Wall clock time and date at job start Fri Apr 10 2020 18:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36277 * 120.27735 * 2 1 4 4 C 1.40192 * 119.56470 * 179.75181 * 3 2 1 5 5 C 1.35196 * 120.15504 * 0.48367 * 4 3 2 6 6 N 1.36185 * 120.73973 * 359.48582 * 5 4 3 7 7 C 1.35014 * 119.65375 * 180.25773 * 6 5 4 8 8 O 1.22088 * 120.52276 * 359.97438 * 7 6 5 9 9 C 1.39971 * 118.96118 * 180.02562 * 7 6 5 10 10 C 1.38132 * 118.91962 * 0.02562 * 9 7 6 11 11 C 1.50699 * 119.96826 * 179.97438 * 10 9 7 12 12 S 1.81410 * 109.47012 * 105.00257 * 11 10 9 13 13 O 1.42098 * 108.57681 * 294.48677 * 12 11 10 14 14 O 1.42098 * 108.57507 * 65.50945 * 12 11 10 15 15 C 1.81393 * 101.92116 * 179.97438 * 12 11 10 16 16 C 1.50699 * 109.47151 * 179.97438 * 15 12 11 17 17 H 1.07994 * 120.00176 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99787 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00499 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99815 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47101 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47124 * 120.00317 * 20 18 16 23 23 H 1.48504 * 109.47630 * 240.00578 * 20 18 16 24 24 N 1.32382 * 120.05916 * 0.02562 * 10 9 7 25 25 C 1.33183 * 121.34921 * 359.97438 * 24 10 9 26 26 H 1.09003 * 109.46727 * 270.02406 * 1 2 3 27 27 H 1.08995 * 109.47005 * 30.02021 * 1 2 3 28 28 H 1.08998 * 109.46989 * 150.02609 * 1 2 3 29 29 H 1.08001 * 120.21498 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.92567 * 180.24838 * 4 3 2 31 31 H 1.08002 * 119.63442 * 179.77531 * 5 4 3 32 32 H 1.07994 * 120.54392 * 180.02562 * 9 7 6 33 33 H 1.08997 * 109.47014 * 224.99570 * 11 10 9 34 34 H 1.09000 * 109.47525 * 345.00526 * 11 10 9 35 35 H 1.09005 * 109.47299 * 300.00051 * 15 12 11 36 36 H 1.09001 * 109.47262 * 59.99599 * 15 12 11 37 37 H 0.96993 * 120.00249 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1769 0.0000 4 6 3.5959 1.1594 0.0053 5 6 4.2605 -0.0179 0.0005 6 7 3.5833 -1.1995 0.0010 7 6 4.2692 -2.3624 0.0014 8 8 5.4901 -2.3623 0.0008 9 6 3.5586 -3.5683 0.0014 10 6 2.1778 -3.5300 0.0004 11 6 1.3891 -4.8142 -0.0003 12 16 0.6942 -5.0978 1.6513 13 8 1.7638 -5.3145 2.5613 14 8 -0.2535 -4.0751 1.9253 15 6 -0.1948 -6.6620 1.4202 16 6 -0.8497 -7.0638 2.7166 17 1 -0.7423 -6.4404 3.5918 18 6 -1.5870 -8.2269 2.7849 19 7 -1.7183 -8.9859 1.7189 20 14 -2.3982 -8.7254 4.3920 21 1 -2.1002 -7.7092 5.4330 22 1 -3.8675 -8.8177 4.1971 23 1 -1.8722 -10.0455 4.8235 24 7 1.5468 -2.3663 -0.0010 25 6 2.2163 -1.2150 -0.0010 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6621 2.1168 -0.0004 30 1 4.1462 2.0887 0.0094 31 1 5.3405 -0.0215 0.0009 32 1 4.0813 -4.5134 0.0021 33 1 0.5803 -4.7434 -0.7274 34 1 2.0450 -5.6433 -0.2657 35 1 -0.9571 -6.5365 0.6512 36 1 0.5073 -7.4370 1.1126 37 1 -2.2366 -9.8043 1.7671 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905264881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:36 Heat of formation + Delta-G solvation = -59.065951 kcal Electronic energy + Delta-G solvation = -24512.479485 eV Core-core repulsion = 20768.203193 eV Total energy + Delta-G solvation = -3744.276293 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -43.86842 -39.69102 -38.96191 -37.83006 -36.87031 -35.87482 -35.39399 -34.09223 -31.59834 -31.10255 -30.33867 -28.22132 -26.25020 -25.68016 -24.32662 -23.13070 -20.20252 -19.97788 -19.67896 -19.01470 -18.58725 -17.99085 -17.48364 -17.04553 -16.93721 -16.55775 -16.19766 -16.00866 -15.63416 -15.20176 -15.01780 -14.75719 -14.45258 -14.11113 -14.00674 -13.73883 -13.60074 -13.51415 -13.37799 -12.99235 -12.96568 -12.90365 -12.73062 -12.70901 -12.54461 -12.03509 -11.75705 -11.65486 -11.41643 -11.25467 -10.98897 -10.76605 -10.39312 -8.87635 -8.40479 -6.56532 -1.19123 -0.85476 -0.50020 0.71147 0.94540 1.38367 1.39150 1.53407 1.58227 2.06040 2.30628 2.44729 2.55242 2.83697 2.93328 3.07622 3.22140 3.27329 3.51302 3.73449 3.84594 3.91231 4.15682 4.26655 4.39083 4.44120 4.52291 4.76112 4.76658 4.77787 4.86102 4.87964 4.92642 5.14809 5.26174 5.32774 5.37418 5.56949 5.74616 6.37422 6.45967 6.52350 7.13903 8.72217 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.023562 B = 0.003368 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.078997 B = 8311.144584 C = 8959.338598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.115 4.115 3 C -0.011 4.011 4 C -0.124 4.124 5 C 0.055 3.945 6 N -0.427 5.427 7 C 0.503 3.497 8 O -0.565 6.565 9 C -0.350 4.350 10 C 0.216 3.784 11 C -0.564 4.564 12 S 2.411 3.589 13 O -0.987 6.987 14 O -0.965 6.965 15 C -0.414 4.414 16 C -0.563 4.563 17 H 0.059 0.941 18 C 0.027 3.973 19 N -0.907 5.907 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.264 1.264 23 H -0.267 1.267 24 N -0.556 5.556 25 C 0.372 3.628 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.063 0.937 29 H 0.206 0.794 30 H 0.212 0.788 31 H 0.188 0.812 32 H 0.166 0.834 33 H 0.183 0.817 34 H 0.181 0.819 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.428 23.121 -8.646 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.118 4.118 3 C -0.034 4.034 4 C -0.143 4.143 5 C -0.067 4.067 6 N -0.128 5.128 7 C 0.310 3.690 8 O -0.448 6.448 9 C -0.378 4.378 10 C 0.084 3.916 11 C -0.691 4.691 12 S 2.599 3.401 13 O -0.985 6.985 14 O -0.962 6.962 15 C -0.548 4.548 16 C -0.601 4.601 17 H 0.078 0.922 18 C -0.176 4.176 19 N -0.544 5.544 20 Si 0.784 3.216 21 H -0.192 1.192 22 H -0.189 1.189 23 H -0.191 1.191 24 N -0.281 5.281 25 C 0.132 3.868 26 H 0.092 0.908 27 H 0.131 0.869 28 H 0.082 0.918 29 H 0.223 0.777 30 H 0.229 0.771 31 H 0.205 0.795 32 H 0.183 0.817 33 H 0.201 0.799 34 H 0.198 0.802 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.410 23.270 -7.974 25.420 hybrid contribution 0.603 -1.692 -0.011 1.796 sum 7.013 21.578 -7.984 24.053 Atomic orbital electron populations 1.20722 0.86767 1.04729 1.03635 1.20108 0.98996 0.88184 1.04539 1.22145 0.94031 0.99056 0.88169 1.21724 0.94842 0.98058 0.99684 1.22896 1.01402 0.83685 0.98690 1.44310 1.08454 1.10395 1.49614 1.17100 0.88164 0.83794 0.79909 1.90928 1.12670 1.86400 1.54819 1.22754 0.94082 0.99365 1.21569 1.20456 0.91071 0.92135 0.87943 1.29451 1.12980 1.00977 1.25713 1.08211 0.75658 0.78767 0.77469 1.93444 1.56990 1.87052 1.60972 1.93449 1.62103 1.57349 1.83340 1.27568 1.08611 1.13241 1.05385 1.20761 1.34918 1.09624 0.94827 0.92236 1.25766 0.95735 0.95372 1.00760 1.70003 1.39924 1.14169 1.30304 0.85444 0.78765 0.78719 0.78638 1.19174 1.18891 1.19145 1.68734 1.35267 0.96060 1.28073 1.20991 0.78558 0.96128 0.91127 0.90752 0.86909 0.91769 0.77697 0.77128 0.79519 0.81669 0.79939 0.80157 0.88836 0.89148 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 9.77 71.24 0.70 -0.94 16 2 C -0.12 -2.02 5.90 -19.72 -0.12 -2.13 16 3 C -0.01 -0.08 9.72 22.29 0.22 0.14 16 4 C -0.12 -0.82 9.99 22.04 0.22 -0.60 16 5 C 0.06 0.92 10.08 83.32 0.84 1.76 16 6 N -0.43 -11.45 2.76 -478.64 -1.32 -12.77 16 7 C 0.50 17.11 7.36 84.62 0.62 17.74 16 8 O -0.57 -21.16 16.69 -5.60 -0.09 -21.25 16 9 C -0.35 -12.19 9.69 22.66 0.22 -11.97 16 10 C 0.22 7.47 6.06 42.45 0.26 7.73 16 11 C -0.56 -17.73 6.18 71.24 0.44 -17.29 16 12 S 2.41 104.50 4.62 -56.49 -0.26 104.24 16 13 O -0.99 -49.24 18.10 -127.37 -2.31 -51.55 16 14 O -0.97 -46.51 18.10 -127.37 -2.30 -48.82 16 15 C -0.41 -19.94 5.56 71.24 0.40 -19.55 16 16 C -0.56 -31.90 9.13 25.60 0.23 -31.66 16 17 H 0.06 3.42 7.71 -2.91 -0.02 3.40 16 18 C 0.03 1.48 5.46 84.65 0.46 1.95 16 19 N -0.91 -51.08 13.29 21.45 0.28 -50.80 16 20 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 N -0.56 -18.52 9.23 -180.99 -1.67 -20.19 16 25 C 0.37 10.15 7.32 133.98 0.98 11.13 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.11 0.83 8.09 -2.39 -0.02 0.81 16 28 H 0.06 1.39 7.49 -2.39 -0.02 1.37 16 29 H 0.21 -0.54 8.06 -2.91 -0.02 -0.57 16 30 H 0.21 -0.67 8.06 -2.91 -0.02 -0.69 16 31 H 0.19 2.78 7.34 -2.91 -0.02 2.76 16 32 H 0.17 5.35 8.02 -2.91 -0.02 5.33 16 33 H 0.18 4.65 8.14 -2.39 -0.02 4.63 16 34 H 0.18 4.44 7.96 -2.39 -0.02 4.42 16 35 H 0.09 4.31 8.14 -2.39 -0.02 4.29 16 36 H 0.09 4.20 8.14 -2.39 -0.02 4.18 16 37 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -88.25 339.46 0.93 -87.33 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.10 Total: 12.27 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 5.47 Total: -43.71 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -2.71 Total: -83.76 kcal Atomic # 8 Polarization: -116.91 SS G_CDS: -4.70 Total: -121.61 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 104.50 SS G_CDS: -0.26 Total: 104.24 kcal Total: -88.25 0.93 -87.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905264881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.263 kcal (2) G-P(sol) polarization free energy of solvation -88.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds