Wall clock time and date at job start Fri Apr 10 2020 18:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46495 * 109.47187 * 2 1 4 4 C 1.34776 * 120.00277 * 84.30085 * 3 2 1 5 5 O 1.21270 * 120.00177 * 5.36074 * 4 3 2 6 6 C 1.50711 * 119.99616 * 185.36293 * 4 3 2 7 7 H 1.08994 * 110.31013 * 36.06501 * 6 4 3 8 8 C 1.54989 * 110.43355 * 158.31475 * 6 4 3 9 9 C 1.53255 * 104.19076 * 116.41329 * 8 6 4 10 10 H 1.08996 * 110.29381 * 269.71267 * 9 8 6 11 11 C 1.52251 * 113.90802 * 144.42315 * 9 8 6 12 12 C 1.53665 * 107.57478 * 182.75741 * 11 9 8 13 13 C 1.52816 * 110.61407 * 56.12500 * 12 11 9 14 14 C 1.53628 * 110.69797 * 306.25360 * 13 12 11 15 15 N 1.45658 * 107.80549 * 57.37521 * 14 13 12 16 16 C 1.47098 * 116.53853 * 177.32215 * 15 14 13 17 17 C 1.46505 * 119.99727 * 264.30530 * 3 2 1 18 18 C 1.53936 * 113.74482 * 38.73316 * 17 3 2 19 19 N 1.47809 * 86.04136 * 222.08623 * 18 17 3 20 20 C 1.36939 * 134.45647 * 204.64324 * 19 18 17 21 21 H 1.07998 * 119.99491 * 179.86727 * 20 19 18 22 22 C 1.38805 * 120.00216 * 359.87082 * 20 19 18 23 23 N 1.31620 * 120.00100 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00127 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47253 * 59.99487 * 24 22 20 26 26 H 1.48494 * 109.47517 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47216 * 299.99993 * 24 22 20 28 28 C 1.47582 * 91.04820 * 24.55278 * 19 18 17 29 29 H 1.09004 * 109.46764 * 176.50999 * 1 2 3 30 30 H 1.08993 * 109.47691 * 296.50634 * 1 2 3 31 31 H 1.09002 * 109.46988 * 56.51222 * 1 2 3 32 32 H 1.09007 * 109.47806 * 239.99561 * 2 1 3 33 33 H 1.09001 * 109.47194 * 119.99606 * 2 1 3 34 34 H 1.09005 * 110.48906 * 235.09422 * 8 6 4 35 35 H 1.09005 * 110.49029 * 357.73385 * 8 6 4 36 36 H 1.09005 * 109.83354 * 302.26707 * 11 9 8 37 37 H 1.09000 * 109.83824 * 63.16634 * 11 9 8 38 38 H 1.08999 * 109.24447 * 176.41827 * 12 11 9 39 39 H 1.09001 * 109.24330 * 295.87266 * 12 11 9 40 40 H 1.09000 * 109.23192 * 66.56174 * 13 12 11 41 41 H 1.08994 * 109.22948 * 185.97629 * 13 12 11 42 42 H 1.08997 * 109.79393 * 297.79451 * 14 13 12 43 43 H 1.09003 * 109.78994 * 176.95023 * 14 13 12 44 44 H 1.08999 * 110.60924 * 43.91822 * 16 15 14 45 45 H 1.09001 * 110.74592 * 280.99547 * 16 15 14 46 46 H 1.09001 * 112.94521 * 170.33526 * 17 3 2 47 47 H 1.09004 * 113.77016 * 336.35761 * 18 17 3 48 48 H 1.09009 * 113.76984 * 107.74951 * 18 17 3 49 49 H 0.97001 * 119.99840 * 180.02562 * 23 22 20 50 50 H 1.09007 * 113.76787 * 221.15408 * 28 19 18 51 51 H 1.08995 * 113.77226 * 89.75580 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1336 2.0552 1.1614 5 8 1.9268 1.4895 2.2139 6 6 2.5197 3.5120 1.1520 7 1 2.0762 4.0153 0.2929 8 6 2.0740 4.1984 2.4682 9 6 3.3871 4.6312 3.1294 10 1 3.7597 3.8419 3.7822 11 6 3.2940 5.9531 3.8790 12 6 4.6948 6.2793 4.4201 13 6 5.7172 6.3069 3.2846 14 6 5.6698 4.9994 2.4794 15 7 4.3112 4.8319 1.9815 16 6 4.0643 3.6607 1.1265 17 6 2.3811 2.0298 -1.2625 18 6 1.4416 1.6810 -2.4310 19 7 2.6675 1.5716 -3.2496 20 6 2.9421 1.6895 -4.5859 21 1 3.9535 1.5621 -4.9426 22 6 1.9206 1.9729 -5.4820 23 7 0.6879 2.1277 -5.0473 24 14 2.2953 2.1345 -7.3049 25 1 2.8700 0.8605 -7.8070 26 1 1.0427 2.4368 -8.0429 27 1 3.2712 3.2340 -7.5141 28 6 3.4765 1.2866 -2.0486 29 1 -0.3633 -1.0258 -0.0626 30 1 -0.3634 0.4586 0.9195 31 1 -0.3633 0.5670 -0.8571 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4506 5.0665 2.2537 35 1 1.5406 3.4926 3.1050 36 1 2.9670 6.7409 3.2003 37 1 2.5893 5.8609 4.7055 38 1 4.6735 7.2536 4.9082 39 1 4.9853 5.5199 5.1461 40 1 5.4961 7.1443 2.6227 41 1 6.7154 6.4341 3.7033 42 1 5.9333 4.1599 3.1227 43 1 6.3654 5.0562 1.6421 44 1 4.5420 2.7740 1.5431 45 1 4.4155 3.8432 0.1109 46 1 2.5677 3.0981 -1.1532 47 1 0.9131 0.7363 -2.3029 48 1 0.7859 2.4999 -2.7271 49 1 -0.0259 2.3254 -5.6736 50 1 4.4427 1.7914 -2.0398 51 1 3.5472 0.2260 -1.8079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950089572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:06 Heat of formation + Delta-G solvation = 24.919517 kcal Electronic energy + Delta-G solvation = -28848.719100 eV Core-core repulsion = 25170.549765 eV Total energy + Delta-G solvation = -3678.169335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.68036 -39.33734 -37.75863 -35.02933 -34.47452 -32.34597 -32.05843 -30.98362 -29.17722 -27.47889 -27.31390 -24.94873 -24.18459 -23.40023 -22.79179 -21.82746 -21.09453 -20.03283 -19.75179 -18.07281 -17.46981 -16.73830 -15.99762 -15.66829 -15.47016 -14.93768 -14.83873 -14.70224 -14.36737 -13.94263 -13.73685 -13.70634 -13.37055 -13.08988 -12.75443 -12.66332 -12.45375 -12.40157 -12.08245 -11.74831 -11.67225 -11.61397 -11.36540 -11.26227 -11.16199 -10.90635 -10.88224 -10.79879 -10.66040 -10.58389 -10.48677 -10.41361 -10.37512 -10.13090 -9.60873 -9.43433 -8.85431 -8.50566 -8.17971 -6.97515 -5.84354 -3.17544 2.81318 3.24588 3.36405 3.41024 3.41692 3.88497 4.39701 4.45069 4.50604 4.70474 4.79500 4.90222 4.90745 5.01262 5.12374 5.21413 5.27707 5.33837 5.36889 5.39943 5.43199 5.48558 5.54230 5.63052 5.64279 5.67126 5.71704 5.74235 5.78477 5.82415 5.89424 5.91830 5.93982 6.00783 6.09767 6.13247 6.17564 6.22638 6.25196 6.37749 6.43400 6.56863 6.80908 6.88631 7.10082 7.11298 7.16336 7.44265 7.80242 7.89229 8.44817 8.96496 9.62860 10.48672 11.32562 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.003411 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.780279 B = 8206.657958 C = 9419.834345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.592 5.592 4 C 0.521 3.479 5 O -0.553 6.553 6 C -0.114 4.114 7 H 0.105 0.895 8 C -0.102 4.102 9 C 0.064 3.936 10 H 0.052 0.948 11 C -0.105 4.105 12 C -0.120 4.120 13 C -0.113 4.113 14 C 0.054 3.946 15 N -0.522 5.522 16 C 0.061 3.939 17 C 0.078 3.922 18 C 0.155 3.845 19 N -0.606 5.606 20 C -0.225 4.225 21 H 0.081 0.919 22 C -0.004 4.004 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.283 1.283 28 C 0.109 3.891 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.038 0.962 48 H 0.077 0.923 49 H 0.255 0.745 50 H 0.047 0.953 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 5.354 17.102 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.323 5.323 4 C 0.309 3.691 5 O -0.432 6.432 6 C -0.135 4.135 7 H 0.124 0.876 8 C -0.141 4.141 9 C -0.044 4.044 10 H 0.070 0.930 11 C -0.142 4.142 12 C -0.158 4.158 13 C -0.151 4.151 14 C -0.075 4.075 15 N -0.246 5.246 16 C -0.067 4.067 17 C -0.026 4.026 18 C 0.029 3.971 19 N -0.333 5.333 20 C -0.353 4.353 21 H 0.099 0.901 22 C -0.201 4.201 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.210 1.210 28 C -0.018 4.018 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.109 0.891 46 H 0.130 0.870 47 H 0.056 0.944 48 H 0.095 0.905 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.054 5.563 16.983 18.572 hybrid contribution 0.421 -0.857 -0.844 1.274 sum 5.474 4.706 16.140 17.681 Atomic orbital electron populations 1.22190 0.95895 1.01993 1.02549 1.21343 0.94493 0.82536 1.02598 1.48175 1.63493 1.13876 1.06781 1.20455 0.76558 0.88722 0.83411 1.90616 1.51682 1.69923 1.30983 1.22323 0.96962 0.93129 1.01121 0.87649 1.22148 0.96784 1.00276 0.94850 1.22432 0.93288 0.96604 0.92113 0.93007 1.21499 0.96623 0.96807 0.99305 1.21582 0.95189 1.01366 0.97643 1.21570 0.98633 0.97811 0.97109 1.22024 0.90179 0.97059 0.98199 1.63930 1.06152 1.39129 1.15421 1.22688 0.93352 0.91774 0.98895 1.24196 0.99423 0.97598 0.81429 1.22745 0.90713 0.99642 0.83958 1.45734 1.04033 1.81972 1.01514 1.18931 0.94072 1.42105 0.80187 0.90140 1.24783 0.95288 1.01916 0.98149 1.69793 0.99293 1.53945 1.33578 0.86186 0.76961 0.77976 0.84536 1.21174 1.21511 1.20974 1.22968 0.94931 0.97032 0.86916 0.92090 0.92758 0.91390 0.90010 0.90851 0.90507 0.89506 0.90685 0.91589 0.91927 0.92563 0.91096 0.91840 0.94950 0.90589 0.93849 0.89088 0.87018 0.94413 0.90510 0.93464 0.93507 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.92 37.15 0.37 -2.10 16 2 C 0.11 1.74 5.16 -4.05 -0.02 1.72 16 3 N -0.59 -9.50 2.70 -167.91 -0.45 -9.96 16 4 C 0.52 8.28 6.70 -10.98 -0.07 8.21 16 5 O -0.55 -10.07 15.20 5.57 0.08 -9.98 16 6 C -0.11 -1.54 2.50 -89.55 -0.22 -1.76 16 7 H 0.11 1.43 6.57 -51.93 -0.34 1.09 16 8 C -0.10 -1.26 6.16 -25.55 -0.16 -1.42 16 9 C 0.06 0.73 2.50 -66.95 -0.17 0.56 16 10 H 0.05 0.65 7.98 -51.93 -0.41 0.24 16 11 C -0.10 -0.98 5.64 -26.77 -0.15 -1.13 16 12 C -0.12 -1.01 5.95 -26.48 -0.16 -1.16 16 13 C -0.11 -0.98 6.06 -26.50 -0.16 -1.14 16 14 C 0.05 0.55 5.87 -4.17 -0.02 0.53 16 15 N -0.52 -6.16 4.84 -224.49 -1.09 -7.24 16 16 C 0.06 0.78 6.06 -2.55 -0.02 0.77 16 17 C 0.08 1.36 4.21 -70.14 -0.30 1.07 16 18 C 0.16 3.40 6.50 -2.85 -0.02 3.39 16 19 N -0.61 -14.67 3.70 -177.88 -0.66 -15.33 16 20 C -0.23 -6.07 10.70 -15.06 -0.16 -6.24 16 21 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 22 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 23 N -0.92 -26.23 11.39 55.49 0.63 -25.60 16 24 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.11 2.09 8.43 -2.96 -0.02 2.07 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.09 6.46 -51.93 -0.34 0.75 16 32 H 0.08 1.30 6.14 -51.92 -0.32 0.98 16 33 H 0.07 1.12 7.53 -51.93 -0.39 0.73 16 34 H 0.08 0.86 8.00 -51.93 -0.42 0.45 16 35 H 0.09 1.18 6.78 -51.93 -0.35 0.83 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.03 0.34 7.99 -51.93 -0.41 -0.08 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.59 7.88 -51.93 -0.41 0.18 16 45 H 0.09 1.16 8.02 -51.93 -0.42 0.74 16 46 H 0.11 1.87 5.58 -51.93 -0.29 1.58 16 47 H 0.04 0.84 5.35 -51.93 -0.28 0.56 16 48 H 0.08 1.89 7.17 -51.92 -0.37 1.51 16 49 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 50 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.04 0.68 6.93 -51.93 -0.36 0.32 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -29.98 382.48 -11.00 -40.98 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.88 Total: 1.74 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.38 Total: 3.13 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -1.57 Total: -58.13 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.98 -11.00 -40.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950089572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.904 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds