.990 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.128 4.128 11 C 0.531 3.469 12 O -0.565 6.565 13 N -0.704 5.704 14 C 0.120 3.880 15 C -0.625 4.625 16 S 2.642 3.358 17 O -0.984 6.984 18 O -0.984 6.984 19 N -1.013 6.013 20 C 0.104 3.896 21 C -0.123 4.123 22 C -0.129 4.129 23 C 0.101 3.899 24 H 0.271 0.729 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.424 0.576 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.205 -26.495 0.136 33.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.070 5.930 10 C -0.279 4.279 11 C 0.316 3.684 12 O -0.442 6.442 13 N -0.360 5.360 14 C -0.006 4.006 15 C -0.755 4.755 16 S 2.737 3.263 17 O -0.974 6.974 18 O -0.975 6.975 19 N -0.853 5.853 20 C -0.020 4.020 21 C -0.162 4.162 22 C -0.168 4.168 23 C -0.023 4.023 24 H 0.080 0.920 25 H 0.134 0.866 26 H 0.133 0.867 27 H 0.263 0.737 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.190 0.810 31 H 0.191 0.809 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.110 -27.030 0.129 32.536 hybrid contribution 1.907 1.737 -0.027 2.579 sum 20.017 -25.293 0.103 32.256 Atomic orbital electron populations 1.70196 1.08038 1.28560 1.48075 1.26170 0.95991 1.03468 0.93791 0.84870 0.78650 0.76195 0.77995 1.17824 1.20034 1.20040 1.23232 0.95395 0.91776 1.58711 0.89641 1.85678 1.10705 0.99497 1.97078 1.23364 1.03594 0.93626 1.07315 1.20235 0.86232 0.86916 0.74973 1.90718 1.17592 1.86108 1.49831 1.45568 1.10694 1.03777 1.76007 1.20975 0.94963 0.81403 1.03292 1.30809 1.09265 1.19726 1.15718 1.03815 0.72919 0.76790 0.72738 1.93566 1.73476 1.83753 1.46595 1.93569 1.73612 1.83688 1.46596 1.58446 1.47242 1.64971 1.14655 1.22009 0.94539 0.99115 0.86350 1.22663 0.97091 1.00085 0.96356 1.22804 1.00751 0.96264 0.97030 1.22370 0.96098 0.97418 0.86460 0.92019 0.86636 0.86651 0.73748 0.90977 0.91008 0.80953 0.80911 0.92206 0.89707 0.88757 0.89198 0.87785 0.91418 0.88883 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.06 13.22 21.65 0.29 -55.78 16 2 C 0.01 0.59 5.49 84.86 0.47 1.05 16 3 Si 1.00 43.21 29.55 68.60 2.03 45.24 16 4 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.64 9.50 67.95 0.65 -30.00 16 8 H 0.09 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.16 -8.66 20.57 -56.49 -1.16 -9.82 16 10 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 11 C 0.53 19.19 7.85 87.66 0.69 19.88 16 12 O -0.56 -26.40 15.86 -3.03 -0.05 -26.45 16 13 N -0.70 -16.43 5.56 -463.06 -2.57 -19.00 16 14 C 0.12 2.61 5.68 86.38 0.49 3.10 16 15 C -0.63 -6.88 6.29 71.98 0.45 -6.43 16 16 S 2.64 46.90 5.65 -56.49 -0.32 46.58 16 17 O -0.98 -24.74 17.28 -127.65 -2.21 -26.95 16 18 O -0.98 -24.96 17.60 -127.65 -2.25 -27.21 16 19 N -1.01 -11.92 3.62 -506.47 -1.83 -13.75 16 20 C 0.10 0.91 6.89 86.73 0.60 1.50 16 21 C -0.12 -0.48 6.95 31.78 0.22 -0.26 16 22 C -0.13 -0.66 7.08 31.99 0.23 -0.44 16 23 C 0.10 0.84 7.08 86.86 0.61 1.45 16 24 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 25 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 26 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 27 H 0.42 6.03 8.47 -92.71 -0.79 5.25 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.17 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.17 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.07 0.80 7.67 -2.38 -0.02 0.78 16 Total: -1.00 -89.83 357.30 -2.96 -92.79 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.27 Total: 8.91 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 4.84 Total: -14.57 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -4.12 Total: -88.53 kcal Atomic # 8 Polarization: -76.11 SS G_CDS: -4.50 Total: -80.61 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 38.24 SS G_CDS: -1.48 Total: 36.76 kcal Total: -89.83 -2.96 -92.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888869550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.703 kcal (2) G-P(sol) polarization free energy of solvation -89.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds