Wall clock time and date at job start Fri Apr 10 2020 18:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36277 * 120.27735 * 2 1 4 4 C 1.40192 * 119.56470 * 179.75181 * 3 2 1 5 5 C 1.35196 * 120.15504 * 0.48367 * 4 3 2 6 6 N 1.36185 * 120.73973 * 359.48582 * 5 4 3 7 7 C 1.35014 * 119.65375 * 180.25773 * 6 5 4 8 8 O 1.22088 * 120.52276 * 359.97438 * 7 6 5 9 9 C 1.39971 * 118.96118 * 180.02562 * 7 6 5 10 10 C 1.38132 * 118.91962 * 0.02562 * 9 7 6 11 11 C 1.50699 * 119.96826 * 179.97438 * 10 9 7 12 12 S 1.81410 * 109.47012 * 105.00257 * 11 10 9 13 13 O 1.42098 * 108.57681 * 294.48677 * 12 11 10 14 14 O 1.42098 * 108.57507 * 65.50945 * 12 11 10 15 15 C 1.81393 * 101.92116 * 179.97438 * 12 11 10 16 16 C 1.50699 * 109.47151 * 179.97438 * 15 12 11 17 17 H 1.07994 * 120.00176 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99787 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00499 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99815 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47101 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47124 * 120.00317 * 20 18 16 23 23 H 1.48504 * 109.47630 * 240.00578 * 20 18 16 24 24 N 1.32382 * 120.05916 * 0.02562 * 10 9 7 25 25 C 1.33183 * 121.34921 * 359.97438 * 24 10 9 26 26 H 1.09003 * 109.46727 * 270.02406 * 1 2 3 27 27 H 1.08995 * 109.47005 * 30.02021 * 1 2 3 28 28 H 1.08998 * 109.46989 * 150.02609 * 1 2 3 29 29 H 1.08001 * 120.21498 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.92567 * 180.24838 * 4 3 2 31 31 H 1.08002 * 119.63442 * 179.77531 * 5 4 3 32 32 H 1.07994 * 120.54392 * 180.02562 * 9 7 6 33 33 H 1.08997 * 109.47014 * 224.99570 * 11 10 9 34 34 H 1.09000 * 109.47525 * 345.00526 * 11 10 9 35 35 H 1.09005 * 109.47299 * 300.00051 * 15 12 11 36 36 H 1.09001 * 109.47262 * 59.99599 * 15 12 11 37 37 H 0.96993 * 120.00249 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1769 0.0000 4 6 3.5959 1.1594 0.0053 5 6 4.2605 -0.0179 0.0005 6 7 3.5833 -1.1995 0.0010 7 6 4.2692 -2.3624 0.0014 8 8 5.4901 -2.3623 0.0008 9 6 3.5586 -3.5683 0.0014 10 6 2.1778 -3.5300 0.0004 11 6 1.3891 -4.8142 -0.0003 12 16 0.6942 -5.0978 1.6513 13 8 1.7638 -5.3145 2.5613 14 8 -0.2535 -4.0751 1.9253 15 6 -0.1948 -6.6620 1.4202 16 6 -0.8497 -7.0638 2.7166 17 1 -0.7423 -6.4404 3.5918 18 6 -1.5870 -8.2269 2.7849 19 7 -1.7183 -8.9859 1.7189 20 14 -2.3982 -8.7254 4.3920 21 1 -2.1002 -7.7092 5.4330 22 1 -3.8675 -8.8177 4.1971 23 1 -1.8722 -10.0455 4.8235 24 7 1.5468 -2.3663 -0.0010 25 6 2.2163 -1.2150 -0.0010 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6621 2.1168 -0.0004 30 1 4.1462 2.0887 0.0094 31 1 5.3405 -0.0215 0.0009 32 1 4.0813 -4.5134 0.0021 33 1 0.5803 -4.7434 -0.7274 34 1 2.0450 -5.6433 -0.2657 35 1 -0.9571 -6.5365 0.6512 36 1 0.5073 -7.4370 1.1126 37 1 -2.2366 -9.8043 1.7671 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905264881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:39 Heat of formation + Delta-G solvation = -31.552538 kcal Electronic energy + Delta-G solvation = -24511.286414 eV Core-core repulsion = 20768.203193 eV Total energy + Delta-G solvation = -3743.083221 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.86609 -38.67004 -37.88233 -36.04023 -35.09126 -34.96126 -33.37010 -33.13309 -30.60124 -29.37741 -28.95535 -27.41136 -25.32459 -23.90821 -23.08207 -22.20114 -19.14192 -18.88966 -18.11638 -17.77880 -16.96126 -16.78068 -15.87114 -15.71937 -15.53561 -15.14428 -15.06932 -14.68390 -14.36613 -14.09753 -14.03023 -13.60005 -12.96124 -12.84926 -12.73859 -12.52719 -12.42793 -12.30596 -12.16123 -11.99933 -11.40403 -11.14724 -11.08995 -10.93102 -10.80186 -10.62635 -10.53244 -10.43955 -10.08835 -9.80238 -9.46113 -9.04778 -8.72908 -7.87033 -6.34873 -4.44391 -0.12312 0.18032 0.86196 1.79844 1.91335 2.40024 3.20668 3.27778 3.35396 3.50101 3.57071 3.73347 3.94757 4.09156 4.21831 4.32346 4.37354 4.47874 4.66348 4.74904 5.00644 5.09219 5.11525 5.17739 5.30726 5.45910 5.49882 5.52407 5.59443 5.64053 5.78969 5.88056 6.11305 6.22123 6.36905 6.60290 6.65680 7.46486 7.52681 7.54617 7.72544 8.57606 9.22888 10.77028 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.023562 B = 0.003368 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.078997 B = 8311.144584 C = 8959.338598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.090 4.090 3 C -0.050 4.050 4 C -0.162 4.162 5 C 0.088 3.912 6 N -0.428 5.428 7 C 0.511 3.489 8 O -0.534 6.534 9 C -0.315 4.315 10 C 0.224 3.776 11 C -0.591 4.591 12 S 2.392 3.608 13 O -0.949 6.949 14 O -0.935 6.935 15 C -0.398 4.398 16 C -0.529 4.529 17 H 0.073 0.927 18 C 0.075 3.925 19 N -0.881 5.881 20 Si 0.906 3.094 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.278 1.278 24 N -0.524 5.524 25 C 0.393 3.607 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.181 0.819 32 H 0.164 0.836 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.514 19.516 -7.891 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.093 4.093 3 C -0.074 4.074 4 C -0.183 4.183 5 C -0.035 4.035 6 N -0.131 5.131 7 C 0.318 3.682 8 O -0.414 6.414 9 C -0.342 4.342 10 C 0.095 3.905 11 C -0.712 4.712 12 S 2.575 3.425 13 O -0.947 6.947 14 O -0.932 6.932 15 C -0.533 4.533 16 C -0.568 4.568 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.517 5.517 20 Si 0.732 3.268 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.203 1.203 24 N -0.248 5.248 25 C 0.149 3.851 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.170 0.830 30 H 0.176 0.824 31 H 0.198 0.802 32 H 0.182 0.818 33 H 0.172 0.828 34 H 0.166 0.834 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.543 19.637 -7.272 21.939 hybrid contribution 0.520 -0.949 -0.131 1.090 sum 7.062 18.689 -7.403 21.306 Atomic orbital electron populations 1.20707 0.87278 1.03998 1.04045 1.19762 0.98413 0.88423 1.02678 1.21432 0.93843 0.98526 0.93617 1.20989 0.94741 0.97666 1.04863 1.22299 1.00513 0.83923 0.96763 1.44398 1.08367 1.09800 1.50506 1.17116 0.88452 0.82819 0.79854 1.90973 1.11808 1.85698 1.52913 1.22704 0.93845 0.98714 1.18924 1.20395 0.91012 0.91629 0.87436 1.29769 1.11625 0.99542 1.30257 1.09277 0.76713 0.80556 0.75944 1.93498 1.56518 1.86961 1.57684 1.93498 1.60811 1.57425 1.81442 1.27521 1.07996 1.10888 1.06921 1.20392 1.33859 1.09076 0.93478 0.90870 1.24931 0.95278 0.95416 0.97470 1.69949 1.39328 1.13725 1.28741 0.86283 0.79057 0.78882 0.82540 1.18937 1.20313 1.20330 1.68763 1.34412 0.95486 1.26130 1.20375 0.78334 0.95384 0.91043 0.89746 0.90929 0.89149 0.83000 0.82414 0.80234 0.81814 0.82797 0.83387 0.89351 0.89500 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 9.77 36.01 0.35 -0.59 16 2 C -0.09 -0.91 5.90 -104.40 -0.62 -1.53 16 3 C -0.05 -0.33 9.72 -39.55 -0.38 -0.71 16 4 C -0.16 -1.01 9.99 -39.93 -0.40 -1.40 16 5 C 0.09 0.84 10.08 -16.70 -0.17 0.67 16 6 N -0.43 -5.84 2.76 -65.37 -0.18 -6.02 16 7 C 0.51 8.42 7.36 -15.50 -0.11 8.30 16 8 O -0.53 -9.64 16.69 4.84 0.08 -9.56 16 9 C -0.32 -5.25 9.69 -38.97 -0.38 -5.62 16 10 C 0.22 3.78 6.06 -82.39 -0.50 3.28 16 11 C -0.59 -9.23 6.18 36.01 0.22 -9.01 16 12 S 2.39 49.99 4.62 -107.50 -0.50 49.50 16 13 O -0.95 -22.62 18.10 -57.83 -1.05 -23.67 16 14 O -0.93 -21.66 18.10 -57.83 -1.05 -22.71 16 15 C -0.40 -9.25 5.56 36.01 0.20 -9.05 16 16 C -0.53 -14.48 9.13 -34.44 -0.31 -14.80 16 17 H 0.07 2.00 7.71 -52.49 -0.40 1.60 16 18 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 19 N -0.88 -24.49 13.29 55.43 0.74 -23.75 16 20 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 N -0.52 -8.58 9.23 -8.56 -0.08 -8.66 16 25 C 0.39 5.47 7.32 -155.94 -1.14 4.33 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.09 0.99 7.49 -51.93 -0.39 0.60 16 29 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 30 H 0.16 0.40 8.06 -52.49 -0.42 -0.02 16 31 H 0.18 1.50 7.34 -52.49 -0.39 1.12 16 32 H 0.16 2.49 8.02 -52.49 -0.42 2.07 16 33 H 0.15 2.01 8.14 -51.93 -0.42 1.59 16 34 H 0.15 1.86 7.96 -51.92 -0.41 1.44 16 35 H 0.09 1.97 8.14 -51.92 -0.42 1.55 16 36 H 0.09 1.95 8.14 -51.92 -0.42 1.52 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 339.46 15.07 5.12 5.12 Total: -1.00 -37.52 339.46 -9.38 -46.90 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.10 Total: 1.17 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -3.34 Total: -24.19 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.48 Total: -38.43 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -2.01 Total: -55.94 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 49.99 SS G_CDS: -0.50 Total: 49.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.52 -9.38 -46.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905264881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.344 kcal (2) G-P(sol) polarization free energy of solvation -37.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds